Nucleic Acids Research, 2002, Vol. 30, No. 4 839-865
© 2002 Oxford University Press
Survey and Summary |
Natural and pharmacological regulation of telomerase
Laboratoire de Biophysique, Muséum National d’Histoire Naturelle, INSERM U 201, CNRS UMR 8646, 43 rue Cuvier, F-75005 Paris, France, 1Unité MéDIAN, CNRS FRE 2141, UFR de Pharmacie, Université de Reims Champagne-Ardenne, 51 rue Cognacq-Jay, F-51096 Reims Cedex, France, 2Aventis-Pharma SA, Centre de Recherche de Vitry-Alfortville, Quai Jules Guesde, F-94805 Vitry/Seine, France, 3Laboratoire de Chimie des Interactions Moléculaires, Collège de France, CNRS UPR 285, 11 place Marcelin Berthelot, F-75005 Paris, France and 4Laboratoire de Biologie Moléculaire et Cellulaire, CNRS UMR 5665, Ecole Normale Supérieure de Lyon, 46 allée d’Italie, F-69364 Lyon, France
Received October 9, 2001; Revised and Accepted November 29, 2001.
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ABSTRACT |
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 TOP ABSTRACT INTRODUCTIONTELOMERASE REGULATIONINHIBITING TELOMERASESHORTCOMINGSCONCLUSIONREFERENCES |
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The extremities of eukaryotic chromosomes are called telomeres. They have a structure unlike the bulk of the chromosome, which allows the cell DNA repair machinery to distinguish them from ‘broken’ DNA ends. But these specialised structures present a problem when it comes to replicating the DNA. Indeed, telomeric DNA progressively erodes with each round of cell division in cells that do not express telomerase, a specialised reverse transcriptase necessary to fully duplicate the telomeric DNA. Telomerase is expressed in tumour cells but not in most somatic cells and thus telomeres and telomerase may be proposed as attractive targets for the discovery of new anticancer agents.
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INTRODUCTION |
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TOPABSTRACTINTRODUCTIONTELOMERASE REGULATIONINHIBITING TELOMERASESHORTCOMINGSCONCLUSIONREFERENCES |
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The telomere is a DNA–protein structure found at the ends of all eukaryotic linear chromosomes. It is involved in several essential functions: (i) telomere DNA-associated proteins help to prevent telomere DNA from being recognised as DNA breaks and allow cells to distinguish between a normal end and the result of a double-strand DNA break, i.e. telomeres ‘cap’ chromosomal ends; (ii) it provides a means of complete replication of the chromosome, since many mammalian cells that are without telomerase lose telomeric DNA at each division; (iii) it contributes to the spatial and functional organisation of chromosomes within the nucleus; (iv) it participates in transcriptome regulation.
The replication and capping functions of telomeres are essential to maintain the integrity of the genome and must be present in all eukaryotic organisms. These two points, in connection with the regulation and manipulation of telomerase in normal and cancerous human cells, will be discussed in detail in this paper. The two other characteristics may be considered as acquired functions, which may play a fundamental role in the physiology of some organisms, but could, at least in theory, be supported by other nuclear or chromosomal components.
Human telomeric DNA consists of a few kilobases of a short repetitive motif which is double-stranded, except for a 3'-terminal G-rich overhang (1–3) (Table 1). Telomere maintenance is necessary for long-term cell proliferation. In the absence of a specific replication machinery at the telomere ends it was predicted (4), and later demonstrated (5), that gradual sequence loss due to incomplete replication of the lagging strand would eventually lead to critically short telomeres and trimming of essential chromosomal sequences. The mechanism whereby cells count divisions uses the gradual erosion of telomeres, which ultimately triggers replicative senescence in many cell types. In order to compensate for this loss, different mechanisms for the addition of new telomere sequences have evolved. In humans, telomere maintenance is mainly performed by a specific reverse transcriptase, telomerase, which was initially identified in ciliates (6,7). Human telomerase is a ribonucleoprotein (8) composed of a catalytic subunit, hTERT (9–11), and a 451 nt long RNA (hTR; also known as hTER or hTERC) (12), which acts as a template for the addition of a short repetitive motif d(GGGTTA)n on the 3'-end of a primer.
