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Nucleic Acids Research Pages 2156-2164  


ZFX transactivation of the HIV-1 LTR is cell specific and depends on core enhancer and TATA box sequences
Introduction
Materials And Methods
   Cells and culture conditions
   Construction of the reporter and expression vectors
   Site-directed mutagenesis
   Gel shift and DMS protection assays
   Transfections and reporter assays
   RNase protection assay
Results
   ZFX575 and ZFX804 transactivate the HIV-1 LTR in several cell lines
   The four C-terminal zinc fingers bind three sites within the ScaI-HindIII fragment of the HIV-1 LTR
   Contribution of the key elements of the HIV-1 LTR core promoter to ZFX transactivation in TM3 and NCTC2544
   Effects of NF[kappa]B, Sp1 and TATA box mutations on ZFX transactivation in CEM and U937 cells
   Transactivation by ZFX575 and ZFX804 in the presence of Tat
Discussion
Acknowledgements
References


ZFX transactivation of the HIV-1 LTR is cell specific and depends on core enhancer and TATA box sequences

ZFX transactivation of the HIV-1 LTR is cell specific and depends on core enhancer and TATA box sequences

Claude Gazin*

INSERM U462, Laboratoire associé du Comité de Paris de la Ligue Nationale Contre le Cancer, Centre Hayem, Institut Universitaire d’Hématologie, Hôpital Saint-Louis, 1 avenue Claude Vellefaux, 75475 Paris cedex 10, France

Received January 21, 1999; Revised and Accepted March 24, 1999

ABSTRACT

The ZFX gene is ubiquitously transcribed and highly conserved among vertebrates. The integrity of Zfx, its murine homologue, has been shown to be important for growth during embryogenesis and sustained gamete production. Alternative splicing was shown to result in production of mRNAs coding for either ZFX804 or a shorter isoform initiated downstream, ZFX575. ZFX575 was previously shown to be a potent transactivator of the HLA-A11 promoter. Here, the HIV-1 LTR is also shown to be potently transactivated by ZFX575 in several cell types, while ZFX804 activity is found to be similar to that of ZFX575, null or intermediary according to the cell type. In all cell types, the HIV-1 TATA box sequence is a key element of transactivation, while the Sp1 or NF[kappa]B sites are variably required, according to the cell type. Overall, the results suggest that ZFX575 and ZFX804 could play a role in HIV-1 LTR induction as co-activators enhancing productive interactions between upstream transactivators and the basal trans-cription complexes recruited by the TATA box.

INTRODUCTION

The ZFX gene at Xp21.3-Xp22.1 was identified as a result of its strong homology to ZFY (1), a gene cloned from a region of the human Y chromosome thought to contain the testis-determining factor (2). Further genetic analysis excluded ZFY as the testis-determining factor (3), which later proved to be SRY, a gene lying in the neighbourhood (4). In mammals, the ZFX gene, which is ubiquitously transcribed, is under stronger conservation pressure than ZFY, whose transcription is detected mainly in testis (5-8). The exon-intron structure of Zfx (9) and the two related murine genes, Zfy-1 and Zfy-2 (10), has been established. Four untranslated exons are followed by seven coding exons, the arrangement of which was found to be quite intriguing. Coding exons 5-9 encode proline-, serine- and acid-rich regions and exon 10 encodes a 45 amino acid stretch comprising a nuclear localisation signal (1,9), whereas the last exon encodes 13 zinc fingers of the C2H2 type. Exons 5-10 end in the first nucleotide of a codon while exons 6-11 all begin with the second nucleotide of a codon (9). As a result, each of exons 6-10 can be spliced out, the resulting mRNAs potentially producing proteins that bear the zinc fingers fused to various N-terminal domains.

Alternative splicing has indeed been documented both for 5[prime]-UTR exons and for coding exons (1,7), the functional consequences of which remain to be elucidated. Alternative splicing of some 5[prime]-UTR exons and of exons 5 and 6, documented in human lymphoblastoid cells, was proposed to result in translation of two isoforms of ZFX, ZFX575 and ZFX804 (1).

The first direct evidence of the organismal importance of Zfx was obtained recently by deriving mutant mice deleted of Zfx exons 7-10 (11); some of the mice’s phenotypic features are reminiscent of those of Turner syndrome, which has been proposed as being caused by ZFX/ZFY haplo-insufficiency (12). These knock-out experiments stressed the importance of ZFX in growth during embryonic development and in efficient gametogenesis during adulthood (11). Furthermore, the phenotype indicates that other members of the gene family, although highly similar to Zfx, cannot compensate for all of its actions.

