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© 1997 Oxford University Press 379-388

Footnote

HTLV-I Tax self-association in optimal trans -activation function

HTLV-I Tax self-association in optimal trans -activation function Dong-Yan Jin and Kuan-Teh Jeang*

Molecular Virology Section, Laboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda , MD 20892-0460, USA

Received September 4, 1996; Revised and Accepted November 12, 1996

ABSTRACT

HTLV-I Tax protein is a potent transcriptional activator of viral and cellular genes. Tax does not bind DNA directly but interacts through protein-protein contact with host cell factors that recognize the viral long terminal repeat (LTR). Domains within Tax needed for protein-protein interaction have not been fully characterized. In studying transcriptional function in yeast cells, we unexpectedly found that Tax functions optimally not as a monomer, but as a homodimer. Here we have used the one hybrid and two hybrid genetic approaches in yeast to investigate the region(s) within Tax necessary for self-association. Dimer formation was also confirmed biochemically by using electrophoretic mobility shift (EMSA) and supershift assays. Twenty two Tax point mutants were utilized to map relevant residues. Genetic results from this series of mutants revealed that a necessary region for dimerization is contained within a previously characterized zinc finger domain. Two loss-of-function Tax mutants, each poorly active when assayed individually, were found to have complementing activity when co-expressed together. This genetic complementation suggests a mechanism for trans -activation resulting from simultaneous but non-identical contact with a responsive target by each of two Tax monomers in a dimer.

INTRODUCTION

Human T cell leukemia virus type I (HTLV-I) is etiologically associated with adult T cell leukemia (ATL) and neurological disorders termed HAM/TSP (reviewed in 1 ). In addition to Gag, Pol and Env proteins common to other retroviruses, the HTLV-I genome encodes regulatory proteins such as Tax and Rex, which are crucial for virus replication and pathogenesis (reviewed in 2 ).

The 40 kDa Tax protein activates transcription of the viral genome through three imperfectly conserved 21 nt direct repeats in the viral long terminal repeat (LTR) ( 3 - 6 ). Tax also modulates the expression of other viruses, including the human immunodeficiency virus ( 7 ) and cellular genes including interleukin-2 ( 8 , 9 ), interleukin-2 receptor [alpha]-chain ( 8 , 10 ), granulocyte macrophage colony stimulating factor ( 11 ), c- fos ( 12 ) and [beta]-polymerase ( 13 , 14 ). Tax does not bind DNA directly, but can interact with cellular DNA binding proteins, including cAMP responsive element binding protein (CREB) ( 15 - 18 ), nuclear factor [kappa]B (NF-[kappa]B) ( 19 , 20 , reviewed in 21 ), serum response factor (SRF) ( 22 ) and TATA binding protein (TBP) ( 23 ). In one perspective, trans - activation by Tax is proposed to be mediated through direct protein contact with these sequence-specific DNA binding factors. Another perspective suggests that Tax facilitates/stabilizes the dimerization of transcription factors at the promoter ( 24 - 26 , reviewed in 27 ). Additional molecular mechanisms for Tax function have also been proposed ( 20 , 21 , 28 - 30 ).

Previously we have described aspects of Tax trans -activation in mammalian cells ( 15 , 17 , 31 - 35 ). In particular, we have focused on steps through which Tax communicates with the basal transcription machinery. Although conflicting findings exist, there is good evidence that Tax can be tethered to the promoter via contact with upstream transcription activators such as CREB ( 16 , 36 , 37 ). Other evidence suggests that Tax can also directly bind basal factors such as TBP ( 23 ). Taken together these findings suggest that the capacity for protein-protein contact might be an important functional component of the action of Tax. Such supposition is not surprising, since many important regulatory proteins, such as CREB, NF-[kappa]B and STAT, commonly employ homo- and hetero-dimerization as a means of regulating specificity and function ( 38 - 41 ).

Genetic studies in higher eukaryotic cells are complex and time consuming. Expression of Tax in budding yeast ( 42 - 44 ) could provide a simple and useful model system for clarifying molecular interactions within eukaryotes. Yeast and its associated genetics afford rapid and powerful means to dissect molecular processes at the promoter. With this in mind, we have employed yeast one hybrid and two hybrid assays ( 45 ) to explore intracellular Tax structure/function. In the course of these studies and in the process of investigating how Tax might contact cellular effectors (Jin and Jeang, in preparation), we found that this transcriptional activator functions optimally as a homodimer. We show here that Tax, when targeted to the promoter via the Gal4 DNA binding domain (Gal4bd), can potently activate transcription in yeast and that such activation is mediated through the formation of Tax-Tax dimers. Structure-function studies using 22 Tax mutants implicated an N-terminal zinc finger region in Tax ( 32 ) as being important for dimerization. Interestingly, we found that two loss-of-function Tax mutants were poorly active when expressed individually, but were highly active when co-expressed together. This complementation is consistent with a mechanistic model in which each monomeric Tax molecule in a homodimer exerts simultaneous but non-identical contact on a responsive target.

MATERIALS AND METHODS

Plasmids and yeasts

Yeast reporter strains Saccharomyces cerevisiae Y187 and HF7c have been described elsewhere ( 46 , 47 ). Strain Y187 expresses the Escherichia coli lacZ gene driven by the Gal4-responsive GAL1 promoter. Y187 is deleted in its endogenous gal4 gene. Strain HF7c expresses a HIS3 reporter gene under the control of the GAL1 promoter.