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Telomerase is active in the germline, as well as some stem cells, but is inactive in most somatic cells. It is assumed, but not firmly demonstrated, that the original length of the telomeres of these cells will be sufficient to act as a proper buffer against excessive loss during cell division: the initial telomere length is probably sufficient for a normal lifetime. Telomeres are indeed shorter in fibroblasts from an old donor compared to fibroblasts from a young donor (13). Interestingly, telomerase is reactivated in a large majority of cancer cells (for a review see 14). Furthermore, recent key experiments demonstrated that: (i) telomerase is sufficient for immortalisation of many cell types (15) and sufficient to allow transformed cells to escape from crisis (16), however, telomerase alone does not induce changes associated with a transformed phenotype (17,18); (ii) inhibition of telomerase limits the growth of human cancer cells (19); (iii) ectopic expression of the telomerase catalytic subunit (hTERT; also known as hEST2 or hTRT) in combination with several oncogenes (the simian virus 40 large T and small t oncoproteins and an oncogenic allele of H-ras) results in direct tumourigenic conversion of normal human epithelial and fibroblast cells (20,21). All these results point to a key role of telomerase in the tumourigenic process. In a recent review, unlimited proliferative potential, which depends on telomere maintenance, was defined as one of the six hallmarks of cancer (22). Mutations leading to reactivation or up-regulation of the enzyme may represent a required event in the multistep development of many cancers, such as colorectal carcinomas (23). In some cases (notably neuroblastomas, gastric and breast tumours), higher levels of telomerase activity are associated with poor prognosis, showing that telomerase could be used as a predictive marker. Results obtained with mice lacking a functional telomerase enzyme and in successive generations of mice doubly inactivated for telomerase and INK4a clearly show that telomere dysfunction impairs tumour development (24,25).
Understanding telomere/telomerase regulation is expected to give major insights into the tumourigenesis process and its manipulation becomes a challenge for the design of future anti-oncogenic approaches. In this review we will first present the mechanisms that regulate telomerase activity in human cells, before presenting the different strategies that have been proposed in order to inhibit telomerase in cancer cells.
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TELOMERASE REGULATION |
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TOPABSTRACTINTRODUCTIONTELOMERASE REGULATIONINHIBITING TELOMERASESHORTCOMINGSCONCLUSIONREFERENCES |
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Telomerase activity is absent in many normal human somatic cells. Repression of telomerase activity during somatic development in other mammals, like rodents, is not as tightly regulated as in humans. Interestingly, animals that grow indeterminately, such as lobsters (26) and rainbow trout, appear to express telomerase ubiquitously.
Telomerase activity is growth regulated in certain human tissues and is the target of many cellular programmes. For instance, telomerase activity is enhanced in activated lymphocytes (27–29) and in endometrial tissue during the menstrual cycle (30). In contrast, terminal maturation or differentiation of cells has been correlated with repression of telomerase activity (31–34), but these two events might be uncoupled in some cases (35). A number of extra- or intracellular signals modulate telomerase, such as UV radiation (36), calcium (37), zinc (38), interferon 
(39), oestrogen (40,41) and cytokine (42).
In vitro reconstitution of human telomerase is possible in cell extracts with two partners: the template RNA component hTR and the catalytic protein subunit hTERT (43,44). The following sections will discuss the regulation of these two essential components before presenting other factors that influence telomerase activity in living cells, with special emphasis on the human case (Fig. 1).
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hTERT
Normal human diploid cells transiently expressing hTERT acquire telomerase activity, demonstrating that hTERT is the limiting component necessary for restoration of telomerase activity in these cells (45,46). hTERT is a relatively large protein (127 kDa), with a net basic charge (pI 11.3) and reverse transcriptase motifs in its C-terminal part.
Gene amplification. The hTERT gene is present in the human genome as a single copy sequence on chromosome 5p15.33 (47). It encompasses >37 kb and consists of 16 exons (48,49). It is actually the most distal gene on chromosome 5p. One may speculate that this proximity to the telomere influences its transcription thanks to telomeric position effects, recently described for human telomeres (50; C.Koering, A.Pollice, M.P.Zibella, L.Sabatier, C.Brun, S.Bauwens, J.Pulitzer and E.Gilson, submitted for publication).
This localisation at the tip of 5p can also explain the amplification of hTERT observed in 31% of tumour cell lines and 30% of primary tumours (47,51). This suggests that increasing the copy number of hTERT may well be a way to up-regulate telomerase levels in tumour cells.