Since establishment of the primary sequences of their cDNAs, ZFX and ZFY were proposed to encode typical transcription factors with an N-terminal transactivation domain, a nuclear localisation signal and a C-terminal DNA-binding domain (1,2,6). It was later demonstrated that the homologous protein (79% identity) encoded by Zfy-1 displays sequence-specific DNA binding (13). Independently, ZFX was re-isolated through its capacity to bind HLA-A11 sequences critical for promoter activity and ZFX575 was shown to transactivate this promoter in the murine Leydig cell line TM3. The context of the sites responsive to ZFX575 has been previously shown to be a key feature in the observed transactivation (14). In order to examine whether this is a common feature of ZFX transactivation, several promoters of other virus or cell genes were tested in co-transfection studies. The HIV-1 LTR was found to be highly up-regulated and the requirements for ZFX transactivation in terms of promoter structure were examined in TM3 and in NCTC2544, a human epithelial cell line which proved also to be an adequate recipient for ZFX transactivation studies, as well as in two other cell types especially relevant for HIV virus biology: CEM, a human lymphoid CD4+ T cell line, and U937, a monocytic cell line. The relative transactivation efficiencies of ZFX575 and ZFX804 were compared and their cooperation with the viral transactivator Tat evaluated in monocytic and lymphoid cell lines.

MATERIALS AND METHODS

Cells and culture conditions

The TM3 cell line was obtained from ATCC and grown in a 1:1 mix of DMEM containing 4.5 g/l glucose with F12 (Gibco Laboratories), 2.5% FBS. The NCTC2544 cell line (ICN Laboratories) was a gift of Mojgan Djavaheri-Mergny and was grown in DMEM containing 4.5 g/l glucose, 5% FBS. The CEM cell line was obtained from O. Bernard, characterised for the SIL-TAL1 rearrangements (15) and maintained in RPMI 1640, 5% FBS, 1 mM pyruvate. The U937 cell line was obtained from ATCC and grown in RPMI 1640, 5% FBS, 1 mM pyruvate. Care was taken to maintain the cell lines in constant exponential growth.

Construction of the reporter and expression vectors

Expression vectors for ZFX575 and ZFX575[Delta]CT have been described previously (14) ZFX804 was constructed by abutting an EcoRI-KpnI cDNA fragment encompassing the complementary domain of ZFX804, beginning with GAATTCGCC ATG(+3)... and ending with ...(+724)AAA GTG GAT GGT ACC to the 5[prime]-end of the ZFX575 cDNA in which the silent mutation GGC ACT/GGT ACC had been introduced at position 736 [numbering according to (1)]. The resulting cDNA was expressed from the EcoRI site of pSG5 (Stratagene); pSG5-ZFX804[Delta]CT was derived from pSG5-ZFX804 by introducing the stop codon TGA in place of the TGT codon corresponding to amino acid 691; this results in truncation of the protein after zinc finger 9. The pRc[setmn]RSV-Tat construct was obtained from R. Galien. The Pgk-1 promoter SalI-HindIII 550 bp fragment was recovered from a gene targeting vector (16) provided by J. C. Bories and cloned in XhoI and HindIII cut p[beta]gal vector (Clontech). The HIV-1 LTR from the HIV-1-pXP2 construct (17), a gift of O. Schwartz, was excised with KpnI and HindIII and introduced into KpnI and HindIII cut pGL3 (Promega). The ScaI-HindIII fragment of the LTR was introduced into SmaI and HindIII cut pGL3 and small synthetic oligonucleotide fragments were phosphorylated, annealed and introduced into BglII and HindIII cut pGL3. The different mutated LTRs described in Figure 3 were obtained by oligo-nucleotide mutagenesis, as described below.

Site-directed mutagenesis

The protocol was adapted from the Quickchange kit protocol (Stratagene). An aliquot of 100 ng of the plasmid to be modified was mixed with 200 ng of the two self-complementary mutagenic oligonucleotides (which bear the changed sequence flanked by two arms extending each side of the mutation, each having a Tm of ~56°C) together with 250 µM dNTP and 1 U of Pwo DNA polymerase enzyme (Boehringer) in the regular 1× buffer provided by the supplier. The 50 µl mix was overlaid with mineral oil and the reaction cycled for one round at 94°C for 2 min, 48~52°C for 2 min and 72°C for 7 min and 14 rounds at 94°C for 1 min, 48~52°C for 1 min and 72°C for 7 min. The mix was digested with 10 U DpnI (Biolabs) in 100 µl for 1 h, phenol extracted, ethanol precipitated and the pellet dissolved in 20 µl of water. After agarose gel evaluation between 1/10 and 1/2 of the reaction was again digested with 10 U DpnI for 3 h and introduced into chemically competent DH5[alpha] cells. In each case, three different plasmids bearing the desired mutation were functionally evaluated and constructs were checked by sequencing. The sequences of the mutagenic oligonucleotides are available upon request.

Gel shift and DMS protection assays

The reactions were carried out as described previously using GST-4ZFX(14), except that the labelled DNA probes were added last to the reactions. The sequence reactions were done according to Maxam and Gilbert (18).