Wild-type and mutant Tax cDNAs have been described previously ( 33 , 48 ). Mutations are designated by the amino acid to be changed, the position of the residue and the replacement amino acid (e.g. Tax H52-Q). Amino acids that were removed in mutants are indicated in parentheses [e.g. Tax [Delta](3-10)]. Tax cDNAs were inserted in-frame into vectors pGBDT9 or pGAD424 ( 45 ; Clontech Laboratories Inc.) that express the Gal4bd (amino acids 1-147) or Gal4 activation domain (Gal4ad, amino acids 768-881). Fusion proteins produced from these vectors were targeted to the yeast nucleus using a nuclear localization sequence (NLS). Although Gal4bd has an intrinsic NLS, an NLS from the SV40 large T antigen (LT) was also added to the N-terminus of Gal4ad.

Gal4bd-p53 and Gal4ad-LT were from Clontech. A human cDNA encoding TBP was a gift from A.J.Berk ( 49 ). pGBDTax-T was constructed by replacing the P ADH1 promoter in pGBDT9/Tax with a transcriptionally more active wild-type *P ADH1 promoter from pGAD GH (Clontech). pGBDTax-L and pGBDTax-H were constructed by replacing the TRP1 selective marker in pGBDTax-T with LEU2 and HIS1 respectively. Tax-expressing plasmids IEX, IEX Q9-G and IEX S132-A and reporter plasmid pU3RCAT, in which the CAT cDNA is positioned downstream of the HTLV-1 LTR, have been described elsewhere ( 33 ).

Reporter assays

Yeasts were transformed by the LiAc method of Gietz et al . ( 50 ). [beta]-Galactosidase activity was measured in strain Y187. Expression of His3p was tested in strain HF7c. A qualitative colony-lift filter assay was performed using 5-bromo-4-chloro-3-indolyl-[beta]-D- galactopyranoside (X-gal) as substrate. Briefly, yeast transformants were transferred to Whatman No. 1 filter paper, permeabilized by submerging in liquid nitrogen, allowed to thaw at room temperature and placed onto another filter presoaked in Z-buffer (60 mM Na 2 HPO 4 , 40 mM NaH 2 PO 4 , 100 mM KCl, 1 mM MgSO 4 and 50 mM [beta]-mercaptoethanol) containing 0.5 mg/ml X-gal. Strongly positive colonies (++++) appeared as dark blue within 20 min. Positives (+++) were blue within 1 h and weak positives (++) were blue in 6 h. Overnight incubation produced some very weak positives (+) with a light blue color.

For quantitative [beta]-galactosidase assay, chlorophenol red-[beta]-D- galactopyranoside (CPRG) was used as substrate. Overnight cultures grown in SD selective medium (0.67% bacto-yeast nitrogen base, 2% glucose, supplied with dropout nutrient solution missing one or more amino acids) were diluted 5-fold in YEPD rich medium (1% bacto-yeast extract, 2% bacto-peptone, 2% glucose) and were grown until mid log phase (OD 600 of 0.5-0.8). Yeast cells were disrupted by freeze-thaw and by additional vortexing with acid-washed glass beads. [beta]-Galactosidase activity was assayed using the method of Miller ( 51 ), except that CPRG was used for color development and the reaction buffer consisted of 100 mM HEPES, 150 mM NaCl, 2 mM MgCl 2 , 0.5 mM L-aspartate, 1% bovine serum albumin and 2 mM CPRG. [beta]-Galactosidase activity was expressed as relative CPRG units, defined in the same manner as Miller units ( 51 ). Numbers presented in the tables throughout are representative of triplicate determinations of duplicate transformants.

For detection of His3p expression, yeast transformants were tested for growth on SD medium without histidine. Positive colonies (+) that survive histidine dropout appeared within 48 h, while no growth was observed after 60 h on negative plates (-). Indicated amounts of 3-aminotriazole (3AT) were added to the medium specifically to assess His3p expression. Growth in escalating amounts of 3AT requires induced levels of His3p and the degree of 3AT resistance reflects the degree of HIS3 transcription ( 50 ).

HeLa cells were grown in Dulbecco's modified Eagle's medium supplemented with 2 mM L-glutamine, 10% fetal calf serum, 100 U/ml penicillin/streptomycin. For chloramphenicol acetyltransferase (CAT) assay, cells were seeded at 5 * 10 5 cells/well into six-well culture plates. Calcium phosphate transfection was performed and CAT activity was assayed as previously described ( 35 ).

Extract preparation

Yeast whole cell extracts were prepared from yeast cells (strain Y187) grown in SD medium. Cells were resuspended in a 1/10 vol. of extraction buffer (20 mM HEPES, pH 7.5, 400 mM NaCl, 1 mM EDTA, 10% glycerol, 1 mM dithiothreitol, 1 mg/ml aminoethyl benzenesulfonyl fluoride, 1 mg/ml leupeptin, 1 mg/ml pepstatin and 1 mg/ml aprotinin). An equal volume of acid-washed glass beads was added and the mixture was vortexed at 4oC for 5 min. The extract was separated from glass beads by sedimentation and was clarified further by centrifugation. Protein concentrations were determined by the Bradford dye binding procedure ( 52 ; BioRad) and were normalized by adding extraction buffer.

Western blotting

Proteins from yeast whole cell extract were trichloroacetic acid precipitated, washed in 80% acetone and resuspended in SDS gel loading buffer (60 mM Tris base, 2% SDS, 10% glycerol, 5% 2-mercaptoethanol). Samples containing equal amounts of protein (15 [mu]g) were separated by 12% SDS-PAGE and electroblotted onto Immobilon-P membranes (Millipore) using a Millipore semi-dry blotting apparatus as per the manufacturer's protocol. The blot was probed with a previously described rabbit anti-Tax polyclonal antibody ( 33 ) at 1:1000 dilution. Bands were visualized by chemiluminescence (Western-Light; Tropix Inc.) using goat anti-rabbit alkaline phosphatase-conjugated secondary antibody.