Transcription regulation. A large number of studies have been performed on regulation of the hTERT promoter. In agreement with a key role of telomerase in cell programming, this promoter is the target for a large number of signalling pathways and integrates multiple levels of gene regulation. However, the mechanisms involved in differential hTERT transcription in normal and tumour cells are still not understood. In normal cells hTERT expression appears to be repressed: the number of hTERT mRNA molecules per cell is below the sensitivity of quantitative RT–PCR (<0.004 molecules/cell), as compared to 0.2–6 molecules of spliced hTERT RNA molecules per telomerase-positive cell (52). Up-regulation could be a consequence of epigenetic changes in the hTERT gene.
A complex network of transcription factors. A variety of transcription factors have been shown to participate in hTERT gene expression (53). They include Myc, Sp1, the estrogen receptor (40), E2F-1 (54), WT-1 (55), NF-
B (56) and MZF-2 (57). Among them, Myc has been studied in the greatest detail.
Myc induces telomerase by increasing the expression level of hTERT (58). hTERT expression correlates with myc overexpression in human prostate cancer (59) and cervical cancer (60). Although c-Myc is a direct mediator of telomerase activation (61,62), a recent report indicates that c-Myc-mediated regulation of telomerase activity is disabled in immortalised cells (63). Myc-induced activation of the hTERT promoter requires an evolutionarily conserved E-box, which is a preferred target for Myc/Max heterodimers (50,64). Overexpression of c-Myc results in a significant increase in transcriptional activity of the core promoter (65). c-Myc genes are frequently deregulated in human tumours and myc overexpression may cause telomerase reactivation. However, TERT is unable to substitute for c-Myc in the transformation of primary rodent fibroblasts, suggesting that the transforming activities of c-Myc extend beyond its ability to activate TERT gene expression and hence telomerase activity (62). Both exogenous and endogenous ceramides modulate hTERT promoter activity via a rapid proteolysis of the ubiquitin-conjugated c-Myc transcription factor (66). It has also been reported that arsenic inhibits transcription of the hTERT gene and that this effect is mediated at least in part by decreased c-Myc and Sp1 transcription factor activities (67).
Myc and Mad1 proteins have an antagonistic effect on hTERT transcription (68). The E-boxes at the hTERT proximal promoter are occupied in vivo by c-Myc in exponentially proliferating HL60 cells. In contrast, Mad1 protein is induced and bound to the hTERT promoter in differentiated HL60 cells. These data suggest that reciprocal E-box occupancy by Myc/Max and Mad/Max is responsible for activation and repression of the hTERT gene (69). Mad is induced by 12-O-tetradecanoylphorbol-13-acetate treatment, which represses hTERT promoter-driven reporter gene activity (70).
Spl cooperates with c-Myc to activate transcription of hTERT (64). The 3'-region of the hTERT promoter contains a GC-box, which binds Sp1 and is essential for transactivation. Overexpression of Sp1 leads to significant activation of transcription in a cell type-specific manner. Western blot analysis using various cell lines reveals a positive correlation between c-Myc and Sp1 expression and transcriptional activity of hTERT (64). Interestingly, an interaction with p53 could eliminate the binding of Sp1, resulting in hTERT repression (71,72).
Epigenetic modifications. Inhibition of histone deacetylases (HDAC) by trichostatin A (TSA) in telomerase-negative cells results in activation of telomerase activity and up-regulation of hTERT mRNA (69,73,74). This TSA sensitivity can be explained by the recruitment of HDAC by the Myc/Mad heterodimer (75). Indeed, TSA alleviates TERT repression by Mad (73). Interestingly, a hTERT promoter devoid of E-boxes still exhibits TSA sensitivity (73), raising the possibility that factors other than Myc/Mad are able to recruit HDAC. A likely candidate is Sp1 (73,74), which would suggest a dual role for this factor in the regulation of hTERT transcription, both as an activator and as a repressor.
Analysis of the DNA sequence surrounding the putative transcriptional start region reveals a TATA-less, CAAT-less, GC-rich promoter located in a CpG island (65,76). Demethylation of DNA with 5-azacytidine in two cell lines induces expression of hTERT, suggesting that DNA methylation can contribute to hTERT repression in some cells. However, the TERT CpG island is unmethylated in some telomerase-negative primary tissues and non-immortalised cultured cells, indicating that mechanisms independent of DNA methylation can prevent hTERT expression (77).
