ABSTRACT
Rev-erbA
[alpha]
and RVR/Rev-erb
[beta]
/BD73 are orphan steroid receptors that have no known ligands in the `classical
sense'. These `orphans' do not activate transcription, but function as dominant
transcriptional silencers. The thyroid hormone receptor (TR) and the retinoic
acid receptor (RAR) act as transcriptional silencers by binding corepressors
(e.g. N-CoR/RIP13 and SMRT/TRAC-2) in the absence of ligands. The molecular basis of repression by
orphan receptors, however, remains obscure, and it is unclear whether these
corepressors mediate transcriptional silencing by Rev-erbA
[alpha]
and RVR. Recently, two new variants of N-CoR have been described, RIP13a and RIP13
[Delta]
1. The characterisation of these splice variants has identified a second
receptor interaction domain (ID-II), in addition to the previously characterised interaction domain (ID-I). This investigation utilised the mammalian two hybrid system and
transfection analysis to demonstrate that Rev-erbA
[alpha]
and RVR will not efficiently interact with either ID-I or ID-II separately from RIP13a or RIP13
[Delta]
1. However, they interact efficiently with a domain composed of ID-I and ID-II from RIP13a. Interestingly, the interaction of Rev-erbA
[alpha]
and RVR is strongest with ID-I and ID-II from RIP13
[Delta]
1. Detailed deletion analysis of the orphan receptor interaction with RIP13/N-CoR rigorously demonstrated that the physical association was critically
dependent on an intact E region of Rev-erbA
[alpha]
and RVR. Over-expression of the corepressor interaction domains (i.e. dominant negative
forms of N-CoR/RIP13) could alleviate orphan receptor-mediated repression of
trans
-activation by GALVP16. This demonstrated that these regions could function as anti-repressors. In conclusion, these data from two independent
approaches demonstrate that repression by Rev-erbA
[alpha]
and RVR is mediated by an interaction of ID-I and ID-II of N-CoR, RIP13a and
[Delta]
1 with the putative ligand binding domain of the orphan receptors.
Members of the steroid/thyroid hormone nuclear receptor (NR) superfamily bind
specific DNA elements and function as ligand activated transcription factors (
1
,
2
). This group includes the `orphan receptors' which have no known ligands in the
`classical sense' and appear to be the ancient progenitors of this receptor
superfamily. The Rev-erb family of proteins are orphan members of the receptor superfamily. Two
isoforms of the Rev-erb family have been isolated from mammalian genotypes, Rev-erbA[alpha] (
3
) [also known as Ear-1 (
4
)] and RVR (
5
) [also known as Rev-erb[beta] (
6
,
7
) and BD73 (
8
)]. Major differences between the two isoforms occur within the hyper-variable A/B and D regions of the proteins (
8
). Both isoforms are expressed in a wide range of tissues and are present in all
major organs. Rev-erbA[alpha] mRNA is upregulated during adipocyte differentiation but repressed
during myogenesis (
9
,
10
). These orphan receptors are closely related to the ROR/RZR[alpha] gene family (retinoic acid receptor related orphan receptor) and the
Drosophila
orphan receptor, E75A, particularly in the DNA-binding domain (DBD) and the putative ligand-binding domain (LBD) (
5
,
7
,
8
). RVR and Rev-erbA[alpha] bind as monomers to an asymmetric (
A
/
T
)
6
RGGTCA motif (
8
,
11
). The Rev-erb family has also been demonstrated to bind as homodimers to novel HREs
consisting of two tandemly arranged AGGTCA motifs, separated by 2 bp with
unique 5' flanking and spacer nucleotides (RevDR-2) (
12
,
13
). Reports on the transcriptional properties of the Rev-erb family were initially conflicting. Rev-erbA[alpha] was first reported to act as a constitutive activator of
transcription through its cognate monomeric asymmetric motif (
11
). Recently, we and other groups have demonstrated that members of the Rev-erb family are, in fact, dominant repressors of transcription (
5
,
7
,
8
,
10
,
12
,
14
). We have further characterised the repression domain of RVR and Rev-erbA[alpha] to a minimal region [~35 amino acids (aa)] in the E-domain, that is highly conserved between Rev-erbA[alpha] and [beta] (97%). This region spans the LBD-specific signature motif, (
F
/
WAK
XXXX
F
XX
L
XXX
DQ
XX
LL
), helix 3, Loop3-4, helix 4 and 5 (identified in the crystal structures of the steroid
receptor LBDs) (
14
,
15
).