Electrophoretic mobility shift assay (EMSA)

Oligonucleotides 5'-AGCTCGGAAGACTCTCCTCCGGATCC-3' and 5'-AGCTGGATCCGGAGGAGAGTCTTCCG-3' were annealed to produce a consensus Gal4 binding site probe. The probe was labeled by filling-in using Klenow enzyme at 30oC for 30 min in the presence of [[gamma]- 32 P]dATP and unlabeled dGTP, dCTP and dTTP. Labeled probe was separated from unincorporated nucleotides through a Sephadex G25 spin column. Binding reactions were performed in 20 [mu]l volumes containing 20 [mu]g protein, 0.5 [mu]g poly(dI[middot]dC), 0.5 ng labeled probe in EMSA buffer (10 mM HEPES, pH 7.5, 4 mM Tris-HCl, pH 7.5, 5% glycerol, 50 mM KCl, 0.5 mM dithiothreitol, 1 mM EDTA and 100 [mu]g/ml bovine serum albumin). After incubation at room temperature for 30 min, the mixture was resolved in a 5% polyacrylamide gel with 0.25* TBE (Tris-borate EDTA; 1* TBE is 90 mM Tris-borate, 2 mM EDTA) as running buffer.

RESULTS

Definition of Tax activity in yeast

To verify yeast as an appropriate study model, we first defined Tax activity in this system. We fused the full-length Tax protein (amino acids 1-353) to the C-terminus of the Gal4 DNA binding domain (Gal4bd; amino acids 1-147). In this manner, we tested the ability of the fusion protein to stimulate transcription from reporter genes driven by the Gal4-responsive UAS. As a negative control, plasmids that express Gal4bd or a Gal4bd-p53 fusion ( 53 ) were tested in parallel. Additionally, plasmids known to be biologically active in this assay [e.g. Gal4bd fused with the Gal4ad (activation) domain and a Gal4bd-TBP fusion; 54 ] were used as positive controls.

Qualitative (filter assay, Table 1 ) and quantitative (CPRG units, Table 1 ) assays for [beta]-galactosidase activity in yeast Y187 and growth of transformed yeast HF7c in selective histidine dropout medium are summarized. In all experiments, Gal4bd-Tax activated the promoter-downstream reporter. In contrast, neither Gal4bd (Table 1 , line 1) nor Gal4bd-p53 (Table 1 , line 3) showed detectable activity. The level of activation by Galbd-Tax, although lower than that induced by native Gal4 (compare lines 2 and 5, Table 1 ), was comparable with that stimulated by a known activator, Gal4bd-TBP ( 54 ; compare lines 2 and 4, Table 1 ). Furthermore, when we increased the amount of Gal4bd-Tax produced by either using a stronger promoter (Fig. 1 , lane 2) or by expressing Gal4bd-Tax simultaneously from two or three stably transforming plasmids each with a different selectable marker (Fig. 1 , lanes 3 and 4), the level of [beta]-galactosidase activity was concordantly elevated (Fig. 1 ). Thus, under these conditions, there is a dose-dependent activation of transcription by Gal4bd-Tax.


Figure 1 . Dose-dependent activation of [beta]-galactosidase expression by Gal4bd-Tax. Yeast Y187 was transformed individually with pGBDT9/Tax, pBDTax-T, pGBDT9/Tax + pGBDTax-L or pGBDTax-T + pGBDTax-L + pGBDTax-H. The stably transformed yeasts were grown in selective medium and whole cell extracts were prepared from equal numbers of cells. Extracts containing equal amounts (15 [mu]g) of protein were resolved by SDS-PAGE. The amounts of Gal4bd-Tax (predicted size 57 kDa, indicated by an arrow) in the extracts were examined by Western blotting using an anti-Tax rabbit polyclonal antibody. The [beta]-galactosidase activity is expressed in CPRG units.

Others have described a HTLV-I LTR-dependent Tax activity in yeast. In one report, the HIS4 UAS was substituted with the 21 bp Tax-responsive repeats from the HTLV-I LTR. Tax was found to stimulate expression in a 21 bp-dependent manner by ~2- to 6-fold ( 43 ). In contrast, the level of activation by Gal4bd-Tax targeted to the UAS as observed here (Table 1 , CPRG units, compare lines 1 and 2; Fig. 1 B, compare lanes 1 and 4) was considerably higher than that reported for 21 bp-dependent Tax activation. Indeed, the present finding of a 21 bp-independent transcriptional activity of Tax in yeast is consistent with results from mammalian cells demonstrating that Tax can directly engage a minimal TATA promoter ( 23 , 33 , 36 , 55 ).

Table 1 . Gal4bd-Tax activates transcription of a minimal promoter in yeast
Line no.