Alternative splicing. There is a likely role of post-transcriptional factors in the control of enzyme function (78). Multiple products of hTERT mRNA have been identified by RT–PCR. At least six splice variants of hTERT have been shown, including a ‘deletion’ variant (hTERT) that is missing conserved residues from the catalytic core of the protein. hTERT inhibits endogenous telomerase activity, which results in telomere shortening and senescence (79,80). Only tissues expressing hTERT containing complete reverse transcriptase motifs demonstrate telomerase activity (81). Most telomerase-positive cell lines only contain a few molecules of potentially functional hTERT mRNA (389). Various tumour cell lines and tissues show considerable differences in their splicing patterns (10,82). These results suggest a possible role for hTERT splice variants in the regulation of telomerase.
Assembly. Various purification protocols reveal that the telomerase enzyme exists as a large complex that acts as a dimer or a multimer (83,84). Two separate, catalytically inactive TERT proteins can complement each other in trans to reconstitute catalytic activity (71). This complementation requires the N-terminus of one hTERT and the reverse transcriptase and C-terminal domains of the second hTERT. Moreover, the telomerase RNA templates in the active enzyme are interdependent and function cooperatively with each other (84). These data suggest that the catalytic core of human telomerase may exist as a functionally cooperative dimer in vivo, in a manner similar to other reverse transcriptases.
Remarkably, assembly of the holoenzyme appears to be regulated by hsp90-related chaperones (85). It is noteworthy that the concentration of these proteins is markedly elevated during transformation, as well as in advanced prostate carcinomas. Addition of purified chaperone components enhances reconstitution of telomerase activity in cell extracts, which suggests a novel mechanism for increasing telomerase assembly via hsp90 chaperoning (85). The hsp90 yeast homolog (Hsc82) also affects telomere length (86). In humans, both hsp90 and p23 bind specifically to the hTERT protein and influence its proper assembly with the template RNA, hTR. Hsp90 is distinguished from other chaperones in that most of its known substrates are signal transduction proteins (for a review see 87). The hsp70 chaperone also associates with hTERT in the absence of hTR and dissociates when telomerase is folded into its active state, which is similar to what occurs with other chaperone targets. In contrast, hsp90 and p23 remain associated with functional telomerase complexes, which differs from other hsp90-folded enzymes that require only transient hsp90/p23 binding (88).
Cellular localisation. The enhanced telomerase activity in human T lymphocytes is associated with cellular relocalisation of the enzyme from the cytoplasm to the nucleus and does not require increased expression of hTERT (89). Thus, the mechanism of telomerase activation in these cells appears different from that in tumour cells. One candidate to regulate telomerase trafficking is the 14-3-3 signal protein, which has also been identified as a hTERT-binding partner (90). A dominant negative 14-3-3 redistributes the nuclear form of hTERT into the cytoplasm. 14-3-3 probably enhances nuclear localisation of hTERT by inhibiting CRM1/exportin-mediated nuclear export of hTERT (90). Down-regulation of 14-3-3 
prevents clonal evolution and leads to immortalisation of primary human keratinocytes (91).
Phosphorylation. The hTERT subunit of telomerase appears to be a phosphoprotein whose activity is modulated by a complex set of protein kinases, providing additional connections between telomerase activity and signal transduction pathways.
Protein kinase C (PKC) is a serine/threonine kinase involved in signal transduction pathways that govern a wide range of physiological processes, including differentiation, proliferation and gene expression. PKC appears to enhance telomerase activity through phosphorylation of hTERT (92,93). PKC
is believed to be the PKC isotype that functions in vivo in NPC cells (94). The PKC inhibitor bis-indolylmaleimide I inhibits telomerase activity in cultured nasopharyngeal cancer cells (92) and during T cell activation (45). In an inverse fashion, protein phosphatase 2A (PP2A) inhibits telomerase activity (95). Therefore, it is possible that PKC and PP2A are involved in the reciprocal control of telomerase activity, which is consistent with the notion that a balance between PKC and PP2A plays an important part in tumourigenesis.
Besides PKC, protein kinase B (PKB or Akt) is also involved in up-regulating telomerase activity (96). Treatment of human melanoma cells with the protein phosphatase inhibitor okadaic acid stimulates both hTERT peptide phosphorylation and telomerase activity, whereas treatment of the cells with the PI3 kinase inhibitor Wortmannin inhibits phosphorylation and telomerase activity. These observations suggest that the serine residue at position 824 of hTERT may be phosphorylated by Akt in human cancer cells and that this phosphorylation is involved in mediating cellular signalling produced by growth factor activation of the PI3 kinase pathway (96). Telomerase may thus be one of the molecular targets of Akt in the processes of apoptosis, cell survival and proliferation during ageing and tumourigenesis.
