ABSTRACT
The
mdr2
gene encodes a P-glycoprotein that transports phospholipids across the canalicular membrane in hepatocytes. In this
report we describe the isolation, sequencing and first functional
characterization of the promoter of
mdr2
. Analysis of 1.6 kb of DNA upstream of the initiation of translation revealed
that this sequence has a high GC content, lacks a TATA element and contains a
number of putative transcription factor binding sites. We observed that
transcription initiates at several sites between -290 and -463 and that this region was critical for promoter activity. Gel
mobility shift assays indicated that Sp1 protein binds to a Sp1 consensus site
located at -263. Co-expression of Sp1 protein with a reporter construct containing the -263 GC box demonstrated that Sp1 regulates transcription of
this promoter. Expression of a non-functional Sp1 protein did not increase transcription from the
mdr2
promoter. Mutation of the -263 GC box diminished the response of the promoter to Sp1 protein.
Mutation of this site also decreased expression of this promoter in cells which
normally express this gene. These data show that Sp1 has a role in the
regulation of
mdr2
expression.
Members of the multidrug resistance gene family can be functionally divided into
class I and class II genes. Class I comprises the human MDR1 and the rodent
mdr1a
and
mdr1b
genes, while class II comprises the human MDR2 and rodent
mdr2
(
1
,
2
). Recent work has provided strong evidence that the
mdr2
P-glycoprotein is a phosphatidylcholine transporter (
3
,
4
). Mice with a homozygous disruption of the
mdr2
gene are entirely deficient in the transport of phosphatidylcholine into the
bile. As a result these animals develop pronounced hepatic disease consisting
of non-suppurative inflammatory cholangitis (
3
,
5
). These mice also develop liver tumors at 4-6 months of age. Phosphatidylcholine labeled with the fluorescent group 7-nitro-2,1,3-benzoxadiazol-4-yl is transported across the lipid membrane
bilayer of vesicles isolated from yeast overexpressing the murine
mdr2
gene (
4
). As with the
mdr1
P-glycoproteins, transport mediated by the
mdr2
P-glycoprotein is ATP and Mg
2+
dependent and verapamil inhibitable. These data suggest that alterations in the
expression of MDR2, the human homolog of mouse
mdr2
, could contribute to the development of human diseases with pathologies similar to those observed in the knockout mice (
6
).
Although the class I and class II
mdr
genes have a high degree of sequence identity, the functions of the
corresponding P-glycoproteins are significantly different, since class II genes do not
contribute to drug resistance. Considerable effort has focused on understanding
class I genes, since they play a role in clinical manifestations of drug
resistance. The P-glycoprotein products of class I genes are ATP-dependent transmembrane pumps which decrease the concentration of
drugs in cells. When transfected into drug-sensitive cells the class I genes confer resistance to a wide variety of drugs (
7
,
8
). The ability of the class I P-glycoproteins to transport drugs across the cell membrane has led to the
proposal that these proteins normally act to help protect organisms from
exposure to harmful environmental compounds. Mice with a homozygous knockout of
the
mdr1a
gene appear normal until challenged with drugs (
9
). These mice then show an increased accumulation of drugs in the brain,
suggesting that
mdr1a
plays a role in maintaining the blood-brain barrier.
mdr2
mRNA is expressed predominantly in the liver and spleen, to a lower level in
the skeletal muscle, heart, lung and brain and is undetectable in the kidney
and small intestine (
10
-
12
). In addition, unlike
mdr1b
,
mdr2
is not regulated in cells in response to treatment with xenobiotics.
Mdr2
expression remains steady after treatment of cells with 2- acetylaminofluorene, aflatoxin B
1
, cycloheximide and other chemicals which cause increased expression of
mdr1b
(
13
,
14
; P.C.B., unpublished observations). Moderate increases in
mdr2
expression are seen after treatments which induce a proliferative response in
the liver, such as in rats treated with carbon tetrachloride or subjected to
partial hepatectomy (
10
,
15
). These data suggest that
mdr2
expression is not increased directly by xenobiotics but does respond to some
growth- and cell type-specific stimuli.
We have characterized the rat
mdr2
cDNA and shown with primer extension analysis that transcription of this gene
is initiated at more than one start site (
10
). However, little else is known about the regulation of this gene. We present
here the first functional characterization of the
mdr2
promoter and identify one transcription factor which can regulate
mdr2
expression. To better understand the regulation of
mdr2
expression we cloned and sequenced 1.6 kb of the 5' flanking region of the rat
mdr2
gene. Promoter activity of this DNA has been examined through the use of a
series of deletion mutations. Putative transcription factor binding sites were
identified and electrophoretic mobility shift assays were carried out to
investigate interaction of the Sp1 transcription factor with this promoter. In addition, we have shown with co-transfection experiments that Sp1 can regulate transcription from this promoter.