Activator

lacZ filter assay

lacZ CPRG units

His3p growth test

1

Gal4bd

-

<1

-

2

Gal4bd-Tax

++

16.2

+

3

Gal4bd-p53

-

<1

-

4

Gal4bd-TBP

++

25.5

+

5

Gal4

++++

3600

+


Table 2 . Definition of Tax activity using 13 point mutants in yeast
Line

Activator

lacZ filter assay

lacZ CPRG units

His3p growth test

1

Gal4bd-Tax

++

16.2

+

2

Gal4bd-Tax Q9-G

+

2.6

-

3

Gal4bd-Tax C23-S

++

14.3

+

4

Gal4bd-Tax C29-S

-

<1

-

5

Gal4bd-Tax S32-A

++

19.9

+

6

Gal4bd-Tax C36-S

-

<1

-

7

Gal4bd-Tax H43-Q

++

11.5

+

8

Gal4bd-Tax H52-Q

-

<1

-

9

Gal4bd-Tax S113-A

++

21.1

+

10

Gal4bd-Tax S132-A

+

7.4

-

11

Gal4bd-Tax S150-A

++

19.5

+

12

Gal4bd-Tax S258-A

++

23.4

+

13

Gal4bd-Tax L296-G

++

27.0

+

14

Gal4bd-Tax L320-G

++

16.6

+

Tax activity in yeast was further defined and compared with that in mammalian cells. Initially, we analyzed nine deletion mutants with individual changes that in toto spanned virtually the entire open reading frame of Tax (Fig. 2 ). These mutants fused to Gal4bd and targeted to the GAL1 UAS were compared with wild-type Gal4bd-Tax (Fig. 2 ). Except for Gal4bd-Tax [Delta](3-6) and Gal4bd-Tax [Delta](337-353), the other seven deletion mutants were inactive. Thus either the activation function of Tax is defined by non-contiguous regions or the protein conformation of Tax is disturbed easily by deletions. To minimize the latter possibility, we re-assessed activity with 13 single amino acid substitution mutants (Table 2 ). Activity of Tax or Tax substitution mutants was assessed by color assays (filter assay and CPRG units columns, Table 2 ) and by His3p growth test (His3p column, Table 2 ). We found that both types of readout correlated well; consistent results were seen for each Tax protein. Thus, the 13 mutants can be grouped into three activity categories: Tax C23-S, Tax S32-A, Tax H43-Q, Tax S113-A, Tax S150-A, Tax S258-A, Tax L296-G and Tax L320-G were active; Tax Q9-G and Tax S132-A were partially active; Tax C29-S, Tax C36-S and Tax H52-Q were wholly inactive.


Figure 2 . Deletion mapping of regions in Tax necessary for activity in yeast. [beta]-Galactosidase activity is expressed as CPRG units.

It was important to verify that the observed differences in activity are not explained trivially by variances in protein expression/stability. Hence, we employed radiolabeled Gal4 binding sequence oligonucleotides to probe by EMSA for the steady-state amount of Gal4bd-Tax proteins. Whole cell extracts were identically prepared from Y187 separately transformed with plasmids expressing each of the Gal4bd-Tax proteins. Under conditions of oligonucleotide excess, the relative amount of Gal4bd-Tax proteins can be compared based on the relative intensities of the protein-bound probe (star, Fig. 3 ). Differences in protein amount due to differential stability/expression would be reflected in changes in band intensity. We found that weakly active (Fig. 3 , lanes 7 and 19) and wholly inactive (Fig. 3 , lanes 10, 13 and 16) Gal4bd-Tax mutants showed band intensities very similar to each other and to active wild-type Gal4bd-Tax (Fig. 3 , lane 3).


Figure 3 . Quantitation of the expression level of Gal4bd-Tax and Gal4bd-Tax mutants in yeast. EMSA was performed using whole cell extracts containing 25 [mu]g protein prepared from Y187 transformed individually with plasmids expressing Gal4bd-Tax (lane 3) or different Tax mutants as indicated (lanes 7, 10, 13, 16 and 19). A 50-fold excess of unlabeled probe (lanes 4, 8, 11, 14, 17 and 20) or 1 [mu]l rabbit anti-Tax serum (lanes 5, 9, 12, 15, 18 and 21) was added to individual reactions. Extract from the parental gal4 -deleted Y187 strain was used as the negative control (lane 2). Lane 1 contains no extract. Lane 6 contains 1 [mu]l rabbit non-specific antibody (ns Ab). + symbols over the lanes indicate addition of either competitive oligonucleotide (50* oligo) or anti-Tax anti-serum. A star indicates a DNA-protein complex. FP designates the position of the free probe.

We performed three additional controls to verify that the shifted complex was indeed composed of Gal4bd-Tax protein and Gal4 binding site probe. First, we observed that unlabeled Gal4 binding site oligonucleotides competed efficiently with labeled probe for protein binding (Fig. 3 , compare lanes 3 and 4, 7 and 8, 10 and 11, etc.). Second, the shifted band was absent if the assay was performed using extract prepared from untransformed Y187 deleted for the endogenous gal4 gene (Fig. 3 , lane 2). Third, the specific protein-DNA complex was abolished if the extracts were preincubated with anti-Tax serum (Fig. 3 , compare lanes 3 and 4, 5 and 6, 7 and 9, 10 and 12, etc.), indicating the presence of Tax in the protein component. Taken together, the EMSA data suggest that the steady-state expression of each Tax mutant in yeast is closely comparable and that activity differences are unlikely to be consequences of differential expression/stability.

Dimerization of Tax contributes to activity

In the process of characterizing transcriptional function, we often find, depending upon expression level, non-linear changes in Tax activity in a manner suggestive of protein oligomerization. Previously, biochemical cross-linking results compatible with Tax homodimers have been reported ( 56 ). Tax activity in yeast affords a powerful genetic system to define dimerization in detail. To delineate this interaction better, assays were performed in which separate plasmids expressing either Gal4bd-Tax or Gal4ad-Tax were used to co-transform yeasts engineered to permit measurement of either a lacZ or a HIS3 response. Because Gal4ad-Tax contains the strong ad activation domain and Gal4bd-Tax contains the specific bd binding domain for the promoter-upstream UAS, the rationale is that if Gal4bd-Tax and Gal4ad-Tax could dimerize via Tax-Tax protein interaction, then the strong ad activation domain would be brought proximal to the promoter. As a positive control, the well-characterized interaction of p53 with SV40 LT ( 53 ) was assayed in parallel (Table 3 , line 20). As negative controls, plasmids Gal4bd and Gal4ad-Tax or Gal4bd-Tax and Gal4ad (Table 3 , lines 21 and 22) were paired in separate co-transformations. CPRG units from transformants were compared with baseline activity from Gal4bd-Tax transformants (Table 3 , line 1). Because both high and low level expression of His3p can result in growth on selective medium (Table 3 , column 6), 30 mM 3AT was added to differentiate high from low activation (Table 3 , column 7).