Finally, it has been reported that c-Abl tyrosine kinase, activated by DNA damage, associates and phosphorylates hTERT, leading to telomerase inhibition (97). Furthermore, mouse cells deficient in c-Abl show telomere lengthening. These findings suggest a direct link between DNA damage signalling and telomeres in human cells, consistent with previous studies in yeast showing that telomeres are modified in response to DNA double-strand breaks (98,99).
Other factors modulating catalytic activity. In vitro both the catalytic activity and processivity of human telomerase are modulated by temperature, substrate (dNTP and primer) concentration and potassium concentration (100). A close correlation was found between telomerase processivity and telomere length in vivo, suggesting that enzyme processivity is a key factor in telomere regulation (101). Unfortunately, little is known concerning the factors that modulate this processivity in the cell. Telomerase activity isotonically extracted from human leukemia CEM line nuclei shows low processivity, while 500 g nuclear extracts or CHAPS extracts are highly processive, suggesting that the association of telomerase with nuclear chromatin affects telomerase activity (102).
hTR
Several names have been proposed for the RNA component of human telomerase; we have chosen to use ‘hTR’ throughout the text. A mutation in hTR has recently been demonstrated to be involved in dyskeratosis congenita (DKC), a progressive bone marrow failure syndrome that is characterised by abnormal skin pigmentation, leukoplakia and nail dystrophy (103), and a mutation of another telomerase component is involved in the X-linked form of the disease (see hTR-binding proteins below; 104). DKC cells have a lower level of telomerase RNA, produce lower levels of telomerase activity and have shorter telomeres than matched normal cells (105).
Expression and maturation. In contrast to hTERT, hTR is not a rate limiting factor for telomerase (12). hTR is sometimes considered as a basal, housekeeping RNA with more or less constant expression levels. This assumption does not completely reflect reality and the human telomerase RNA component (hTR) is present in normal somatic cells at lower levels than in cancer-derived cell lines. The hTR gene is present in the human genome as a single copy sequence on chromosome 3q26. In humans and yeast, the RNA subunit is transcribed by RNA polymerase II, in contrast with ciliates, where RNA polymerase III is responsible for this RNA synthesis. The mature form of hTR has a 5'-trimethylguanosine cap, a hallmark of small nuclear ribonucleoprotein (snoRNP) particles involved in RNA splicing (106). The half-life of hTR in telomerase-negative cells is 
5 days and is increased 1.6-fold in the presence of hTERT (107). The transcription rate of hTR is greatly increased in cells expressing endogenous hTERT and an increased steady-state hTR level also appears to be due to the increased half-life (107). The 4-week half-life of hTR in H1299 tumour cells is the longest half-life yet reported for any RNA.
Like hTERT, the hTR gene contains CpG islands (108). The elements responsible for promoter activity are contained in a 231 bp region upstream of the transcriptional start site. The hTR promoter is methylated in some ALT cell lines and this is associated with a total absence of hTR expression in these lines (109). However, there is no evidence for hTR promoter methylation in normal somatic tissues.
hTR-binding proteins. The 2–3-fold increase in size of mammalian telomerase RNAs relative to ciliate telomerase RNAs is due to the presence of a 3' domain resembling a box H/ACA small nucleolar RNA (snoRNA) (110). The human telomerase RNA (hTR) H/ACA motif is dispensible for in vitro assemby of telomerase. However, this H/ACA domain is essential in vivo for hTR accumulation, hTR 3'-end processing and telomerase activity. A small percentage of hTR is associated with nucleoli (110). Remarkably, all four common proteins associated with H/ACA snoRNAs (hGAR1, NAP57/dyskerin, hNOP10 and hNHP2) also bind to hTR. Among these proteins, dyskerin is a nucleolar protein involved in pseudo-uridylation of specific residues of rRNA. Mutations in the gene encoding dyskerin lead to the X-linked form of the human disease DKC (104). The pathology of DKC is consistent with compromised telomerase function. Antibodies that specifically recognise the human GAR1 (hGAR1) protein can immunoprecipitate H/ACA snoRNAs and hTR from HeLa cell extracts, which demonstrates that hGAR1 is a component of H/ACA snoRNPs and telomerase in vivo (111). Cells from individuals with the rare inherited disorder DKC, which is due to mutations in the dyskerin gene, have reduced levels of telomerase and shortened telomeres, which might provide the first direct genetic test of the function of telomeres in humans (104). hNOP10 and hNHP2 specifically associate with H/ACA RNAs, including hTR (112). The accumulation in yeast of the mature RNA component of human telomerase depends on its association with three of the four core H/ACA snoRNP proteins and it is likely that this is also the case in human cells (113).