The ability of classical steroid receptors to repress basal transcription has
long been established (
16
-
18
). The recent characterisation of the co-repressors, N-CoR and SMRT/TRAC-2 that interact with unliganded thyroid hormone receptor (TR)
and retinoic acid receptor (RAR), has shed some light on the mechanism of NR
repression (
19
-
22
). However, the molecular basis of repression by these orphans remains obscure.
Furthermore, it is unclear whether these corepressors are involved in
transcriptional silencing by Rev-erbA[alpha] and RVR. Very recently, two variant forms of N-CoR have been identified, RIP13a and RIP13[Delta]1, that are products of alternate promoter utilisation
and alternate splicing (
23
). Detailed analysis has identified two interaction domains (ID-I and ID-II) in N-CoR/RIP13 that interact with nuclear receptors (
23
). Thus the present studies investigated whether the Rev-erb family interacted
in vivo
with either ID-I or ID-II from N-CoR/RIP13a and [Delta]1. We demonstrated that the physical association of the
orphan receptors with N-CoR/RIP13 requires both interaction domains and the E-region of Rev-erbA[alpha] and RVR. Furthermore, expression of dominant negative
forms of N-CoR/RIP-13 could override repression of
trans
-activation by the Rev-erb gene family and function as anti-repressors.
GMUQ251 5'-CGCGGATCCCACCATGGAGCTGAACGCAGGAGG-3'
GMUQ252 5'-CGCGGATCCTTAAGGATGAACTTTAAAGGC-3'
GMUQ265 5'-CGCGGATCCGTTCACGAGATGCTGTTCGAT-3'
GMUQ297 5'-GCGAATTCACCNC
A
/
T
A
/
G
TCN
G
/
C
A
/
T
NA
A
/
G
NGT
T
/
C
TC
G
/
A
TA
T
/
C
TG-3'
GMUQ301 5'-GCGCGTCGACATATG
T
/
A
CTG
G
/
T
A
/
G
CA
T
/
G
GA
A
/
G
ATCTGGGAAG-3'
GMUQ302 5'-GCGTCTAGATGA
A
/
C
GCAAA
T
/
G
CG
T
/
C
ACCAT
T
/
C
A
A
/
G
A
/
C
A-3'
GMUQ303 5'-GCGCGTCGACATATGTTTGC
A
/
C
AA
G
/
A
A
/
C
G
/
A
GAT
T
/
C
CC
T
/
C
GGC-3'
GMUQ304 5'-GCGTCTAGAAGC
T
/
C
TT
T
/
A
A
A
/
G
CAG
A
/
G
T
/
G
T
G
/
C
ACCTG-3'
GMUQ330 5'-GCG GAA TTC ACC ATG CCC CAG ATG GAT GTT TCC-3'
GMUQ331 5'-GCG GAA TTC TCA CTC ATA GGG CTC TGA TGG-3'
The expression plasmids pGAL0 (
24
), pNLVP16 (
25
), pGALVP16 (
10
) and pG5E1b-CAT (
26
) have been described elsewhere. pGAL0 contains the GAL4 DBD, pNLVP16 contains
the acidic activation domain of VP16 and pGALVP16 contains the GAL4 DBD linked
to the acidic activation domain of VP16.
The construction of the following GAL4 and VP16 chimeric expression vectors have
been described elsewhere (
15
), GAL4-ID-I [GAL-NCoR (ID)], VP16-mRXR[gamma], VP16-cTR[alpha], VP16-Rev (VP16-Rev aa 21-614), VP16-Rev CDE
(VP16-Rev aa 107-614), VP16-Rev DE (VP16-Rev aa 290-614), VP16-Rev E (VP16-Rev aa 437-614), VP16-Rev E-509 (VP16-Rev aa 509-614), VP16-Rev (aa 455-488).