In the above setting, the reporter activities induced by Gal4bd-Tax and Gal4ad-Tax (Table 3 , line 2) were found to be comparable with those from Gal4bd-p53 and Gal4ad-SV40 LT (Table 3 , line 20). Readouts from both the qualitative His3p test and the CPRG measurement (2726 U for Gal4bd-Tax/Gal4ad-Tax and 3280 U for Gal4bd-p53/Gal4ad-SV40 LT; Table 3 ) were similar for the two pairs. Thus, at this level of assessment, the affinity of Tax-Tax interaction is very similar to that dictating the binding of p53 and SV40 LT ( 52 ). The specificity of Tax-Tax dimerization is supported by findings that Tax interacted with neither Gal4bd alone nor Gal4ad alone (Table 3 , lines 21 and 22).

Table 3 . Self-association of Tax: yeast two-hybrid assay
No

Gal4bd fusion

Gal4ad fusion

lacZ filter assay

lacZ CPRG units

His3p test

His3p test + 30 mM 3AT

1

Gal4bd-Tax

++

16

+

-

2

Gal4bd-Tax

Gal4ad-Tax

++++

2726

+

+

3

Gal4bd-Tax [Delta](3-6)

Gal4ad-Tax

++++

2430

+

+

4

Gal4bd-Tax Q9-G

Gal4ad-Tax

++

10.8

+

-

5

Gal4bd-Tax C23-S

Gal4ad-Tax

++++

1960

+

+

6

Gal4bd-Tax C29-S

Gal4ad-Tax

-

<1

-

-

7

Gal4bd-Tax S32-A

Gal4ad-Tax

++++

1678

+

+

8

Gal4bd-Tax C36-S

Gal4ad-Tax

-

<1

-

-

9

Gal4bd-Tax H52-Q

Gal4ad-Tax

-

<1

-

-

10

Gal4bd-Tax S113-A

Gal4ad-Tax

++++

2320

+

+

11

Gal4bd-Tax S132-A

Gal4ad-Tax

+++

153

+

-

12

Gal4bd-Tax S150-A

Gal4ad-Tax

++++

2822

+

+

13

Gal4bd-Tax S258-A

Gal4ad-Tax

++++

2420

+

+

14

Gal4bd-Tax L296-G

Gal4ad-Tax

++++

2208

+

+

15

Gal4bd-Tax L320-G

Gal4ad-Tax

++++

3128

+

+

16

Gal4bd-Tax [Delta](337-353)

Gal4ad-Tax

++++

1958

+

+

17

Gal4bd-Tax

Gal4ad-Tax [Delta](3-6)

++++

2026

+

+

18

Gal4bd-Tax [Delta](3-6)

Gal4ad-Tax [Delta](3-6)

++++

1980

+

+

19

Gal4bd-Tax C29-S

Gal4ad-Tax C29-S

-

<1

-

-

20

Gal4bd-p53

Gal4ad-SV40 LT

++++

3280

+

+

21

Gal4bd

Gal4ad-Tax

-

<1

-

-

22

Gal4bd-Tax

Gal4ad

++

18

+

-

23

Gal4bd-TBP

Gal4ad-Tax

++

28

+

-

Table 4 . Association of Gal4bd-Tax with Tax
No

Gal4bd fusion

Co-expressor

lacZ filter assay

lacZ CPRG units

His3p test

His3p test + 10 mM 3AT

1

Gal4bd-Tax

None

++

16

+

-

2

Gal4bd-Tax

Tax

+++

152

+

+

3

Gal4bd-Tax [Delta](3-6)

Tax

+++

142

+

+

4

Gal4bd-Tax Q9-G

Tax

+

8.3

-

-

5

Gal4bd-Tax C23-S

Tax

+++

114

+

+

6

Gal4bd-Tax C29-S

Tax

-

<1

-

-

7

Gal4bd-Tax S32-A

Tax

+++

120

+

+

8

Gal4bd-Tax C36-S

Tax

-

<1

-

-

9

Gal4bd-Tax H52-Q

Tax

-

<1

-

-

10

Gal4bd-Tax S113-A

Tax

+++

187

+

+

11

Gal4bd-Tax S132-A

Tax

++

30.4

+

-

12

Gal4bd-Tax S150-A

Tax

+++

158

+

+

13

Gal4bd-Tax S258-A

Tax

+++

190

+

+

14

Gal4bd-Tax L296-G

Tax

+++

214

+

+

15

Gal4bd-Tax L320-G

Tax

+++

117

+

+

16

Gal4bd-Tax [Delta](337-353)

