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Nucleic Acids Research Pages 160-162  

Small RNA Database
Acknowledgements
References

Small RNA Database

Small RNA Database

Jian Gu, Yahua Chen, Ram Reddy*

Department of Pharmacology, Baylor College of Medicine, Houston, TX 77030, USA

Received October 3, 1997; Accepted October 6, 1997

ABSTRACT

The small RNA database is a compilation of all the small size RNA sequences available to date, including nuclear, nucleolar, cytoplasmic and mitochondria small RNAs from eukaryotic organisms and small RNAs from prokaryotic cells as well as viruses. Currently, ~600 small RNA sequences are in our database. It also gives the sources of individual RNAs and their GenBank accession numbers. The small RNA database can be accessed through the WWW (World Wide Web). Our WWW URL address is: http://mbcr.bcm.tmc.edu/smallRNA/smallrna.html. The new small RNA sequences published since our last compilation are listed in this paper (Table 1).

Table 1An update containing small RNA sequences published since our last compilation. Sequences from various sources covered in earlier compilations (1-8) are not included in this update
Small RNA Source Accession no. Reference
U1 snRNA Euglena (E.gracilis) U57366 9
  Wheat (T.aestivum) X69328, X69329, X69331, X69332, X69333, X69334 10
U2 snRNA Wheat (T.aestivum) X69326, X69327, X69330 10
U3 snoRNA Euglena (E.gracilis) U27297 11
U6 snRNA Entamoeba (E.histolytica) U43841 12
U14 snoRNA Human (H.sapiens) D88010, D88011, D88012 13
U15 snoRNA Worm (C.elegans) Z75112 14
  Fugu (F.rubripes) X97794 15
U16 snoRNA Frog (X.laevis) Z70298 16
U17 snoRNA Fugu (F.rubripes) X94942 17
U18 snoRNA Worm (C.elegans) Z75111 18
U24 snoRNA Yeast (S.pombe) Z70299 19
  Chicken (G.gallus) Z48762 20
U25 snoRNA Frog (X.laevis) U72853 21
U25B snoRNA Frog (X.laevis) U72854 21
U25C snoRNA Frog (X.laevis) U72855 21
U26 snoRNA Frog (X.laevis) U72856, U72857 21
U27 snoRNA Frog (X.laevis) U72858, U72859 21
U28 snoRNA Frog (X.laevis) U72860, U72861 21
U29 snoRNA Frog (X.laevis) U72862, U72863, U72864, U72865, U72866 21
U30 snoRNA Frog (X.laevis) U72867 21
U31 snoRNA Frog (X.laevis) U72868, U72869 21
U36a snoRNA Human (H.sapiens) X97584 22
  Chicken (G.gallus) X97585 22
U36b snoRNA Chicken (G.gallus) X97588 22
U36c snoRNA Human (H.sapiens) X97587 22
U38a snoRNA Human (H.sapiens) X97582 22
U38b snoRNA Human (H.sapiens) X97583 22

Table 1. Continued
Small RNA Source Accession no. Reference
U39 snoRNA Mouse (M.musculus) X97586 22
U62 snoRNA Human (H.sapiens) U72851 21
U63 snoRNA Human (H.sapiens) U72852 21
U64a snoRNA Mouse (M.musculus) Z83332 23
U64b snoRNA Mouse (M.musculus) Z83331 23
U64 snoRNA Human (H.sapiens) Y11158 24
U65 snoRNA Human (H.sapiens) Y11159 24
U66 snoRNA Human (H.sapiens) Y11160 24
U67 snoRNA Human (H.sapiens) Y11161 24
U68 snoRNA Human (H.sapiens) Y11162 24
U69 snoRNA Human (H.sapiens) Y11163 24
U70 snoRNA Human (H.sapiens) Y11164 24
U71a snoRNA Human (H.sapiens) Y11165 24
U71b snoRNA Human (H.sapiens) Y11166 24
U72 snoRNA Human (H.sapiens) Y11167 24
snr4 snRNA Yeast (S.cerevisiae) U57010 25
snr10 snRNA Yeast (S.cerevisiae) X03372 25
snr42 snRNA Yeast (S.cerevisiae) U56643 25
snr43 snRNA Yeast (S.cerevisiae) U56644 25
snr44 snRNA Yeast (S.cerevisiae) U56645 25
snr45 snRNA Yeast (S.cerevisiae) U56646 25
snr46 snRNA Yeast (S.cerevisiae) U56647 25
E1 snoRNA Chicken (G.gallus) U64695 26
  Oryctolagus (O.cuniculus) U64696 26
  Rat (R.norvegicus) U64697 26
  Mouse (M.musculus) U64698 26
  Zebrafish (D.rerio) U64699 26
E2 snoRNA Frog (X.laevis) U64700 26
  Oryctolagus (O.cuniculus) U64701 26
  Rat (R.norvegicus) U64702 26
  Mouse (M.musculus) U64703 26
E3 snoRNA Oryctolagus (O.cuniculus) U64704 26
  Rat (R.norvegicus) U64705 26
  Mouse (M.musculus) U64706 26
  Chicken (G.gallus) U64707 26
  Frog (X.laevis) U64708 26
snoRNA Cobra (N.atra) Y13837, Y13838 27
  Krait (B.multicinctus) Y13839, Y13840, Y13841, Y13842 27
Y1 scRNA Mouse (M.musculus) U34825 28
  Cat (F.catus) U84675 29
  Bovine (B.taurus) U84676 29
  Dog (C.familiaris) U84677 29
  Guinea Pig (C.porcellus) U84678 29
  Hamster (M.auratus) U84679 29
  Monkey (C.aethiops) U84680 29
  Mouse (M.musculus) U84681 29
  Pig (S.scrofa) U84682 29
  Rat (R.norvegicus) U84683 29

Table 1. Continued
Small RNA Source Accession no. Reference
Y3 scRNA Mouse (M.musculus) U34826 28
  Bovine (B.taurus) U84671 29
  Dog (C.familiaris) U84672 29
  Mouse (M.musculus) U84673 29
  Pig (S.scrofa) U84674 29
Y4 scRNA Bovine (B.taurus) U84668 29
  Dog (C.familiaris) U84669 29
  Monkey (C.aethiops) U84670 29
Y5 scRNA Pig (C.porcellus) U84666 29
  Monkey (C.aethiops) U84667 29
  Galago (G.senegalensis) U94705 30
5.3S scRNA Wheat (T.aestivum) S83272 31
RNase P RNA Eubacteria (Fischerella sp.) X97388 32
  (Anabaena sp.) X97389 32
  (Synechocystis sp.) X97390 32
  (Synechococcus sp.) X97391, X97392, X97393 32
  (Nostoc sp.) X97394, X97395 32
  (Dermocarpa sp.) X97396 32
  (Oscillatoria sp.) X97397 32
  (C.trachomatis) U44031 33
  (C.psittaci) U44032 33
  (C.pneumoniae) U44033 33

ACKNOWLEDGEMENTS

We would like to thank Dr Paula E. Burch for helping to establish our WWW server. This work was supported by NIH grants GM-38320 and GM-52901. Email correspondence should be directed to rreddy@bcm.tmc.edu

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*To whom correspondence should be addressed. Tel: +1 713 798 7906; Fax: +1 713 798 3145; Email: rreddy@bcm.tmc.edu

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