Adjacent GATA and
[kappa]
B-like motifs regulate the expression of a
Drosophila
immune gene
Adjacent GATA and [kappa] B-like motifs regulate the expression of a Drosophila immune gene
Latha
Kadalayil
,
Ulla-Maja
Petersen
and
Ylva
Engström*
Department of Molecular Biology, Arrhenius Laboratories for Natural Sciences,
Stockholm
University, S-106 91,
Sweden
Received November 8, 1996;
Revised and Accepted January 27, 1997
ABSTRACT
The GATA motif is a well known positive
cis
-regulatory element in vertebrates. In this work we report experimental evidence for the direct participation of a GATA motif in the
expression of the
Drosophila
antibacterial peptide gene
Cecropin A1
. Previously we have shown that a
[kappa]
B-like site is necessary for
Cecropin A1
gene expression. Here we present evidence that the
Drosophila
Rel protein which binds to the
[kappa]
B-like site requires an intact GATA site for maximal Dif-mediated transactivation of the
Cecropin
A1
gene. We show that a
Drosophila
blood cell line contains factors binding specifically to the GATA motif of the
Cecropin A1
gene. The GATA binding activity is likely to include member(s) of the GATA family of transcriptional regulators. We show that the promoters of several inducible insect immune genes
possess GATA sites 0-12 base pairs away from
[kappa]
B-like sites in functionally important promoter regions. Clusters of GATA
and
[kappa]
B sites are also observed in the promoters of two important mammalian immune
genes, namely IL6 and IL3. The consistent proximity of GATA and
[kappa]
B sites appears to be a common theme in the immune gene expression of insects
and mammals.
INTRODUCTION
An important component of the insect immune response is the rapid secretion of
antibacterial peptides such as cecropins into the hemolymph (
1
-
3
). Cecropins, which have been isolated from a number of different insect
species, constitute perhaps the most potent family of inducible antibacterial
peptides (
1
,
4
). The
Drosophila Cecropin
(
Cec
) genes (
CecA1, A2, B
and
C
) have been cloned and the main sites of expression are fat body and hemocytes (
5
-
7
). Synthesis of these peptides is regulated at the transcriptional level, possibly via a common regulatory mechanism (reviewed in refs
8
,
9
). It has been shown that a 760 base pair (bp) upstream region of
CecA1
gene contains elements necessary for its inducible and fat body-specific expression (
10
). A stretch of 40 nucleotides within this 760 bp upstream region, conserved
among all four
Cec
genes, contains the well-known [kappa]B motif and two other DNA sequence elements referred to here as
Region 1 (R1) and GATA (Fig.
1
B). The [kappa]B-like site of the
CecA1
promoter functions as an immunoresponsive
cis-
acting element for expression in a
Drosophila
hemocyte cell line (
10
). This [kappa]B-like site is also necessary for activation of
CecA1
expression by the
Drosophila
Rel protein Dif (
Dorsal
-related immunity factor) (
11
,
12
). Similar [kappa]B-like motifs were shown to be necessary for the inducible expression of the
Drosophila diptericin
gene (
13
). Furthermore, [kappa]B-like motifs are present in the promoters of inducible antibacterial factors of
Hyalophora cecropia
(
14
),
Sarcophaga peregrina
(
15
),
Bombyx mori
(
16
) and
Drosophila virilis
(
17
). The R1 sequence element is present in several inducible genes from insects (
9
) but its functional relevance has not yet been investigated.
The vertebrate GATA motif, WGATAR, is a DNA sequence element initially defined
in the promoters of erythroid cell globin genes (
18
,
19
). Analysis of erythroid-expressed genes consistently revealed GATA motifs in functionally important promoter regions (
20
). The GATA motif is now recognized as a positive
cis
-regulatory element in diverse vertebrate and invertebrate genes. Interestingly, similar GATA motifs are present in the promoters of the
Drosophila Cecropin
genes
(Fig.
1
B). Here we demonstrate for the first time the participation of a GATA site in
the expression of an insect immune gene,
Drosophila
CecA1
. We also show that the [kappa]B-specific Dif, which mediates
CecA1
expression, requires not only the [kappa]B-like site but also an intact GATA site for full
trans-
activation.
a
b
c
MATERIALS AND METHODS
Electrophoretic mobility shift assay (EMSA)
Deoxyoligonucleotides were labelled with [[alpha]-
32
P]ATP and the Klenow DNA polymerase. The oligonucleotides used were 5'-d(tcgagacA
GATAA
GGCatgc) GATA-S;
5'-d(gacaaaatgacA
GATAA
GGCatgc) GATA;
5'-d(aacaaaatgacA
CGAG
A
GGCatgc) mut1;
5'-d(aacaaaatgacA
GATAA
G
TG
atgc) mut2.