Tax

+++

203

+

+

17

Gal4bd-p53

Tax

-

<1

-

-

18

Gal4bd

Tax

-

<1

-

-

19

Gal4bd-TBP

Tax

++

26

+

-

The genetics of Tax dimerization were further corroborated biochemically by EMSA. For this series of assays, whole cell extracts were prepared separately from yeast Y187 transformed with plasmids expressing Gal4bd-Tax, Gal4bd-Tax + Gal4ad, Gal4bd-Tax + Gal4ad-Tax or Gal4ad-Tax. The extracts were then challenged with an excess of probe. Tax-Tax dimerization was monitored by the ability of one molecule of Tax to supershift a second probe-bound Gal4bd-Tax molecule. We titrated the amount of Gal4bd-Tax such as to favor monomeric Gal4bd-Tax-probe interaction. Indeed, when Gal4ad-Tax was added subsequently to a Gal4bd-Tax protein assembled onto a Gal4 binding site probe (Fig. 4 , lane 4), a supershifted band (open arrow, Fig. 4 , lane 2) with a slower migration in gel was observed. A similar supershifted signal was obtained when the extract was made from yeast that simultaneously co-expressed Gal4bd-Tax and Gal4ad-Tax (Fig. 4 , lane 1). Parallel assays show that proteins which lack the bd domain (i.e. Gal4ad-Tax and Gal4ad alone; Fig. 4 , lanes 5 and 6) do not bind the probe. A further control showed that addition of Gal4ad alone to Gal4bd-Tax produced a single monomeric probe complex (filled arrow, Fig. 4 , lane 3) without a second supershifted band. This is consistent with the interpretation that Tax needs to be present on both DNA-bound and DNA-free moieties for formation of a supershifted protein-protein-DNA complex.

Biochemical and genetic evidence for dimerization prompted us to define a protein domain int Tax specifying homologous association. We genetically analyzed 15 Tax mutants for their ability to bind a Gal4ad-tagged wild-type Tax protein (Gal4ad-Tax, Table 3 ). The approach challenges different versions of UAS-bound Gal4bd-Tax protein for recruitment of the strong ad-containing Gal4ad-Tax wild-type protein to the promoter. Successful formation of a Gal4ad-Tax/Gal4bd-Tax complex at the promoter is reflected in activated expression of the downstream lacZ / His3 cDNA. Thus, we observed that the 15 Tax mutants fell into three groups. Nine mutants, Tax [Delta](3-6), Tax C23-S, Tax S32-A, Tax S113-A, Tax S150-A, Tax S258-A, Tax L296-G, Tax L320-G and Tax [Delta](337-353), bound Gal4ad-Tax well (Table 3 , lines 3, 5, 7, 10 and 12-16). These mutants can self-associate (see for example Table 3 , line 18) and can also bind with another from within the same group (data not shown). Two mutants, Tax Q9-G and Tax S132-A, were partially active and bound Gal4bd-Tax modestly (Table 3 , lines 4 and 11). In contrast, three other mutants, Tax C29-S, Tax C36-S and Tax H52-Q, failed to exhibit any protein binding potential (Table 3 , lines 6, 8 and 9).

Strikingly, the grouping of the mutants into three protein-protein association phenotypes correlated perfectly with their respective phenotypic groupings derived from the one hybrid assay used to define activation profiles [i.e. proteins (not/weakly) competent for homologous association were also (not/weakly) competent for activation; compare Table 3 with Table 2 and Fig. 2 ]. Thus, one interpretation of these results is that self-association is a pre-requisite for transcriptional activity (or vice versa).

One criticism of the above assay is the use of an artificially fused ad domain in measuring activity. Indeed if dimerization is a physiologically important step in the process of Tax trans -activation, then it should be possible to demonstrate, under conditions that favor dimer formation, an increased activity from the activation domain(s) inherent to Tax ( 33 , 57 ). Hence, we repeated the previous assay, however, in this instance we assayed for the activity profile of promoter-bound Gal4bd-Tax when coupled via protein-protein interaction with a non-fused Tax (Table 4 ). The prediction is that without the involvement of the strong ad domain, a Gal4bd-Tax-Tax complex should, nonetheless, have significantly greater activity than Gal4bd-Tax-alone. The experimental findings were indeed consistent with this prediction (Table 4 , compare lines 1 and 2). [beta]-Galactosidase activity from Gal4bd-Tax + Tax co-transformed yeast was 152 relative CPRG units, which was 10 times higher than that from yeast expressing Gal4bd-Tax alone (16 U; Table 4 , line 1) and six to >100 times more than two other sets of controls [Gal4bd alone and Tax (26 U; Table 4 , line 19) and Gal4bd-p53 and Tax (<1 U; Table 4 , line 17)].


Figure 4 . Dimerization of Tax in yeast extracts. EMSA was performed with whole cell extracts containing 20 [mu]g protein from yeast expressing Gal4bd-Tax + Gal4ad-Tax (lane 1), Gal4bd-Tax + Gal4ad (lane 3), Gal4bd-Tax (lane 4), Gal4ad-Tax (lane 5) or Gal4ad (lane 6). An extract containing 20 [mu]g protein from Gal4ad-Tax-expressing yeast was added to the reaction mixture containing Gal4bd-Tax 10 min before loading of samples onto the gel (lane 2). An open arrow indicates a supershifted band, presumptively representing protein-protein-DNA interaction. A filled arrow indicates the band corresponding to protein-DNA interaction. FP designates the position of the free probe. Note the large excess of free probe used to titrate for conditions favoring monomeric interactions in lanes 3 and 4.