Besides the H/ACA-binding proteins, heterogeneous nuclear ribonucleoproteins (hnRNPs) C1 and C2 associate with the RNA component of human telomerase (114) and binding of hnRNPs C1 and C2 to telomerase correlates with the ability of telomerase to access the telomere. La, hStau and L22 also interact with hTR (115–117). These hTR-associated proteins may play a role in hTR processing, telomerase assembly or localisation in vivo.
Dimerisation and association with hTERT. There is evidence that yeast telomerase contains more than one active site per telomerase complex. At least two functionally interacting RNA molecules are present and both act as templates for DNA polymerisation (118). Functional human telomerase also contains two hTR molecules (and at least two hTERT subunits; 83). These two RNA templates are interdependent and functionally cooperate with each other (84,119). This suggests that one telomerase complex is able to couple the elongation of both chromatid ends in a single round of replication.
The RNA template which is located at the 5'-end of the hTR RNA is stably associated with the catalytic subunit, making telomerase a very peculiar reverse transcriptase. The protein and RNA domains responsible for this rather tight association (although no association constant may be found in the literature) have been mapped (120–122). It is not yet clear whether telomerase activity can be normally modulated by a variable association level of its essential components.
The telomere itself regulates telomerase activity
In several organisms, the telomere length of telomerase-positive cells is maintained at a constant mean value. This can be viewed as a balance between elongation and shortening (123,124). In budding yeast, this balance is determined by negative regulation of telomerase activity by the telomere itself when its length exceeds a threshold value (125–127). This negative feedback appears to be mediated by a complex set of telomeric proteins acting in cis on telomerase activity both at the G-tail and at the duplex part of telomeric DNA. Whether these two pathways of cis-acting regulation of telomerase activity are coordinated or have separate outcomes is certainly an exciting question for future investigations.
Telomerase cis-regulation by the G-tail. The active telomerase holoenzyme is not free to elongate chromosome ends because its activity requires specific G-tail functions. Therefore, it is not surprising that the conformation of this distal part of the telomere is subject to a complex set of controls.
DNA structure. G-tails can form non-canonical DNA structures such as G-quadruplexes (128–131) that are known to inhibit telomerase activity (132). The presence of telomeric antiparallel quadruplexes has recently been demonstrated in the macronucleus of a ciliate, Stylonychia lemnae (133). The intramolecular telomeric G-quadruplex is fairly stable under physiological conditions (134) and may be recognised by nuclear proteins. Other polypeptides, such as hnRNP D, destabilise intrastrand G-G pairing and disrupt these structures (135). It is also interesting to mention that the cytosine-rich complementary telomeric strand may also form an unusual structure, called i-DNA (136,137), although no data currently support its formation in vivo.
Telomerase activation and recruitment. In budding yeast, Cdc13 specifically binds a G-tail in vitro (138,139) and telomeres in vivo (140). Therefore, Cdc13 appears to be a G-tail protein in vivo. One role of Cdc13 is to activate the telomerase holoenzyme or to recruit it to chromosome ends (141–144). It is likely that the contact between Cdc13 and telomerase is transient and, presumably, restricted to the period of the cell cycle where telomerase is active (145,146).
Cdc13 has no obvious orthologues in species other than budding yeast. Nevertheless, it is highly likely that other types of telomeric DNA-binding proteins carry out the functions of Cdc13 in other than Saccharomyces species. A possible Cdc13 functional homologue is hnRNP A1, a single-stranded DNA-binding factor that modulates telomere replication in mammalian cells (147). Interestingly, the human protein Pot1 (148) shares amino acid sequence homologies with the ciliate end-binding proteins (149). Deletion of the fission yeast pot1+ gene has an immediate effect on chromosome stability, causing rapid loss of telomeric DNA (148). Whether Pot1, hnRNP A1 or other proteins are involved in the activation of telomerase at human chromosome ends remains to be determined.