Transfections and reporter assays

The TM3 and NCT2544 cells were seeded 18 h before transfection in 24-well plates (500 µl/well) in order to reach 40% confluence at the time of transfection. Each well was transfected with a DNA mix consisting of 0.1 µg luciferase construct, 0.1 µg Pgk-1 promoter-[beta]-galactosidase construct and 0.3 µg expression vector in 10 µl 150 mM NaCl mixed with 10 µl of a PEI solution (1.6 mMeq) in 150 mM NaCl according to the supplier (Euromedex). Ten microlitres of the mix was directly introduced into the culture medium. The medium was removed 3 h later and replaced with 1 ml Dulbecco’s medium, 10% SVF. U937 and CEM cells were rinsed three times with serum-free culture medium and resuspended at 12.5 × 106 cells/ml of Dulbecco’s medium without phenol red (Gibco) supplemented with 1.5% DMSO (19), 2 mM phosphoric acid, 2 mM citric acid and 2 mM glutathione-reduced free acid. An aliquot of 400 µl of the cell suspension was mixed with 20 µg of a DNA solution [1 µg/µl; 2 µg luciferase construct, 2 µg Pgk-1 promoter-[beta]-galactosidase construct and 16 µg expression vector(s)]. The ratios of Tat expression construct and control or ZFX-expressing constructs were 1:4 (which corresponds to the ratio resulting in maximal transactivation). The cells were electroporated at 1 mF, 320 V in 0.4 cm wide cuvettes. After electroporation, cells were immediately transferred to 4 ml RPMI 1640, 1 mM pyruvate, 10% SVF medium. Twenty-four hours later, cells were harvested, rinsed twice with PBS and lysed in Reporter Lysis Buffer (Promega); half of the lysate was taken for [beta]-galactosidase measurements using the [beta]-galactosidase Reporter Gene Assay (Boehringer) following the manufacturer’s instructions. Luciferase measurements were done with the Luciferase Assay System (Promega) following the manufacturer’s instructions. The [beta]-galactosidase values were used to normalise the luciferase assays. Values of three independent experiments were aggregated except for CEM experiments in which five series were taken. Means, standard deviations and graphs were generated with Excel 5.

RNase protection assay

The antisense RNA probes were synthesised from T7 promoter-appended PCR fragments generated with the following oligonuleotides and labelled with [32P]UTP (800 Ci/mmol): T7-[beta]-Gal, GGATCCTAATACGACTCACTATAGGGTCAAAGTAAACGATGGTG, and Pgk-1 -90, GGCTCAGAGGCTGGGAAGG (Pgk-1-[beta]-galactosidase); T7-LUC, GGATCCTAATACGACTCACTATAGGAACCAGGGCGCTATCTC, and HIV-1 -50, GTGGCGAGACCCTCAGATCC (HIV-1-luciferase); T7-LUC, GGATCCTAATACGACTCACTATAGGAACCAGGGCGCTATCTC, and pGL3 4800, GTGCAGGTGCCAGAACATTTCTC (42Sp-luciferase). RNA from 10 million CEM cells transfected with the various constructs were recovered 24 h after electroporation with the RNA NOW reagent (Biogentex) according to the supplier’s instructions and treated with RQ1 DNase (Promega) for 30 min at 37°C, the reaction was split into two equal parts processed further according to the instructions of the HybSpeed RPA kit (Ambion) with gel-purified RNA probes corresponding to the luciferase and [beta]-galactosidase constructs, respectively. Radioactive sequencing reactions were run as markers to estimate the size of the bands on denaturing gels and quantification was with a Molecular Imager or a Biospace 1200 (Biospace, Paris).

RESULTS

In order to gain insight into the mechanisms involved in ZFX transactivation, several promoter-reporter constructs were screened in co-transfection studies in the TM3 cell line. While the HIV-1 LTR was found to be markedly transactived (Fig. 1), most promoters, such as the human c-MYC P2 and HLA-G promoters, the murine Pgk-1 promoter and the viral RSV LTR, CMV IE1, HFV LTR and HTLV-1 LTR promoters, as well as the SV40 early promoter/enhancer, did not respond to ZFX575 (not shown).