The CPRG measurements (Table 4 , column 4) were corroborated by qualitative colorimetric filter assay (Table 4 , column 3) and growth assays in selective medium (Table 4 , columns 5 and 6). We found that less time was needed (1 h) for the yeast co-transformed with Gal4bd-Tax and `non-fused' Tax to develop a blue color than yeast transformed with Gal4bd-Tax alone (Table 4 , compare lines 1 and 2). Similarly, in growth assays on selective medium lacking histidine, yeast co-expressing Gal4bd-Tax and `non-fused' Tax grew in the presence of 10 mM 3AT (Table 4 , line 2), while the control Gal4bd-Tax-expressing yeast failed to grow (Table 4 , line 1). When Gal4bd-Tax mutants were used in this assay with non-fused Tax (Table 4 , lines 4-16), the pattern of activated expression was identical to that observed prviously in Table 2 and 3 . These results strongly support the notion that a more active functional complex is formed from dimerization of Tax molecules.

Functional complementation between two Tax mutants

A corollary to dimerization suggests that two individually defective Tax point mutants could perhaps functionally complement each other. Hence, we searched for evidence of this complementation. Tax Q9-G and Tax S132-A are two mutants that were weakly active in three different assays (Table 2 ). To characterize their biological activity further, we co-expressed Tax, Tax Q9-G or Tax S132-A with homologous or heterologous counterparts fused to Gal4bd. Each was assayed in yeast in four different combinations (e.g. Gal4bd-Tax Q9-G alone, Gal4bd-Tax Q9-G + Tax, Gal4bd-Tax Q9-G + Tax Q9-G and Gal4bd-Tax Q9-G + Tax S132-A and in similar combinations for Tax S132-A; Fig. 5 A). Total amounts of Tax-expressing plasmid were the same in each of the transformations. Consistent with previous findings that there should be a direct contact(s) between two Tax molecules, Gal4bd-Tax + Tax was more active than Gal4bd-Tax alone (Fig. 5 A, lanes 1 and 2). Functional dimerization predicts that, in certain cases, two weakly active mutants would exhibit higher activity together than when each is expressed alone. On the other hand, if Tax were to function as a monomer, then trans -complementation between two mutants would not be observed. In the co-transformations we found that Gal4bd-Tax Q9-G was indeed more active in the presence of Tax S132-A than in the presence of Tax Q9-G (Fig. 5 A, compare lane 5 with 6). When Gal4bd-Tax S132-A was tested, complementary findings were observed (i.e. higher Gal4bd-Tax S132-A activity with Tax Q9-G than with Tax S132-A; Fig. 5 A, compare lane 9 with 10).


Figure 5 . Functional complementation between weakly active Tax Q9-G and Tax S132-A mutants. ( A ) Complementation in yeast. Plasmids expressing the indicated proteins were transformed into yeast and [beta]-galactosidase activity expressed in CPRG units was determined. Total amounts of Tax-expressing plasmid were normalized for each transformation. ( B ) Complementation in HeLa cells. Cells were transfected with the pU3RCAT reporter and the indicated amounts of plasmid(s) expressing Tax or Tax mutants (individually and in combination). Each point on the abscissa represents the summed total amount of Tax-expressing plasmid(s). The gradual sloping of activity with increased amount of DNA represents a carrier effect (unpublished observation). Note that at all points, normalized for total amount of Tax-expressing DNA, TaxQ9-G + TaxS132-A is much more active than the same amount of each mutant expressed individually. ( C ) A representative CAT assay from which the points in (B) were derived. Cells were transfected with pU3RCAT and 1 [mu]g pUC19 (lane 1) or individually with 2 [mu]g IEX (lane 2), 2 [mu]g IEX Q9-G (lane 3), 2 [mu]g IEX S132-A (lane 4) or 1 [mu]g IEX Q9-G + 1 [mu]g IEX S132-A. CAT activities were resolved by thin layer chromatography. AcCM, acetylated chloramphenicol; CM, chloramphenicol. ( D ) Interaction between Tax Q9-G and Tax S132-A in yeast. Experiments with the indicated plasmids were performed as in (A).


Figure 6 . A schematic model of complementation illustrating how dimerization can create a multi-pointed contact surface between Tax and a Tax-responsive factor. Four scenarios are illustrated: (1) a wild-type Tax homodimer [active]; (2) a Tax mutant homodimer [inactive]; (3) a second Tax mutant homodimer [inactive]; (4) a heterodimer between two different (and otherwise individually inactive) Tax mutants [active]. X indicates a point mutation in the protein.The yeast experiment was repeated in mammalian cells. Compared with wild-type Tax in human cells, Tax Q9-G and Tax S132-A were both weakly active for trans -activation of the HTLV-1 LTR (Fig. 5 B and C). When tested in combination in HeLa cells (Fig. 5 B and C), the two mutants (Tax Q9-G and Tax S132-A) indeed showed complementation in activation of the HTLV-1 LTR. Thus, the same Tax dimerization process appears to be shared between yeast and human cells. To verify more clearly that Tax Q9-G and Tax S132-A can make protein-protein contact with each other, the `classic' two hybrid assay as performed in Table 3 was repeated for these two molecules. Figure 5 D shows, as measured by significant increases in [beta]-galactosidase activity, that Gal4bd-Tax Q9-G was indeed more active in the presence (Fig. 5 D, lane 2) than in the absence (Fig. 5 D, lane 1) of Gal4ad-Tax S132-A (and vice versa; Fig. 5 D, lanes 3 and 4).

Our results thus lead us to the hypothesis that for optimal function the activation surface of a Tax-Tax dimer might encode redundancies such that mutation in one monomer is complemented by a different (but not by the same) mutant (Fig. 5 ). A schematic model illustrating molecular aspects compatible with this hypothesis is shown in Figure 6 . The model proposes that the two Tax monomers in a homodimeric complex contact a responsive target through different points.