For construction of the following VP16-Rev chimeric expression vectors, the following primers were used to amplify regions of Rev-erbA[alpha] from GV-Rev aa 437-614 (
10
) using
Pfu
DNA polymerase (Stratagene); VP16 Rev aa 437-488 (GMUQ301 and GMUQ302); VP16 Rev aa 437-476 (GMUQ301 and GMUQ304). These fragments containing primer-derived 5'
Sal
I and 3'
Xba
I were digested with
Sal
I/
Xba
I and ligated to
Sal
I/
Xba
I-digested pNLVP16. The remaining VP16 chimeras were created by inserting
fragments of Rev-erbA[alpha] into the pNLVP16 vector. To construct VP16-Rev AB (VP16-Rev aa 21-125), pGAL4-Rev (aa 21-125) (
10
) was cleaved with
Sal
I/
Xba
I generating a 353 bp insert, which was then cloned into
Sal
I/
Xba
I-digested pNLVP16. To construct VP16-Rev C (VP16-Rev aa 107-199), VP16-Rev CDE (VP16-Rev aa 107-614) (
15
) was cleaved with
Sal
I/
Xba
I generating a 277 bp insert, which was cloned into
Sal
I/
Xba
I-digested pNLVP16. To construct VP16-Rev CD (VP16-Rev aa 107-290), VP16-Rev CDE (VP16-Rev aa 107-614) (
15
) was cleaved with
Nde
I-
Eco
RV; the resulting 548 bp fragment was then end filled with Klenow and ligated into
Xho
I-digested Klenow end filled pNLVP16.
Two primers, GMUQ251 and GMUQ252, were used to amplify the 1731 bp open reading
frame of RVR from the parent plasmid pCMXRVR (
5
) with
Ult
ma DNA polymerase (Perkin Elmer). This fragment containing primer-derived
Bam
HI ends was cloned into
Sma
I-digested pBS and was called pBS-RVR. VP16-RVR chimeras were created by inserting fragments of RVR into
pNLVP16. To create VP16-RVR (VP16-RVR aa 1-576), the 1745 bp fragment of
Bam
HI-digested pBS-RVR was end-filled with Klenow and ligated with
Sal
I-digested, Klenow end filled pNLVP16. To construct VP16-RVR AB (VP16-RVR aa 1-88), the 1745 bp fragment of
Bam
HI-digested pBS-RVR was digested with
Hin
fI and the 273 bp fragment was end filled with Klenow and cloned into
Sal
I-digested, Klenow end filled pNLVP16. VP16-RVR ABCD (VP16-RVR aa 1-276) was created by inserting the Klenow end filled,
837 bp fragment of a
Sph
I/
Bgl
II digestion of the 1745
Bam
HI fragment from pBS-RVR into
Sal
I-digested, Klenow end filled pNLVP16. To construct VP16-RVR DE (VP16-RVR aa 170-576), a PCR fragment was amplified from pCMX-RVR with
Ult
ma DNA polymerase using the primers GMUQ265 and GMUQ252. This fragment was
digested with
Bam
HI and cloned into
Bam
HI-digested pBSK
+
and was called pBSK-RVR DE (aa 170-576). VP16-RVR DE was prepared by ligating the end filled, 1236 bp
Bam
HI fragment of pBSK-RVR DE (aa 170-576) into
Xho
I-digested, Klenow end filled pNLVP16. To construct VP16-RVR D (VP16-RVR aa 178-353) and VP16-RVR E (VP16-RVR aa 355-576), the 1236 bp insert generated
by
Bam
HI digestion of pBSK-RVR DE (aa 170-576) was digested with
Eco
RI and the 564 and 675 bp fragments were end filled with Klenow and cloned into
Xho
I-digested, Klenow end filled pNLVP16.