ZFX575 and ZFX804 transactivate the HIV-1 LTR in several cell lines

ZFX575 and ZFX804 transactivation of the HIV-1 LTR were first compared in TM3. As shown in Figure 1A, ZFX804 was slightly less effective than ZFX575 in TM3 and their respective mutants devoid of the four C-terminal zinc fingers, ZFX575[Delta]CT and ZFX804[Delta]CT, were inactive (Fig. 1A, 3 and 5). Other cell lines have been tested as recipients for transactivation. While HeLa and mature B lymphoblastoid cells were found to be refractive to ZFX transacti-vation (not shown), HIV-1 LTR transactivation was observed in NCTC2544, a human cell line of epithelial origin (Fig. 1A), U937, a promonocytic cell line, and CEM, a T lymphoid CD4+ cell line. ZFX575 was found to be a potent activator of the HIV-1 LTR in the three additional cell lines and ZFX804 (Fig. 1A, 4) was moderately active in CEM and U937 and inactive in NCTC2544 (tagged versions of ZFX804 and ZFX575 were produced in similar relative levels in the various cell lines and ZFX804[Delta]CT as well as ZFX575[Delta]CT were slightly stabilised relative to their wild-type counterpart; not shown). The results shown in Figure 1 suggest that, in these cell lines, the supplementary protein domain present in ZFX804 and encoded by the 3[prime]-end of exons 5 and 6 inhibits the transactivating domain shared with ZFX575 in a cell type-dependent manner. In order to ensure that the transactivation measured through the luciferase activity effectively reflects RNA overproduction, RNase protection assays of the HIV-1 LTR-luciferase and Pgk-1-[beta]-galactosidase RNAs were carried out. CEM cells co-transfected with the corresponding constructs and the control vector or the vector encoding the more potent transactivator ZFX575 were evaluated. Figure 1B indicates that ZFX575 significantly increases (4-fold) the level of HIV-1 LTR RNA initiated at the genuine initiation site. Quantification of transactivations in several experiments by both methods indicated that the two techniques were congruent, although the values obtained by RNase assay were ~5-fold lower (the same holds true for Tat transactivation; not shown). Due to the significant technical advantages of the luciferase activity measurements over RNase protection assays in transient trans-fection experiments, the former technique was used in most of the following experiments. As a first step in the identification of the LTR regions that are important for transactivation by ZFX, the ScaI-HindIII fragment of the HIV-1 LTR was assayed in the same manner as the full-length LTR in TM3, and similar transactivation values were observed with this shorter construct (Fig. 1C; similar transactivation for these two constructs was also observed in other cell lines; not shown). This suggests that the essential elements conferring ZFX responsiveness to the HIV-1 LTR are contained within this region.


Figure 1. Transactivation of the HIV-1 LTR in various cell lines. (A) Full-length wild-type LTR transactivation by the two different isoforms, ZFX575 and ZFX804, and their respective mutants devoid of the four C-terminal zinc fingers. Transactivation values are expressed relative to values obtained with the pSG5 expression vector with no insert: 1, pSG5; 2, pSG5-ZFX575; 3, pSG5-ZFX575[Delta]CT; 4, pSG5-ZFX804; 5, pSG5-ZFX804[Delta]CT. The mean values are indicated and the error bars indicate the standard deviations. (B) Increase in HIV-1 LTR-luciferase RNA levels by pSG5-ZFX575 in CEM evaluated by RNase protection assay. The estimated size of the probe and of the protected bands are indicated on the side; the protected bands correspond to the expected position of the HIV-1 LTR (29); 0 corresponds to assays of RNA extracts from cells transfected with pSG5 without the luciferase and [beta]-galactosidase constructs; N.D. indicates the lane of a reaction undigested by RNase and M.W. indicates the lane of an unrelated reaction sequence used to size the RNA. The protected bands corresponding to RNA from the Pgk-1-[beta]-galactosidase used as an internal control are shown on the right . (C) Transactivation of the -141/+82 ScaI-HindIII fragment of the HIV-1 LTR in TM3 (1-5, as in A).


Figure 2. DMS protection of the ScaI-HindIII fragment of the HIV-1 LTR by the recombinant fusion protein bearing the four C-terminal zinc fingers, GST-4ZFX. The assay was carried out as previously described (14), except that an 8% denaturing gel was used. Regions of interest are shown; the numbering refers to the main initiation point of HIV-1 RNA (29). B indicates the lane corresponding to the DNA fraction bound by GST-4ZFX; F indicates the free unprotected DNA; AC and T correspond to lanes of sequencing reactions by partial chemical cleavage at the corresponding bases according to Maxam and Gilbert (18). The black dots indicate the protected positions and the arrow indicates a hyper-reactive position.

The four C-terminal zinc fingers bind three sites within the ScaI-HindIII fragment of the HIV-1 LTR

When transactivation was observed, it depended on the four C-terminal zinc fingers in all cell lines. The DNA-binding activity of ZFX to elements of the MHC class I promoter has previously been shown to map to that C-terminal region (14) and the core sequences of the previously identified recognition sites were in accordance with those found for the full-length Zfy-1 protein (13), as well as with those predicted from the amino acid sequence of the three C-terminal zinc fingers. DNA-binding sites of ZFX were therefore sought in the relevant region of the HIV-1 LTR. The DNA-binding sites of GST-4ZFX, a recombinant fusion protein bearing the four C-terminal zinc fingers of ZFX (14), were mapped by DMS protection in the 223 bp ScaI-HindIII fragment. Three sites at which DMS accessibility was markedly changed upon GST-4ZFX binding were detected along this fragment and are shown in Figure 2. The upstream binding site at -70 overlaps the two upstream Sp1 binding sites; its core sequence, GTGGCCT, is close to the sites identified in the HLA-A11 promoter and to the preferred binding sites of Zfy-1 (13). The site centred around -40, GCCCTCAGA, and the site around position +5, GTCTCTCTGG, differed markedly from the consensus and their affinity for GST-4ZFX was at least an order of magnitude lower than consensus sites (not shown). Nevertheless, all three sites were mutagenised in the context of the ScaI-HindIII promoter fragment. The downstream site was deleted whereas the contacted bases were changed in the two upper sites (Fig. 3A). The three mutations combined on the same promoter fragment resulted in a loss of DNA binding evidenced in a band shift assay (Fig. 4A) and slightly elevated basal expression level (2-fold; not shown), indicating that the changes, surprisingly, did not compromise promoter activity. Moreover, transactivation of the mutated promoter by ZFX575 or ZFX804 in TM3 (and in the other cell lines; not shown) was not significantly impaired and was found to be similar to transactivation of the wild-type promoter (Fig. 4B). In both cases, the last four zinc fingers were found necessary. This suggests that the last four zinc fingers, while being involved in vitro in sequence-specific DNA binding, may be necessary for transactivation because of involvement in interactions with cell components other than the specifically recognised DNA sequences identified here.