A genomic library constructed from
Bam
HI-digested Fischer rat liver DNA cloned into the [lambda]DASH vector (Stratagene, La Jolla, CA) was screened with a 59 bp 5' fragment of the rat
mdr2
cDNA labeled with [[gamma]-
32
P]dCTP (
10
). Bacteriophage were grown and transferred to Magnagraph nylon membranes (MSI,
Westboro, MA) as previously described (
16
). Following UV crosslinking, the filters were prehybridized in 6* SSC 5* Denhardt's solution, 1% SDS, 40% formamide at 42oC for a minimum of 2 h. Filters were hybridized with 10
6
c.p.m./ml probe for 24-48 h. The filters were washed to a final stringency of 0.1* SSC, 0.1% SDS at 50oC for 1 h then exposed to XAR film (Kodak, Rochester, NY) at -70oC with intensifying screens. Positively
hybridizing phage were rescreened until pure. Clones were further characterized
by Southern blot analysis. A 3.5 kb
Eco
RI fragment and a 1.2 kb
Pvu
II fragment were subcloned into pGem7zf(+) (Promega, Madison, WI) and sequenced
by dideoxy sequencing using Sequenase 2.0 (US Biochemical, Cleveland, OH) and [[alpha]-
35
S]dATP. Nucleotide sequences were analyzed with the PC/Gene software package (Intelligenetics, Mountain View, CA).
Deletion fragments of the 1572 bases of the
mdr2
5' non-coding sequence were obtained from the
Eco
RI or
Pvu
II fragments by PCR or restriction enzyme digestion and were subcloned into the luciferase gene-containing vectors pXP1 and pXP2 (
17
) in forward and reverse orientations respectively. Dideoxy sequencing confirmed that the sequences of all PCR-generated fragments were correct.
To obtain the -335 construct with a mutated Sp1 site three PCR were executed. First, a
fragment from -385 to -254 was amplified using as primer for the 3'-end 5'-CGG CTC GTC C
COS cells or H4-II-E cells were transiently transfected with 10 [mu]g luciferase constructs plus 2 [mu]g CMV [beta]-gal by calcium phosphate precipitation (
18
). Cells were harvested 48 h after transfection and lysed by freeze-thawing
three times in 0.1 M sodium phosphate, pH 7.4, 1 mM dithiothreitol. Luciferase
activity was measured in a Berthold Lumat LB9501 luminometer. One hundred
microliters of 1 mM luciferin and 350 [mu]l 25 mM glycylglycine, pH 7.8, 5 mM ATP, 15 mM MgSO
4
were mixed with an aliquot of sample and luminescence was measured for 30 s. [beta]-Galactosidase activity was measured in an aliquot of extract after
reacting for 15 min with 3 mM
o
-nitrophenyl-[beta]-D-galactopyranoside in 0.1 M sodium phosphate, pH 7.4, 1 mM
MgCl
2
, 45 mM [beta]-mercaptoethanol. Absorbance at 420 nm was measured in a Beckman DU65
spectrophotometer. Luciferase activity was corrected for transfection efficiency by dividing by the corresponding [beta]-galactosidase activity.
Primer extension analysis was used to map the distance of the transcription
start point (
tsp
) from the start of translation (
19
). A primer corresponding to the non-coding strand at positions +10 to +27 was end-labeled with [[gamma]-
32
P]ATP and T4 polynucleotide kinase. This primer was annealed to 50 [mu]g rat liver total RNA at 45oC for 1 h after heating briefly to 70oC in buffer containing 550 mM Tris-HCl, pH 8.3, 450 mM KCl. Avian myeloblastosis virus reverse
transcriptase was used to extend the hybrid in a buffer containing 0.1 mM dithiothreitol, 25 [mu]M deoxynucleotides, 1 mM MgCl
2
. The extension products were electrophoresed through 8% denaturing
polyacrylamide gels and then visualized by autoradiography. A sequence ladder
was run on these gels to permit sizing of the extension products.