For construction of the following GV-RVR chimeras, primers were used to amplify regions of RVR from GALVP16-RVR E (GV-RVR aa 355-576) (
14
) with
Pfu
DNA polymerase (Stratagene); VP16-RVR (aa 394-449) (GMUQ301 and GMUQ302); VP16-RVR (aa 394-437) (GMUQ301 and GMUQ304); VP16-RVR (aa 416-449) (GMUQ303 and GMUQ302). These
fragments containing primer-derived 5'
Sal
I and 3'
Xba
I ends were digested with
Sal
I/
Xba
I and ligated to
Sal
I/
Xba
I-digested pNLVP16.
ID-II and ID-II[Delta]1 were amplified using
Pfu
DNA polymerase from RIP13a and RIP13[Delta]1 (
23
), respectively, using the primers GMUQ 330 and GMUQ 331. ID I+II and ID I+II[Delta]1 were amplified using
Pfu
DNA polymerase from N-CoR/RIP13a and RIP13[Delta]1 using primers GMUQ 330 and GMUQ 297. The resulting products were
cleaved with
Eco
RI and ligated with
Eco
RI-cleaved pGAL0 or pSG5 (Stratagene). All GAL, VP16 and GALVP16 and GAL-N-CoR constructs were sequenced to confirm the reading frame.
Plasmids [pG5E1bCAT reporter (3 [mu]g) and GAL-IDs (1 [mu]g)] were co-transfected/expressed into human choriocarcinoma JEG-3 cells with either VP16 or VP16-Rev or VP16-RVR plasmids (1 [mu]g), then assayed with respect to their
ability to
trans
-activate the reporter (pG5E1bCAT). JEG-3 cells were cultured for 24 h in Dulbecco's Modified Eagle's Medium
(DMEM) containing 5% charcoal stripped foetal calf serum (FCS). Each six well
dish of JEG-3 cells (60-70% confluence) was transiently transfected with plasmid DNA by the DOTAP (Boehringer Mannheim)-mediated procedure as described previously (
27
,
28
). The DNA/DOTAP mixture was added to the cells in 3 ml of fresh medium. After
24 h, fresh medium was added and the cells were harvested for the assay of CAT
enzyme activity 24 h after the addition of fresh medium. Each transfection
experiment was independently performed at least three times to overcome the
variability inherent in transfections.
Each 35 mm dish (Falcon) of COS-1 cells (60-70% confluence) was transiently transfected with 3 [mu]g of reporter plasmid DNA (pG5E1bCAT) expressing
chloramphenicol acetyl transferase (CAT), 1 [mu]g of GALVP16 chimeras and 1 [mu]g of pSG5 expression vectors by the DOTAP-mediated procedure above. The DNA/DOTAP mixture was added to the
cells in 3 ml of fresh medium. After 24 h, fresh medium was added to the cells
and cells were harvested for the assay of CAT enzyme activity 36-48 h after the transfection. Each transfection was performed at least
three times to overcome the variability inherent in transfections.
Cells were harvested, normalised to protein concentration (
29
), and CAT activity measured as previously described (
30
). Aliquots of the cell extracts were incubated at 37oC, with 0.1-0.4 [mu]Ci of [
14
C]chloramphenicol (ICN) in the presence of 5 mM acetyl CoA in 0.25 M Tris-HCl pH 7.8. After a 1-4 h incubation period, the reaction was stopped by the addition of
1 ml ethyl acetate which was used to extract the chloramphenicol and its
acetylated forms. Extracted materials were analysed on Silica gel thin layer
chromatography plates as described previously (
30
). Quantitation of CAT assays was performed by an AMBIS [beta]-scanner.
N-CoR has been demonstrated to mediate inhibition of gene transcription by
the thyroid hormone and retinoic acid receptors. Whether N-CoR interacts with orphans such as Rev-erbA[alpha] and RVR to mediate the potent transcriptional repression
characteristics of these `orphans' is unclear. To further characterise transcriptional regulation by the Rev-erb family, we investigated whether these orphan receptors interacted with N-CoR/RIP13
in vivo
. Protein-protein interaction assay systems were developed initially in yeast, and refined
further for the study of receptor interactions in transfected mammalian cells (
15
,
31
). In these experiments the yeast GAL4 DNA binding domain is fused to various
receptor domains (e.g. AB or LBD) and expressed in transfected cells with a
second type of hybrid receptor linked to the
trans
-activation domain of herpes simplex virus VP16.