Figure 3. (A) Sequences of the -141/+82 ScaI-HindIII fragment of the wild-type HIV-1 LTR construct and the mutated variants used in this study. TATA box, Sp1 and NF[kappa]B motifs are indicated in bold. The three Sp1 sites are in italic bold letters and GST-4ZFX recognition sites are italicised and underlined. The continuous lines correspond to regions of identity whereas discontinuous lines indicate deletions. The wild-type bases bordering the deleted regions and around the replaced TATA boxes are indicated for clarity. The sequence of the mutated -141/+82 ScaI-HindIII fragment of the HIV-1 LTR (SHm3) devoid of the three specific DNA-binding sites identified by DMS protection assay (Fig. 2) corresponds to the upper line. (B) Oligonucleotide sequences corresponding to the various minimal promoters cloned between BglII and HindIII sites of the pGL3 luciferase reporter. Nucleotides instrumental in the cloning are indicated in lower case letters.


Figure 4. (A) Binding of the recombinant fusion protein bearing the four C-terminal zinc fingers, GST-4ZFX, to the mutated (SHm3) and wild-type (SHwt) ScaI-HindIII fragment of the HIV-1 LTR. The assay was carried out as previously described (14), with gel-purified and kinased DNA fragments excised from the respective luciferase reporter constructs. Lane 1, no recombinant protein added; lanes 2-5, GST-4ZFX; lane 3, 2000-fold excess of the SHwt fragment; lane 4, 2000-fold excess of the SHm3 fragment; lane 5, 2000-fold excess of the -282/-224 ZFX-binding site of the HLA-A11 promoter. F indicates the positions of the free probes and B1-B3 indicate the positions of the protein-DNA complexes of increasing molecular ratios: 1:1, 2:1 and 3:1, respectively. (B) Transactivation of the mutated -141/+82 ScaI-HindIII fragment of the HIV-1 LTR (SHm3) by: 1, pSG5; 2, pSG5-ZFX575; 3, pSG5-ZFX575[Delta]CT; 4, pSG5-ZFX804; 5, pSG5-ZFX804[Delta]CT (transactivation results should be compared to those obtained for the corresponding wild-type construct; Fig. 1B).

Contribution of the key elements of the HIV-1 LTR core promoter to ZFX transactivation in TM3 and NCTC2544

Besides the crucial TAR element lying downstream from the core promoter, three elements of the HIV LTR promoter have been recognised to be of overwhelming importance for transcriptional regulation, namely the duplicated NF[kappa]B sites, the three Sp1 sites and the TATA box (20-26). Deletion of the NF[kappa]B sites within the context of the whole LTR had only limited impact on transactivation in TM3 (Fig. 5A) and NCTC2544 (Fig. 5B) cells. Conversely, deletion of the Sp1 binding sites abolished transactivation by ZFX (Fig. 5). Therefore, Sp1 binding sites are necessary in TM3 and NCTC2544 for ZFX transactivation of the HIV-1 LTR. In order to determine whether the Sp1 sites together with the TATA box would suffice for ZFX transactivation, minimal promoters were constructed (Fig. 3B). A 52 bp promoter (52wt), spanning nucleotide sequences -68 to -16 of the HIV-1 LTR and consisting mainly of two Sp1 sites and the TATA box, was transactivated with the same magnitude as the full-length LTR whereas its basal activity was slightly higher (6020 RLU/10 000 cells compared to 2236 RLU/10 000 cells for the LTR-driven luciferase activity in TM3). A 42 bp promoter (42wt), spanning sequences -58 to -16, was 3-fold less active and transactivation by ZFX575 was 3-fold lower. It was previously pointed out that the Sp1 site proximal to the TATA box is of lower affinity than the two upper sites (27). Therefore, this site was changed for an optimised Sp1 binding site (27) in the context of the 42 bp promoter (42Sp). As shown in Figure 5, this change restored a near maximal transactivation. Further shortening the construct (32wt) led to a severe loss of basal activity (582 RLU/ 10 000 cells in TM3) and no transactivation was observed; mutation of either the Sp1 site (42Spm) or the TATA box (42SpTm) resulted in similar impairment of the promoter.