DISCUSSION

Yeast as a simple model to study Tax function

Several models have been suggested to explain Tax function. These include: (i) indirect tethering of Tax to the promoter via upstream transcription factors such as CREB ( 22 , reviewed in 21 ); (ii) direct contact of Tax with basal transcription factors such as TBP ( 23 ); (iii) induced degradation of inhibitor proteins such as I[kappa]B which results in translocation of NF-[kappa]B into the nucleus ( 20 , 58 ); (iv) stimulation of DNA binding by enhancing dimerization of the bZIP family of transcription factors ( 24 - 26 ); amongst others. The settings in which each of these mechanisms is operative remain to be clarified fully.

The present study used yeast to examine one mechanistic aspect, specifically the mechanism of activation by Tax when it is tethered directly to promoter DNA ( 33 ). We used yeast because many facets of transcription are conserved between yeast and mammals and because yeast cells are simple to manipulate genetically. For example, there are many engineered yeast strains that `knockout' or overexpress certain factors ( 59 , 60 ) and others that have activated or repressed pathways ( 61 , 62 ). Hence, future detailed characterizations of specific factor-factor interactions would be possible once the basic system for Tax is defined.

We found that Tax, when directly targeted to DNA in yeast, capably activated transcription from a minimal promoter which had no binding sites for known accessory factors (i.e. CREB, AP-1, SRF, etc.) (Fig. 1 ). This recapitulates previous findings in human cells of a direct promoter-proximal activity of Tax on a minimal TATA promoter ( 33 ) and establishes the relevance of a yeast model for this aspect of transcription. We did note some slight differences in the activity of a few Tax mutants in yeast and human cells. However, this could stem from the fact that the activation assays in yeast measure only the direct promoter-proximal effect of Tax and do not reflect activities in mammalian cells mediated through other paths (e.g. CREB).

Dimerization as a mechanism that drives Tax function

Perhaps one of the more informative findings from yeast is the suggestion that Tax oligomerization contributes to optimal promoter-proximal activity. Although we do not exclude the participation of higher order structures, Tax-Tax dimer formation offers one simple explanation for the experimental results. Indeed, the idea of dimerization agrees with physical findings from others using Tax-Tax affinity chromatography (Chou-Zen Giam, personal communications). Thus the genetic and biochemical findings here of Tax-Tax dimerization present a parallel with one of the oft proposed functions for Tax, stimulation of bZIP protein dimerization ( 24 - 26 ).

Mechanistically, Tax self-association could guide the dimerization of bZIP and other Tax-interactive proteins ( 28 , 28 , 37 , 63 , 64 ). In this scenario, a Tax monomer would bind a partner monomer (e.g. CREB) and then, through the (as yet not understood) process of self-association, Tax would bring partner molecules into close proximity, thus increasing efficiency of partner dimerization. This would be attractive in settings where Tax expression is high (e.g. HTLV-I-transformed cells) and the level of Tax-associated factor (e.g. CREB) is relatively limiting.

Functional complementation between two partially active Tax mutants

Independent of the role of Tax dimerization on Tax-associated proteins, evidence suggests that this mechanism contributes directly to promoter-proximal Tax activity. This is most clearly illustrated by complementation results in yeast from two weakly active mutants (Figs 5 and 6 ). Although there are other possible explanations, one interpretation of complementation is that Tax and Tax-responsive target interaction is dictated by multiple contacts in which the contact points are distributed asymmetrically on more than one Tax molecule (Fig. 6 ). Therefore, coalescence of more than one Tax molecule presents an optimal activation surface conformation. The proper conformation is dictated by Tax-Tax contact and cannot be substituted by Gal4bd-Gal4bd dimerization ( 18 ). Thus, although the Gal4 DNA binding domain can dimerize ( 18 ), the fact that Galbd-Tax Q9-G/Tax Q9-G (Fig. 5 A, lane 5) or Galbd-Tax S132-A/Tax S132-A (Fig. 5 A, lane 9) are functionally suboptimal supports the idea that it is not di(multi)merization per se but the conformation of the protein complex after di(multi)merization which is important for function (Fig. 6 ). Consistent with this line of thought, a Tax di(multi)mer would physically lead to a larger possible array of distinct patterns on the contact surface than that from a Tax monomer. This could, in part, explain the commonly observed pleiotropic ability of Tax to activate many different promoters that share no apparent cognate similarities (reviewed in 27 ).

ACKNOWLEDGEMENTS

We thank O.J.Semmes, D.Trinh, L.Derr and A.J.Berk for gifts of plasmids and R.F.Chun, M.Benkirane, C.Neuveut, H.Xiao and V.Giordano for critical reading of the manuscript.

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*To whom correspondence should be addressed at Building 4, Room 306, NIH, 9000 Rockville Pike, Bethesda, MD 20892-0460, USA. Tel: +1 301 496 6680; Fax: +1 301 402 0226; Email: kjeang@atlas.niaid.nih.gov
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C.-M. Wong, Y. Zhou, R. W. M. Ng, H.-f. Kung, and D.-Y. Jin
Cooperation of Yeast Peroxiredoxins Tsa1p and Tsa2p in the Cellular Defense against Oxidative and Nitrosative Stress
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Molecular Interactions Involved in the Transactivation of the Human T-Cell Leukemia Virus Type 1 Promoter Mediated by Tax and CREB-2 (ATF-4)
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D.-Y. Jin, V. Giordano, K. V. Kibler, H. Nakano, and K.-T. Jeang
Role of Adapter Function in Oncoprotein-mediated Activation of NF-kappa B. HUMAN T-CELL LEUKEMIA VIRUS TYPE I Tax INTERACTS DIRECTLY WITH Ikappa B KINASE gamma
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