Trans
-activation of a CAT reporter gene downstream of GAL4 binding sites fused
to the E1b promoter is only achieved when the co-expressed receptors physically interact.
We constructed chimeric GAL4 plasmids that contained interaction domain I (ID-I in N-CoR, RIP13a and RIP13[Delta]1 are identical), interaction domain II (ID-II) and ID-I+II. These plasmids were designated, GAL4-ID-I, GAL4-ID-II and GAL4-ID-I+II. We also
constructed GAL4-ID-II[Delta]1 and GAL4-ID-I+II[Delta]1 (see Fig.
1
for specific details). ID-I corresponds to the region between amino acids 2218 and 2451 of N-CoR (
19
), and to amino acids 1164-1397 in RIP13a (Fig.
1
). ID-II corresponds to the region between amino acids 1848 and 2163 of N-CoR and to amino acids 794-1109 in RIP13a. ID-II from RIP13[Delta]1 has an internal deletion of 120 aa, that lacks
aa 805-925 from the RIP13a ID-II (Fig.
1
). Seol
et al
. (1996) mapped/ delimited the minimal ID-II domain between amino acids 1010/1089 and 2063/2142 in RIP13 and N-CoR, respectively, hence our ID-II region encompasses this minimal domain.
To characterise further the interaction of Rev-erbA[alpha] and RVR with the ID-I+II interaction domain from N-CoR/RIP13, we investigated the potential of various
domains from each of the orphan receptors to interact with N-CoR in the mammalian two hybrid assay. The chimeric construct consisting
of the yeast GAL4 DNA binding domain fused to the interaction domain I+II[Delta]1 (ID) was expressed in cells with a set of chimeric constructs
containing full length or various deletions of the Rev-erbA[alpha] receptor linked to the
trans
-activation domain of VP16 (Fig.
3
A). Consistent with the previous experiment, we saw a very strong increase in
CAT activity when the VP16-Rev construct was transfected with the GAL4-ID-I+II[Delta]1 construct. Furthermore, we observed very strong
interactions between the Rev-erbA[alpha] CDE, DE and E (aa 437-614) domains with ID-I+II[Delta]1, which suggested that the E-region is essential for binding to N-CoR/RIP13 (Fig.
3
B). In agreement with the above data, little or no CAT activity was observed
when we examined the ability of the Rev-erbA[alpha] AB, C, CD domains to interact with the N-CoR/RIP13 interaction domains (Fig.
3
B). Detailed attempts to delimit the domain within the E region of Rev-erbA[alpha] that interacted with N-CoR/RIP13 were unsuccessful and suggested that a structurally
intact ligand binding domain is critical for the interaction with the co-repressor (Fig.
3
B).
Figure
We similarly analysed a set of chimeric constructs containing full length or
various deletions of the RVR receptor linked to the
trans
-activation domain of VP16 (Fig.
4
A) in the mammalian two hybrid assay to interact with ID-I+II[Delta]1. Consistent with the previous experiment, we saw a very strong
increase in CAT activity when the VP16-RVR construct was transfected with the GAL4-ID-I+II[Delta]1 construct. Furthermore, we observed very strong
interactions between the RVR DE and E (aa 357-576) domains with ID-I+II[Delta]1, which suggested that the E-region is essential for binding to N-CoR/RIP13 (Fig.
4
B). In agreement with the above data, little or no CAT activity was observed
when we examined the ability of the RVR AB, ABCD and D regions to interact with
the N-CoR/RIP13 interaction domain (Fig.
4
B). Detailed attempts to delimit the domain within the E region of RVR that
interacted with N-CoR/RIP13 were again unsuccessful, and suggested that a structurally
intact E-region is critical for the interaction of RVR (like Rev-erbA[alpha]) with the co-repressor (Fig.
4
B).