Figure 5. Transactivation of the various mutated LTR and minimal promoters by ZFX575 in TM3 and NCTC2544. (A) Transactivation in TM3. (B) Transactivation in NCTC2544. The shaded bars correspond to co-transfections with pSG5 and open bars to co-transfections with pSG5-ZFX575.

Next, mutations of the TATA box were tested in the context of the whole LTR. Deletion of the TATA box increased basal activity of the LTR (~20-fold; not shown) both in TM3 and NCTC2544. On the other hand, transactivation by ZFX575 of the resulting construct, LTR[Delta]TATA, was severely impaired. This suggests that, under the present experimental conditions and in these cell lines, the TATA box region has paradoxical effects as an organiser of repression of the basal transcription level and as a sequence allowing stimulation of transcription. Furthermore, the initiator element (28) seems to be used efficiently only in the absence of the TATA box. Replacing the HIV TATA box with the SV40 TATA box had a similar impact on basal transcription level and transactivation by ZFX575 of the resulting construct, LTRTATA-SV, was only moderately affected (Fig. 5). Exchanging the HIV TATA box for the HLA-A11 TATA box also stimulated the basal transcription level to a similar extent, but transactivation by ZFX575 of the resulting construct, LTRTATA-A11, was only marginal and comparable to that of LTR[Delta]TATA. Therefore, transactivation by ZFX575 in TM3 and NCTC2544 required specific TATA box sequences in addition to at least one Sp1 site (all mutations had an impact on ZFX804 transcriptional stimulation in TM3 that was similar to their impact on ZFX575 effects; not shown). Consequences of NF[kappa]B, Sp1 and TATA box mutations on ZFX transactivation were further evaluated in CEM and U937 cells, T lymphoid and promonocytic cell lines used as lines representative of the cell lineages primarily targeted by HIV in vivo.

Effects of NF[kappa]B, Sp1 and TATA box mutations on ZFX transactivation in CEM and U937 cells

The effects of various modifications were examined in U937 cells. Deletion or replacement of the HIV-1 TATA box abolished transactivation by ZFX as observed in the other cell lines (Fig. 6A). Deletion of the Sp1 sites from the LTR had a milder effect and 42Sp (nor 52wt; not shown) was not activated in U937 (Fig. 6A), although its basal expression level was significant. The basal activity of the LTR deleted of its NF[kappa]B sites was reduced 5-fold in U937 (not shown) and no transactivation by ZFX was observed (Fig. 6A). Thus, transactivation of the HIV-1 LTR in U937 depends both on the integrity of the TATA box and on the presence of NF[kappa]B sites. In CEM, transactivation by ZFX was nearly abolished when the TATA box was deleted from the LTR or replaced by the HLA-A11 TATA box (Fig. 6B); these alterations resulted in a moderate elevation of basal transcription (not shown). Deletion of the Sp1 or NF[kappa]B sites did not result in abrogation of ZFX transactivation and transactivation of the LTR[Delta]Sp1 construct was similar to that of LTR[Delta]NF[kappa]B, although significantly lower than that of the wild-type LTR. The 42Sp minimal promoter construct was transactivated 8-fold in CEM and, in short constructs, alteration of the Sp1 sites or of the TATA box abolished transactivation (Fig. 6B), as observed in TM3 and NCTC2544. This suggests that while a Sp1 site was absolutely required in the short construct, it was not in the whole LTR and that, in this latter context, it can be relayed by another site(s). A control RNase protection assay was carried out to verify that ZFX augmentation of luciferase activity driven by the 42Sp construct was paralleled by an increase in the corresponding RNA; Figure 6C shows that this is indeed the case and radioactivity quantifi-cation indicated a 5-fold increase (a decrease of 1.5- to 2-fold in [beta]-galactosidase RNA was repeatedly observed in these experiments, while [beta]-galactosidase activity was statistically constant; the significance of this discrepancy is not clear). Overall, the results shown in Figure 6 indicate that in CEM, transactivation by ZFX575 required the TATA box and several classes of upstream binding sites allowed transactivation.


Figure 6. Transactivation of various mutated LTR and minimal promoters by ZFX575 in cell lines of haematopoietic origin. (A) Transactivation in U937. Shaded bars correspond to the basal level obtained with pSG5 and set to 1; open bars indicate transactivation by pSG5-ZFX575. (B) Transactivation in CEM. (C) RNase protection assay. The numbers on the side indicate the estimated size of the probe and of the protected bands. Other indications are similar to Figure 1B. The lower lanes display the protected bands corresponding to RNA from the Pgk-1-[beta]-galactosidase construct used as an internal control.