Capital letters refer to the
Drosophila CecA1
GATA site. Underlined bases in mut1 and mut2 indicate the altered nucleotides
of the GATA site. We refer to the sequence GATAA indicated in bold as the GATA
core sequence.
Nuclear and cytoplasmic extracts were prepared from 10
7
mbn-2 cells according to Grant
et al.
(
35
). The DNA binding reactions and subsequent EMSA on a 5% native polyacrylamide
gel were performed using
32
P-containing deoxyoligonucleotide probes as described in (
10
). The dried gels were scanned using a PhosphorImager (Molecular Dynamics).
Unlabelled oligonucleotides were added to the binding reaction mixture as
competitors before the addition of extracts.
One microgram of Dif expression plasmid was translated
in vitro
using wheat germ extracts for coupled transcription and translation (Promega).
The reaction was carried out in 50 [mu]l according to the manufacturer's specifications. Two microlitres of the
translated Dif protein was used for the EMSA experiment without further
purification.
Recombinant DNA
The construction of the
plasmids pA10, pA15 and pAct-
Dif
was described previously (
10
,
12
). Plasmid pA16 was constructed using site-directed mutagenesis by PCR (
36
). This introduced four base substitutions in the GATA core sequence (GATA -> CGAG). These substitutions were the same as in mut1 shown underlined. The R1 and [kappa]B sites were intact in pA16. The construct pA17 was made by (i) removal of a small fragment containing R1
and [kappa]B-like sites from pA16, by cleaving it with
Bst
EII and
Sph
I; and (ii) religation after filling in the ends with Klenow DNA polymerase.
Both pA16 and pA17 were sequenced to verify the mutations and the integrity of the remaining upstream region.
Cell cultures and transfection experiments
Drosophila
mbn-2 cells (
31
) were grown at 25oC in Schneider's medium as described (
12
). Transfection by calcium phosphate precipitation and measurement of relative [beta]-galactosidase activity ([beta]-gal) were performed according to (
10
), except for the use of the CATELISA kit (Boehringer Mannheim). An immune response was activated by the addition of purified LPS (10 [mu]g/ml) from the
E.coli
strain 055:B5 4 h prior to harvesting.
RESULTS
The GATA site is necessary but not sufficient for
CecA1
expression in a
Drosophila
blood cell line
Dif requires an intact GATA site for maximal transactivation of the
CecA1
gene
Petersen
et al.
(
12
) have shown that the
Drosophila
Rel protein Dif mediates transcriptional activation of the
CecA1
gene in co-transfection assays. Furthermore, Dif-mediated transcriptional activation requires the [kappa]B-like site of the
CecA1
promoter. In view of the proximity of a functionally important GATA site to the
[kappa]B-like site, we asked whether the GATA site is important for Dif
trans-
activation. If so, does Dif bind directly to the GATA site? Firstly, we carried
out co-transfection assays with the constructs shown in Figure
1
A and the Dif expression plasmid pAct-
Dif
. Overexpression of Dif resulted in much higher levels of [beta]-gal activity from the pA10 construct than in the absence of co-transfected Dif [as shown in Fig.
3
A and as reported by Petersen
et al
(
12
)]. The induction of [beta]-gal expression in pA15, which has no [kappa]B-like site, was only 5% of that in pA10 (Fig.
2
A). Interestingly, the reporter construct pA16, in which the core sequence of
the GATA site is mutated, gave considerably lower levels of [beta]-gal expression (30%) than pA10. This suggests that Dif requires not
only the [kappa]B-like site but also the GATA site for its maximal function in
CecA1
expression.
The mbn-2 cells contain a nuclear GATA-binding activity
Nuclear factors interacting with the GATA site were identified by
electrophoretic mobility shift assays (EMSA) of extracts from mbn-2 cells before (control) and after exposure to LPS. Figure
3
shows the presence of a GATA-binding activity (GBA) in nuclear extracts from both control and LPS-stimulated cells (lanes 2 and 4). Cytoplasmic extracts did not
reveal any substantial GBA, neither before nor after LPS-stimulation (lanes 3 and 5). The fastest migrating complex on the gel
(unrelated, Fig.
3
) is due to single-stranded DNA-binding proteins in mbn-2 extracts (data not shown). The GATA-binding activity (GBA) is distinct from the previously
identified [kappa]B-binding activity ([kappa]BA, also referred to as DIF in ref.
10
). Competition experiments confirmed that the [kappa]BA did not bind to the GATA site directly (data not shown).
Non-specific binding of nuclear proteins to the
32
P-labelled GATA probe was ruled out by competition experiments. The
binding experiments were conducted in the presence of excess unlabelled
oligonucleotides containing the GATA, R1 or [kappa]B-like sites. The extracts were added to a solution containing the
labelled probe and the unlabelled competitors. The unlabelled GATA oligonucleotide competed efficiently with the labelled probe (Fig.