Figure
In summary, the experiments indicated that E region from Rev-erbA[alpha] and RVR is necessary for the interaction of these orphan receptors
with N-CoR/RIP13. Interestingly, the original N-CoR studies indicated that N-CoR/RIP13 interacted with the hinge regions of TR/RAR (
19
), our studies in the mammalian two hybrid system clearly indicate that the D
region/hinge is not required, in agreement with the hypothesis put forward by
Wurtz
et al
. (
32
).
We have previously demonstrated that the E regions from the orphan receptors,
Rev-erbA[alpha] and RVR, when linked to the chimeric/potent
trans
-activator GALVP16, very efficiently repress its ability to constitutively activate the GAL4-dependent reporter, G5E1bCAT (
10
,
14
,
15
).
We investigated the ability of dominant-negative RIP13/N-CoR expression vectors (i.e. pSG5-ID-I+II[Delta]1 and pSG5-ID-II[Delta]1) versus native RIP13a and
RIP13[Delta]1, to affect the orphan receptor-mediated repression of GALVP16. This would demonstrate that N-CoR/RIP13a mediated the repression of GALVP16
trans
-activation by the orphan receptors, and that ID-I+II interacted with the orphan receptor E regions (by a different
assay). The experiment demonstrated that pSG5-ID-I+II[Delta]1 could function as an anti-repressor and partially alleviate (~30%) the orphan receptor-mediated repression of GALVP16
trans
-activation (Fig.
5
A). The plasmid, pSG5-ID-II[Delta]1, could not alleviate the RVR-mediated repression of GALVP16, as expected from the
mammalian two hybrid data. The native RIP13a and [Delta]1, that contained the functional interaction regions and repressor
domains, did not function as anti-repressors, as expected. Furthermore, these dominant-negative and native N-CoR/RIP13 expression vectors had no effect on the
trans
-activation by wild-type GALVP16 (Fig.
5
A). We then examined whether increasing amounts of the N-CoR/RIP13 interaction domain could restore >30% of the GALVP16 activity.
As controls, we examined the effects of the increased levels of the N-CoR/RIP13 interaction domain on activation by GALVP16 and the GAL4 DBD,
respectively (Fig.
5
B). Increased levels (3-fold) of the dominant negative ID-I+II[Delta]1 domain more efficiently alleviated RVR-mediated repression of GALVP16
trans
-activation (Fig.
5
B), whereas, the expression of the interaction domain had no effect on the
trans
-activation by GALVP16 or the GAL4 DBD. This suggested that transcriptional
silencing by the Rev-erb family of orphan receptors involves N-CoR/RIP13.
Figure
It has been demonstrated recently that the co-repressors, N-CoR and SMRT/TRAC-2, mediate transcriptional silencing by unliganded TR and RAR
(
19
-
23
). These studies shed light on the mechanism of nuclear receptor repression,
however, it was unclear whether these corepressors mediated transcriptional
silencing by orphan steroid receptors, in particular, Rev-erbA[alpha] and RVR.
We had previously demonstrated that the interaction domain-I (aa 2218-2451) of the nuclear receptor co-repressor, N-CoR, did not efficiently associate with Rev-erbA[alpha], and suggested that transcriptional
silencing by Rev-erbA[alpha] was not mediated by an interaction with N-CoR (
15
). Our study did not rule out the possibility that other domains of the co-repressor may interact with Rev-erbA[alpha], or that novel co-repressors were involved in transcriptional repression
by Rev-erbA[alpha]. During the course of the latter investigation it became evident
that the co-repressors were a new family of regulators with alternately spliced
variants (
22
). Two variant forms of N-CoR have been identified, RIP13a and RIP13[Delta]1, that are products of alternate promoter utilisation and
alternate splicing (Fig.