Nuclear extracts were prepared according to the method of Rathmell and Chu (
20
). Briefly, 1 * 10
7
cells were washed with phosphate-buffered saline (PBS) and resuspended in 20 [mu]l buffer A (10 mM HEPES, pH 7.9, 1.5 mM MgCl
2
, 10 mM KCl, 0.5 mM dithiothreitol) with 0.1% NP-40. The cells were incubated on ice for 10 min and the nuclei were then
pelleted by centrifugation for 10 min at 12 000
g
at 4oC. The pellet was resuspended in 15 [mu]l buffer C [20 mM HEPES, pH 7.9, 25% glycerol, 420 mM NaCl, 1.5 mM MgCl
2
, 0.2 mM EDTA, 0.2 mM Pefabloc (Boehringer Mannheim Corp., Indianapolis, IN),
0.5 mM dithiothreitol] and pelleted by centrifugation for 10 min at 12 000
g
at 4oC. The supernatant was recovered as the nuclear extract and protein
concentrations were determined by a modified Bradford method (
21
) (BioRad, Richmond, CA).
A 53 bp fragment of the
mdr2
promoter (-279 to -227) was obtained by cutting a larger PCR fragment with the
restriction enzyme
Mlu
I. This fragment was radiolabeled with [[alpha]-
32
P]dCTP using the Klenow fragment of DNA polymerase I (
22
). The probe was purified on a 12% polyacrylamide gel and eluted into 10 mM Tris-HCl, pH 7.4, 1 mM EDTA. Purified Sp1 protein (0.5 footprinting units;
Promega Corp., Madison, WI) or 2 [mu]g nuclear extract protein was incubated in 10 [mu]l binding buffer (12 mM HEPES, 5 mM MgCl
2
, 4 mM Tris, pH 7.9, 100 mM KCl, 0.6 mM EDTA, 0.6 mM dithiothreitol, 12%
glycerol) (
20
) with 0.5 [mu]g poly(dA[middot]dT)[middot]poly(dA[middot]dT), 0.5 [mu]g bovine serum albumin and with or without
competitor for 5 min and then 0.015 pmol probe were added and the incubation
continued for 20 min. In supershift experiments, Sp1 antibody (Santa Cruz
Biotechnology, Santa Cruz, CA) was added at this time and the incubations were
continued for an additional 60 min on ice. Two different 22 bp oligonucleotide competitors were used: one contained a wild-type Sp1 consensus sequence, the other was identical to the first except for a
GG -> TT substitution in the Sp1 consensus site (Santa Cruz Biotechnology, Santa Cruz, CA). Probe and probe-protein complex were resolved on a Tris-glycine 4% polyacrylamide gel containing 2.5% glycerol. Gels were dried and analyzed by
phosphorimager using ImageQuant software (Molecular Dynamics, Sunnyvale, CA).
Schneider's
Drosophila
line 2 cells were maintained in Schneider's
Drosophila
medium supplemented with 10% heat-inactivated fetal bovine serum, 2 mM glutamine, 50 [mu]g/ml Gentamicin. The cells were plated at 1 * 10
6
/100 mm dish and transfected by calcium phosphate precipitation (
18
) 16 h later. Cells were transfected with 10 [mu]g luciferase constructs and 2 [mu]g either pP
ac
Sp1, pP
ac
Sp1N539 or the empty vector pP
ac
U+Nde. The pP
ac
vectors are expression vectors which contain the
Drosophila
actin 5C promoter and were kindly provided by Dr Robert Tjian (
23
). The pP
ac
Sp1 vector expresses a protein of 696 amino acids which exhibits wild-type activity. The pP
ac
Sp1N539 vector expresses a Sp1 protein which has 157 amino acids of the C-terminus of the protein deleted. This deleted region contains three zinc finger DNA binding domains essential for Sp1-mediated transcriptional activation. Co-transfections were also performed with the Sp1 constructs and
either the empty luciferase vector pXP1 or the positive control pGL2-Control (Promega Corp., Madison, WI). Transfected cells were harvested 48
h after transfection by washing in cold PBS and then lysing with 0.1 M sodium
phosphate, pH 7.4, 1 mM dithiothreitol, 1% Triton X-100. Luciferase activity and protein concentrations were measured as
described above.
Screening of a rat genomic library with a 5' fragment of the rat
mdr2
cDNA identified several bacteriophage clones which contained 5' genomic regions of this gene. Following further characterization by
Southern blot analysis, a 1572 bp fragment was subcloned and sequenced (Fig.
1
). This sequence was unambiguously identified as
mdr2
since it contained a large region of nucleotides which overlap with the
previously cloned cDNA. The sequence of the 1572 bases of 5' non-coding region of the rat
mdr2
gene has been submitted to GenBank and has been assigned the accession number
U37694. The numbering scheme is based on designating the start of translation
+1. The nucleotides from -7 to -192 were identified as intron, since they were not present in the
cDNA (
10
). The sequence contains a number of putative transcription factor binding
sites. In particular, the sequence is rich in guanine and cytosine residues and
has four Sp1 transcription factor consensus elements. Other putative consensus binding sites were also identified, such as those for the AP-1 and AP-4 transcription factors. Large portions of the sequence exhibit a
high degree of sequence identity with the mouse and human
mdr2
/MDR2 promoters (Fig.
