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Gramene: a resource for comparative grass genomics
Doreen Ware, Pankaj Jaiswal, Junjian Ni, Xiaokang Pan, Kuan Chang, Kenneth Clark, Leonid Teytelman, Steve Schmidt, Wei Zhao, Samuel Cartinhour, Susan McCouch and Lincoln Stein

Supplementary Material

Table 1. Biological data object, number of objects in the database and example URL links in Gramene.

Biological Data object

No.

Example URL link

Maps

    

Rice genetic maps

12

http://www.gramene.org/gramene/searches/browser?query=&class=Map_Study&RGN=on

Genetic map of other species

4

http://www.gramene.org/gramene/generic/pic?name=3MW99;class=Map;map_start=0;map_stop=154.3

QTL study

22

http://www.gramene.org/gramene/misc/qtl_study?name=QTL-Blast-Greenhouse-CO39%2FMoroberekan&class=QTL_study

Markers

    

RFLP

3266

http://www.gramene.org/gramene/map/marker?name=R2147&class=Marker

SSRs

500

http://www.gramene.org/microsat/

AFLP

470

http://www.gramene.org/gramene/map/locus?name=E26M49.180-P2-9RK98&class=Locus

QTLs traits

353

http://www.gramene.org/gramene/misc/qtl?name=qrDLA-11-1&class=QTL

Homeologies

77

http://www.gramene.org/gramene/misc/homoeology?name=R1-M3-2&class=Homoeology

References

5400

http://www.gramene.org/gramene/info/reference?name=McCouch-S-1998-1983&class=Reference

BAC sequenes

1290

http://www.gramene.org/perl/contigview?clone=AC078840

Gene predictions

7381

http://www.gramene.org/perl/contigview?clone=AC078840

Repeat features

7086

http://www.gramene.org/perl/contigview?clone=AC078840

Genetic marker alignments

1091

http://www.gramene.org/perl/contigview?clone=AC078840

BAC end alignments

7343

http://www.gramene.org/perl/contigview?clone=AC093017




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