1
) (
23
). Although RIP13a and [Delta]1 have short unique N-terminal domains that substitute for the first ~1000 aa of N-CoR (that encode the two repression domains), they
retain a domain that includes seven copies of a repeated motif, G-s-l-s/t-q-G-t-p, that is present in SMRT and is
associated with repressor function (
22
,
23
). Detailed analysis of the splice variants identified a second interaction
domain (ID-II), between aa 1010/1089 and 2063/2142 in RIP13a and N-CoR, respectively, that is located upstream of the previously
characterised interaction domain (ID-I) (
23
). These latter studies prompted us to examine the molecular basis of Rev-erbA[alpha] and RVR transcriptional repression in the light of these exciting
developments.
Our study demonstrates clearly that N-CoR/RIP13 efficiently interacts with Rev-erbA[alpha] and RVR
in vivo
. Although we clearly show that each recently characterised interaction domain
(ID-I and ID-II) in the co-repressor can independently interact with TR, both ID-I and ID-II are required for a significant interaction with
the orphan receptors Rev-erbA[alpha] and RVR. Furthermore, the investigation revealed that the [Delta]1 splice variant very efficiently interacted with the orphan
receptors and RXR. This suggested that the region between aa 805 and 925 in
RIP13a (that is deleted in the [Delta]1 isoform) may selectively discriminate between specific receptors (e.g.
TR or RXR), and that the splice variants have different functions with respect
to ligand-activated and orphan steroid receptors. This indicates that the co-repressor splicing variants may have cell/receptor specific targets
depending on spatio-temporal expression. N-CoR and SMRT/TRAC-2 are ubiquitously expressed proteins, however, the
expression patterns of the splice variants RIP13a, RIP13[Delta]1 and TRAC-1 have not been studied. Furthermore, the expression of this
expanding gene family during embryogenesis has not been investigated.
The interaction of these orphan receptors with the co-repressors is critically dependent on an intact E-region of Rev-erbA[alpha] and RVR (the E-region begins with helix 3 as suggested by Wurtz
et al
.). Our investigation revealed that the hinge region did not physically
associate with the co-repressors
in vivo
, neither was it required for an efficient interaction
in vivo
. Wurtz
et al
. (
32
) argued that they thought it was unlikely that N-CoR interacted with helix 1 in the hinge region, because the triple
mutation used to map N-CoR binding would disrupt the interaction of helix 1 with the LBD core,
dislodge H1 from its wild-type position and the specified amino acids that are engaged in internal contacts. Our data suggests that the interaction of N-CoR with Rev-erbA[alpha] and RVR does not require the domain of these orphans
that would putatively form helix 1 and 2.
Interestingly, we found that deletion of the region between aa 437 and 509 from
the entire E-region (aa 437-614) resulted in a domain that was unable to interact with N-CoR/RIP13
in vivo
. We have previously demonstrated that aa 437-509 mediate the repression of
trans
-activation by GALVP16. However, we note that independently, this short
domain cannot interact with ID-I and ID-II of N-CoR/RIP13
in vivo
.
Our study also demonstrated that over-expression of dominant negative forms of N-CoR/RIP13 could alleviate orphan receptor-mediated repression of GALVP16
trans
-activation
in vivo
. This strongly suggested that transcriptional silencing by Rev-erbA[alpha] and RVR involves N-CoR/RIP13. Furthermore, this demonstrates that regulation of
orphan receptor transcriptional silencing may involve splice variants, such as
TRAC-1, that could putatively function as `anti-repressors'.
Comprehensive analysis of repression will require a complete interaction
analysis of all the putative co-regulators (e.g. N-CoR, RIP13a and [Delta]1, TRAC-1 and TRAC-2, p300/CBP, SRC-1, SUG-1/Trip-1 etc.) that may interact with
the Rev-erb family. The transcriptional properties of the orphan receptors are
probably regulated by a dynamic balance of positive and negative co-regulators that interact with the basal transcription machinery.
This investigation was supported by the National Health and Medical Research
Council (NHMRC) of Australia. The Centre for Molecular and Cellular Biology is
the recipient of a Australia Research Council (ARC) special research grant. We
thank Drs W. Chin and V. Giguère for the Rev-erbA[alpha] and RVR cDNA clones. Special thanks to Drs David Moore and
Wongi Seol who communicated data and plasmids prior to publication. All the
authors contributed equally to this study.



REFERENCES
Return