1
).
Recent experiments identifying the
mdr2
P-glycoprotein as a transmembrane phospholipid transporter have emphasized
the importance of understanding regulation of expression of this gene. The experiments presented here represent the first functional characterization
of the rat
mdr2
promoter and demonstrate that the transcription factor Sp1 is important for
transcriptional activity of this gene. Sequence analysis of the rat
mdr2
gene did not identify any strong TATA element consensus sites, however, the
promoter does have a high GC content. Similarly, the sequence of the mouse and
human promoters have recently been determined (
24
). These promoters are also GC-rich and contain no TATA box, however, no detailed analysis of these
promoters has yet been reported. Deletion analysis of the rat
mdr2
promoter revealed an incremental decrease in activity as the promoter was
reduced in size from the 5'-end. This is consistent with initiation of transcription occurring
at a variety of sites along the length of the promoter. Stepwise deletion of the promoter would sequentially eliminate these transcription start points, thus providing fewer opportunities
to initiate new transcripts and therefore leading to an overall decrease in
expression from the promoter. A number of genes which lack TATA elements have
also been shown to have multiple start sites, including the rat TGF[alpha] gene (
25
), the human MDR2 gene (
24
), the human multidrug resistance-associated protein (
26
) and the hamster
mdr1a
(
pgp1
) gene (
27
).
The presence of several Sp1 consensus sites in the
mdr2
promoter suggested that this transcription factor might play a role in
regulation of expression of this gene. We have shown that the most 3' of these sites binds Sp1 protein and that expression of Sp1 in cells
normally lacking this transcription factor causes an increase in expression
from a promoter construct containing this region. Furthermore, mutation of this
site prevents it from competing with the wild-type sequence for Sp1 binding and reduces the activity and inducibility of
this site. Mutation of this site also reduces transcription from the basal
mdr2
promoter in cells which normally express this gene, thereby strengthening the physiological relevance of our findings. This site is well conserved in the rat, mouse and human
mdr2
/MDR2 promoters and falls close to likely transcription start points (see Fig.
1
). In the case of the human promoter several transcription start points have
been identified 30-80 bases downstream of this particular Sp1 site (
24
). Sp1 has been shown to play an important role in establishing accurate
transcription initiation in other TATA-less promoters. For example, Sp1 consensus sites play a major role in the selection of the start site of the hamster CAD gene (
28
), the rat TGF[alpha] gene (
29
), the rat insulin-like growth factor binding protein-2 gene (
30
) and the human adenosine deaminase gene (
31
).
Regulation of the rat
mdr2
gene is unchanged by exposure to drugs. This is in sharp contrast to the rat
mdr1b
gene, which increases expression in response to a variety of xenobiotic stimuli
(
32
-
36
). The rat
mdr1b
promoter differs from the
mdr2
promoter in that it contains a TATA consensus element and employs a single
transcription start point both under basal and induced expression conditions (
32
). Although the coding regions of the
mdr1b
and
mdr2
genes share a high degree of sequence identity, their functions appear to be
different and so the divergence in their regulation is not surprising.
mdr2
expression in the rat increases after partial hepatectomy or carbon
tetrachloride-induced hepatic damage (
10
,
15
). This suggests that
mdr2
expression increases during times of cell growth and proliferation. It has
recently been shown that Sp1 plays a role in mediating the activation of growth-responsive genes, including human MDR1 (
37
). Sp1 is hypophosphorylated during liver regeneration and this leads to greater
DNA binding and transactivation activities (
38
). Since we have shown that
mdr2
is regulated by Sp1, it is possible that the increased DNA binding activity of
Sp1 during liver regeneration increases expression of
mdr2
.
In conclusion, we have identified the basal promoter of the rat
mdr2
gene. We have shown that transcription is initiated at several sites on the
promoter and that the transcription factor Sp1 regulates transcription of the
minimal
mdr2
promoter. Several other Sp1 consensus sites can be identified on the promoter
and future work will establish what role these play in regulation of this gene.
A number of other transcription factor consensus sites can be identified in the
promoter sequence and it is likely that some of these play a role in
controlling expression of the
mdr2
gene. We are investigating which of these additional transcription factors regulate the basal, growth-stimulated and tissue-specific expression of
mdr2
.
REFERENCES
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