ABSTRACT
The small RNA database is a compilation of all the small size RNA sequences
available to date from prokaryotic and eukaryotic organisms. About 500 small
RNA sequences are in our database currently. The sources of individual RNAs and
their GenBank accession numbers are also included. The small RNA database can
be accessed through the World Wide Web (WWW). Our WWW URL is
http://mbcr.bcm.tmc.edu/smallRNA/smallrna.html. The new small RNA sequences
published since our last compilation are listed in this paper.
Table 1
.
We would like to thank Dr Paula E.Burch for helping establish our WWW server.
This work was supported by a grant from the NIH. Email correspondence should be
directed to rreddy{at}bcm.tmc.edu.
Small RNA
Source
Accession no.
Reference
U2 snRNA
Human (
H.sapiens
)
L37793
7
Dog (
C.canis
)
X69482
8
Potato (
S.tuberosum
)
Z37972, Z37973
9
U3 snoRNA
Trypanosome (
T.cruzi
)
S74818, L32920
10
(
L.collosoma
)
S74819, L32919
10
Maize (
Z.mays
)
Z29641
11
Rice (
O.satina)
D17785
H. Uchimiya, unpublished
U6 snRNA
Trypanosome (
L.collosoma
)
X79014
A. Goldring and S. Michaeli, unpublished
(
C.fasciculata
)
X78550, X78551
12
(
L.seymouri
)
X78552
12
Sea urchin (
S.purpuratus
)
X76389
13
Potato (
S.tuberosum
)
Z17282, Z17283, Z17284, Z17286, Z17287, Z17301
14
U14 snoRNA
Maize (
Z.mays
)
Z35298
15
Potato (
S.tuberosum
)
Z35303
15
U15 snoRNA
Frog (
X.laevis
)
X80988
16
U18 snoRNA
Yeast (
S.cerevisiae
)
U12981
17
U20 snoRNA
Human (
H.sapiens
)
Z34290
18
U21 snoRNA
Chicken (
G.gallus
)
Z35310
19
Mouse (
M.musculus
)
Z35311
19
Human (
H.sapiens
)
Z35312
19
U22 snoRNA
Frog (
X.laevis
)
L36586
20
U24 snoRNA
Yeast (
S.cerevisiae
)
Z48760, Z48761
21
Chicken (
G.gallus
)
Z48762, Z48763
21
Human (
H.sapiens
)
Z48764, Z48765
21
E1-2 snoRNA
Human (
H.sapiens
)
U12207
22
E1-5 snoRNA
Human (
H.sapiens
)
U12208
22
E1-6 snoRNA
Human (
H.sapiens
)
U12209
22
E1c snoRNA
Human (
H.sapiens
)
U12211
22
E3-1 snoRNA
Human (
H.sapiens
)
U12212
22
E3 snoRNA
Human (
H.sapiens
)
S67154
23
snR34 snRNA
Yeast (
S.cerevisiae
)
L33802
D. Samarsky
et al.
, unpublished
snR35 snRNA
Yeast (
S.cerevisiae
)
L33803
D. Samarsky
et al.
, unpublished
snR36 snRNA
Yeast (
S.cerevisiae
)
L33804
D. Samarsky
et al.
, unpublished
snR37 snRNA
Yeast (
S.cerevisiae
)
U16693
A .G. Balakin
et al.
, unpublished
snR38 snoRNA
Yeast (
S.pombe
)
U26013
A. Balakin
et al.
, unpublished
snR38 snoRNA
Yeast (
S.cerevisiae)
U26012
A. Balakin
et al.
, unpublished
snR39 snoRNA
Yeast (
S.pombe
)
U26014
A. Balakin
et al.
, unpublished
snR39 snoRNA
Yeast (
S.cerevisiae)
U26011
A. Balakin
et al.
, unpublished
snR40 snoRNA
Yeast (
S.cerevisiae)
U26015
A. Balakin
et al.
, unpublished
snR41 snoRNA
Yeast (
S.cerevisiae)
U26016
A. Balakin
et al.
, unpublished
snRNA D
Diplomonad (
G.lamblia
)
L27108
24
snRNA H
Diplomonad (
G.lamblia
)
L27109
24
snRNA J
Diplomonad (
G.lamblia
)
L27110
24
snRNA
Nematode (
A.lumbricoides
)
L26849, L26850
25
7SL RNA
Crucifer (
A.thaliana
)
X55111
26
small RNA
Virus (herpes simplex virus)
X58774
27
RNase P RNA
Gorilla (
G.gorilla
)
L08685
28
Chimpanzee (
P.troglocytes
)
L08686
28
Rhesus monkey (
M.mulatta
)
L08687
28
Orangutan (
P.pygmaeus
)
L08688
28
Rat (
R.norvegicus
)
L08800
28
Tarsier (
T.syrichta
)
L08801
28
Mouse (
M.musculus
)
L08802
28
Bacteria (
B.thetaiotaomicron
)
L25702
29
(
B.burgdorferi
)
Z30953
30
(
Pseudoanabaena
sp.)
X73135
31
Yeast (
S.cerevisiae
)
Z14231, S46371, S46791
32
(
S.bayanus
)
L12745
33
(
S.carlsbergensis
)
L12746
33
(
S.diastaticus
)
L12747
33
(
S.globosus
)
L12748
33
(
S.uvarum
)
L12749
33
(
S.kluyveri
)
L12750
33
scRNA
Bacteria (
B.brevis
)
D14472
34
Y3 scRNA
Iguana (
I.iguana
)
L27530, L27532
35
Y4 scRNA
Iguana (
I.iguana
)
L27534, L27536, L27537
35
Y4 scRNA
Human (
H.sapiens
)
L32608
36
CeY 1 scRNA
Nematode (
C.elegans
)
L41730
37
scRNA
Eubacteria (
L.monocytogenes
)
U15684
J. F. Peden
et al.
, unpublished
REFERENCES
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