Transactivation by ZFX575 and ZFX804 in the presence of Tat

Since Tat is a key element in HIV transcriptional regulation, transactivation by ZFX was examined in its presence. As shown in Figure 6, transactivation of the wild-type HIV-1 LTR exerted by ZFX575 was to some extent additive to that exerted by Tat. The additional effect of ZFX575 resulted in a 3-fold increase in transactivation, both in CEM (Fig. 7A) and in U937 (Fig. 7B). ZFX804 had a milder additive effect (2-fold increase) in CEM and had a barely detectable effect in the presence of Tat in U937. The LTR[Delta]NF[kappa]B construct, which was shown to be unresponsive to ZFX575, was re-examined in U937 for Tat transactivation, either alone or in the presence of ZFX575 or ZFX804. As shown in Figure 7C, deletion of the NF[kappa]B sites had a profound effect on Tat transactivation in U937 and Tat transactivated this construct only 5-fold. Quite unexpectedly, ZFX575 stimulated transcription of LTR[Delta]NF[kappa]B 12-fold over the level obtained with Tat alone and ZFX804 6-fold over Tat transactivation. Although the mechanisms involved are not clear at present, this experiment demonstrated that Tat does not lower the ZFX transactivation potential per se (and reversibly), even when they are presumably tethered to the same transcriptional complexes. Similarly, Tat did not extensively decrease ZFX transactivation of the SHm3 constructs devoid of TAR (Fig. 7D), although in all Tat and ZFX co-transfections ZFX protein levels were diminished by a factor of three to four (not shown), suggesting that in these co-transfection experiments the production level of ZFX proteins still reached the level necessary to have maximal effects on transcription.


Figure 7. Transactivation by ZFX in the presence of Tat. Transactivation of the (A) wild-type LTR in CEM, (B) wild-type LTR in U937, (C) LTR[Delta]NF[kappa]B in U937 and (D) mutated truncated promoter SHm3 devoid of TAR in U937 by: 1, pSG 5; 2, pRcTat + pSG5; 3, pRc Tat + pSG5-ZFX575; 4, pRcTat + pSG5-ZFX804.

DISCUSSION

It has previously been shown that ZFX575 activates transcription through specific binding sites of the HLA-A11 promoter (14). These early studies indicated that the precise context of the promoter exerted important effects on the transactivation process, although the mechanisms involved remained elusive. In the hope of gaining insights into such contextual effects and in order to determine whether they are characteristic of ZFX transactivation, screening for new promoters transactivated by ZFX was undertaken. Among many promoters examined, the HIV-1 LTR was transactivated with the largest magnitude. Furthermore, this promoter is one of the most intensively studied in a variety of cell types (reviewed in 29) and was therefore expected to provide an excellent substrate for further analysing the mechanisms of ZFX transactivation. The HIV LTR was not only transactivated in the TM3 murine Leydig cell line, which was previously found to be a useful recipient for ZFX transactivation studies (14), but also in a variety of human cell lines, such as NCTC2544 (an epithelial cell line), CEM (a T lymphoid CD4+ cell line) and U937 (a promonocytic cell line).

The present report conveys three main points pertaining to the activity of ZFX and to regulation of the HIV-1 LTR: (i) trans-activation of a promoter by ZFX does not necessarily correlate with the presence of strong specific binding sites recognised by the last four zinc fingers; (ii) the HIV-1 LTR is transactived by ZFX in various cell types, including CD4+ T lymphocytic and monocytic cell lines targeted by the virus; (iii) ZFX575 and ZFX804 have distinct regulatory properties that vary with the cell type.

The ZFX DNA-binding site identified at position -70 of the LTR, which is similar to the sites involved in HLA-A11 promoter transactivation by ZFX575 (14) and to Zfy-1-binding sites identified by PCR-SELEX (13), as well as the other variant sites at positions -40 and +7, were found to be unnecessary for ZFX transactivation. However, in all the cell lines tested, the last four C-terminal zinc fingers previously involved in specific DNA binding (14) were found to be critical for ZFX transactivation. Systematic mutagenesis of the 13 zinc fingers indicated that individual impairment of only three of them abolished trans-activation of the HLA-A11 and HIV-1 promoters; these three zinc fingers are located in the C-terminal end of ZFX, shown here to be required for transactivation (C.Gazin, unpublished data). Taken together, these observations suggest that the four C-terminal zinc fingers of ZFX are critical for transactivation of the HIV-1 LTR, because of interaction with cell components other than the specific DNA-binding sites identified in the LTR. Whereas ZFX-binding sites were not required for HIV-1 LTR transactivation, specific TATA box sequences were necessary in all the cell types tested. This was demonstrated either by replacement of the native sequences by the SV40 or HLA-A11 TATA boxes or by deletion of the TATA box, which created a situation in which, most probably, all the transcription complexes were recruited by the initiator of the HIV-1 LTR (28). This suggests that ZFX was able to activate complexes recruited by specific TATA box sequences in all the cell lines providing that either Sp1 or NF[kappa]B were allowed to co-operate. It should be noted that in its native context, the HLA-A11 TATA box permits ZFX transactivation through an upstream region (-205/-273) of that promoter, suggesting that the mechanisms of transcriptional integration involve different, context-dependent elements for the HLA-A11 and HIV-1 promoters. Similarly, transactivation by Tat has been shown to require specific TATA box sequences in the context of the HIV-1 LTR (19-26).