4
) and only 10-20% of the binding activity resided at a 50-fold excess of the unlabelled probe. On the other hand, even a 500-fold excess of the R1 and [kappa]B motif-containing oligonucleotides were unable to
displace the
32
P-GATA probe from its complex (data not shown).
EDTA inhibits the formation of the GATA-binding activity
All the known members of the GATA family of transcription factors are Zn finger
proteins which require Zn ions in order to bind to DNA (
20
). To test whether Zn is required for GBA complex formation, the GATA binding
experiment was carried out in the presence of excess amounts of EDTA, which
competes for bound Zn
2+
(
37
). Incubation of the GATA probe with mbn-2 nuclear extracts in the presence of 10 mM EDTA suppressed DNA-protein complex formation to 27% of its former value (Fig.
5
B). On the other hand, 120 mM NaCl had no effect on the complex formation. We
conclude that EDTA has an inhibitory effect on GBA complex formation. This is
probably because GBA is a Zn finger protein(s) and requires Zn
2+
for the formation of stable complexes with DNA.
The GATA motif is present in many insect and two mammalian immune genes
The strong conservation of the GATA motif in the proximal promoters of
Drosophila Cec
genes prompted us to examine its occurrence in the upstream region of other immune genes. Table
1
lists inducible insect immune genes which have the GATAA sequence (the core sequence) in their upstream region. Comparison of this sequence and its flanking bases within each species led to a species-specific consensus for the GATA site. The T/AGATAA sequence is well
conserved between different insect species.
In
Drosophila
and
Sarcophaga
the consensus sequence extends by three nucleotides at the 3' end. Many of the inducible immune genes shown in Table
1
have a GATA site between positions -35 and -65. They also contain [kappa]B-like motifs in their promoter regions (
6
,
7
,
17
,
38
-
42
).
DISCUSSION
The present study addresses the functional relevance of a putative
cis
-acting element, namely the GATA site, in insect immune gene expression.
This site is present in the upstream region of many inducible insect immune genes (Table
1
). We provide experimental evidence for the participation of the GATA site in
Drosophila CecA1
gene expression. Four base substitutions in the GATA core sequence significantly
reduced the function of an otherwise normal
CecA1
promoter (Fig.
1
). We also show that the
Drosophila
hemocyte cell line mbn-2 contains a DNA-binding activity (GBA), specific for the GATA site (Figs
3
and
4
). Future experiments should address the importance of the GATA site for
Cec
gene expression in different tissues like fat body and hemocytes.
LPS induces nuclear [kappa]B-binding activity ([kappa]BA) in
Drosophila
mbn-2 cells (
10
). This is consistent with the fact that Rel proteins are translocated to the
nucleus in response to an external signal, such as LPS, prior to their binding
to [kappa]B sites. In contrast, the nuclear GBA is constitutive and is not
dependent on LPS (Fig.
3
). However, mutations in the GATA core sequence interfered with the LPS-inducibility of
CecA1
gene expression (pA16, Fig.
1
C). Thus, the GATA site is necessary for high levels of LPS-induced
CecA1
expression in transfection experiments. Our observations point towards a
plausible cross-talk between Rel and GATA proteins. Albeit Dif did not bind to the GATA
sequence (Fig.
2
B), Dif
trans
-activation was not efficient when analysed on a
CecA1
promoter construct mutated in the GATA site (Fig.
2
A). This suggests that Dif needs the cooperation of the GBA for full
trans-
activation and LPS response.
What is the nature of the GBA? The binding to the GATA core sequence and the
sensitivity to Zn ions suggest that the GBA is a member of the Zn-finger containing GATA family of transcription factors. There are three known GATA proteins in
Drosophila
, dGATAa (
28
,
29
), dGATAb (previously known as ABF) (
27
) and dGATAc (
30
). The proteins dGATAa and dGATAc are proposed to be involved in determining
dorsal cell fate (
28
,
29
) and in embryonic development (
30
) respectively. The protein dGATAb is involved in the development of the fat
body (
27
). Rehorn
et al.
showed recently that dGATAb is encoded by the
serpent (srp)
locus (
43
). The
srp
gene is expressed both in fat body and hemocytes, and embryos mutant for
srp
lack mature fat body and hemocytes (
43
). Like the
srp
gene, the
Cec
genes are also expressed in the fat body and hemocytes. The overlapping
expression pattern of
srp
and
Cec
genes makes dGATAb protein an interesting candidate for the GATA-binding activity (GBA).
ACKNOWLEDGEMENTS
We thank Drs Dan Hultmark and Malcolm Levitt for critically reading the
manuscript. This work was supported by grants to Y.E. from the Swedish Natural
Science Research Council, The Swedish Cancer Society and Carl Tryggers
Stiftelse.
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