Deletions of the Sp1 or NF[kappa]B sites of the LTR had different effects in the various cell types tested. Sp1 sites were found to be necessary and sufficient, along with the native TATA box, in NCTC2544 and TM3, sufficient but not necessary in CEM and insufficient and unnecessary in U937. On the other hand, the NF[kappa]B sites were unnecessary in NCTC2544, TM3 and CEM, but necessary in U937. Remarkably, transactivation by Tat was also severely impaired by deletion of these sites in U937 (Fig. 7C), but not in other cell lines (not shown). No evidence was found for direct ZFX binding to these sites or to some of the proteins known to bind to them (data not shown). Therefore, the cell-specific ability of ZFX to boost the effect of transcription factors bound at the NF[kappa]B or Sp1 sites and to specific TATA sequences could be explained by an indirect mechanism.

The TATA box, NF[kappa]B and Sp1 sites and their spacing have been shown to be important for TAR-dependent transactivation exerted by Tat (19-26). In the cell lines used here, impairment of ZFX transactivation by mutation of these sites was paralleled by impairment of Tat transactivation. Whether reliance on the same promoter sites for ZFX and Tat transactivation means that ZFX acts in a way somehow similar to Tat remains to be shown. It has been proposed that Tat mainly acts by increasing elongation of transcription complexes through nucleation of a Tat-TAK/TEFb/cyclinT-CDK9 kinase complex believed to be appropriately positioned by interactions with TAR and promoter-bound factors and eventually resulting in efficient phosphorylation of the RNA pol II CTD (30-33) which renders it processive (34). On the other hand, significant effects of Tat on transcription initiation have been reported (35 and references therein) and Tat has been shown recently to recruit p300 and CBP transcriptional integrators (36-38), which may facilitate both initiation and elongation by facilitation of nucleosome displacement through chromatin protein acetylation. As the p300 and CBP co-activators are also involved in the integration of the transcriptional effects of Sp1 (39) and NF[kappa]B (40) in other promoters, it will be worth testing whether these co-activators modulate ZFX transactivation. However, the requirements for ZFX transactivation are more important than those for Tat transactivation. ZFX transactivation can be observed in some cell lines only; furthermore, the relative efficiencies of ZFX575 and ZFX804 display important differences among cell lines in which ZFX transactivation was observed. The permissive or refractory status of several tested cell lines, including those used in the present study, for ZFX575 and/or ZFX804 transactivation could not be correlated to their endogenous expression status for any ZFX isoforms as assessed by semi-quantitative RT-PCR (not shown). In some permissive cell lines, ZFX804 was roughly equipotent to ZFX575 (e.g. in TM3) and completely inactive in others (e.g. in NCTC2544), while the situation was intermediate in CEM and U937. Preliminary studies with ZFX804 deletion variants, including some that deleted most of the ZFX575 transactivation domain, indicated that the N-terminal domain of ZFX804 would essentially act as a negative effector of transcription (C.Gazin, unpublished data). The upstream domain specific to ZFX804 could recruit negative effectors present or missing in different cell types while the domain shared by both isoforms would be essentially competent or not, depending on the cell type, to cooperate with positive effectors of transcription.

ZFX/ZFY are candidate genes for Turner syndrome (11,12), a condition which primarily affects gonad maturation and causes subtle alterations in various tissues resulting in an increase in morbidity (12). It has also long been known to include an immunological component and monocytic and T lymphoid cells of Turner syndrome patients have been shown to be affected ex vivo in various aspects of their physiology (41); the responsible gene(s) is therefore expected to usually be active and required in these cell types, among others. However, a definitive proof of ZFX/ZFY involvement in Turner syndrome is still missing. Whatever the case, experimental involvement of ZFX as a co-activator in HIV-1 LTR transactivation opens the possibility of its relevance in HIV virus biology, especially in reactivating the latent provirus. In this respect and in order to better understand the mechanisms of ZFX action, two major points will need to be addressed in the future. First, to define the elusive co-effectors of ZFX and, second, to decipher whether ZFX575 and ZFX804 synthesis, post-translational modification and activity are under the control of specific signalling pathways.

ACKNOWLEDGEMENTS

I thank Professor F. Sigaux (INSERM U462) for his constant interest in this work and for critically reading the manuscript, Professor L. Degos for encouragement in the early times of this work and Professor F. Morinet for helpful discussions. I thank also J. Boisse, R. Nancel and B. Boursin for photographic work, B. Papp and F. Ferchal for providing various cell lines and discussions, A. Saïb for providing reporter constructs, for useful comments and for critically reading the manuscript andM. H. Stern, P. Paul, O. Schwartz, R. Galien and J. C. Bories for providing various constructs. This work was supported by grant 4041 from the Association pour la Recherche contre le Cancer, by the Ligue Nationale Contre le Cancer and by INSERM.

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*Tel: +33 1 53 72 22 19; Fax: +33 1 53 72 22 17; Email: c.gazin@jupiter.chu-stlouis.fr


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