Cdc13 is not the only nucleic acid-binding protein known to stimulate a reverse transcriptase. Indeed, the nucleocapsid protein (NCp7) of human immunodeficiency virus type 1 covers the genomic RNA and is able to stimulate reverse transcription (150). NCp7 interacts both with RNA and DNA and with the reverse transcriptase subunits, suggesting that NCp7 plays a role in recruitment and/or activation of the enzyme during viral DNA synthesis (150). Both NCp7 and the ciliate end-binding proteins have nucleic acid protection and annealing properties (151,152), raising the question of whether similar nucleic acid chaperoning activities are involved in Cdc13 functions. In any case, the parallels between the roles of Cdc13, NCp7 and the ciliate end-binding proteins have to be added to the growing list of resemblances existing between retrotransposition and telomere maintenance (153,154).
Other proteins are also involved in correct processing of the G-tail for telomerase. In contrast to Cdc13, these proteins are well conserved from yeast to human and play additional roles in recombinational repair. Among them, Ku is a heterodimeric protein involved in non-homologous DNA end joining. Yeast Ku mutants are defective in telomere structure: the 3'-overhang that is normally present only during the S phase of the cell cycle in yeast remains present throughout the cycle (155). yKu is bound to telomeric DNA and plays a direct role in telomeric silencing (156). Mammalian Ku86 also plays a fundamental role at the telomere by preventing telomeric fusions (157). All these results illustrate the pivotal role of Ku proteins, which bind to telomeric DNA as well as to the telomeric RNA template and essential proteins.
Mutations in the yeast gene Tel1, the closest homologue of the human ataxia telangiectasia mutated gene, result in shortened telomeres (158) and human ataxia telangiectasia fibroblasts also have a reduced telomere length (159). Tel1 appears to act through the Rad50–Mre11–Xrs2/Nbs1 complex, probably by controlling the activity of this complex at telomeres. In yeast, Tel1 is partially redundant, with Mec1 coding for a DNA damage response kinase. Mec1 also plays a role in telomere maintenance and a Tel1/Mec1 double mutant undergoes senescence.
Telomerase inhibition. Cdc13 has antagonistic roles in telomere maintenance. Loss-of-function mutations in either Stn1 or Ten1, two Cdc13-interacting factors, produce dramatic lengthening of telomeres in a telomerase-dependent manner (160,161). Stn1 does not, however, appear to be involved in the telomerase activation functions of Cdc13 (162). Altogether, Cdc13, Stn1 and Ten1 appear to form a complex within the cell that inhibits telomerase. Since Cdc13 also positively regulates telomerase (see above), it is thought that Cdc13 exists in two configurations having opposite effects on telomerase activity. The balance between the telomerase-positive and the telomerase-negative forms of Cdc13 is expected to play an important role in telomere length regulation.
Coupling between telomerase and C-strand synthesis. C-strand synthesis occurs concomitantly with, or shortly after, G-strand elongation by telomerase and is believed to be carried out by the lagging strand replication machinery (163). In budding yeast, mutations in DNA polymerase (cdc17/pol1) that cause no obvious defect in general replication can perturb telomere replication and lead to telomere lengthening and accumulation of single-stranded DNA at telomeric regions (145,164–166). In the ciliate Euplotes, partial inhibition of C-strand synthesis by aphidicolin leads to over-elongation of the G-strand by telomerase (167). These findings have two important implications. First, a telomere-specific mechanism for lagging strand synthesis is coupled with chromosome end structure replication. Secondly, lagging strand synthesis inhibits telomere elongation.
Several mechanisms may account for the increase in G-tail length upon inhibition of C-strand synthesis. A failure to fully replicate the C-strand is expected to increase the length of the single-stranded DNA in the corresponding G-strand. Consequently, longer G-tails may bind additional Cdc13 proteins (168), which may favour telomerase recruitment and/or activation. These processes are expected to create a positive feedback loop of G-tail elongation. A more direct inhibitory effect of the C-strand replication machinery on telomerase can also be imagined. Finally, G-tail elongation may be amplified in a replication-defective context by unmasking a nuclease activity, as suggested by the alteration in chromatin structure and the rapid increase in single-stranded DNA at telomeres upon DNA polymerase inactivation (166).
The telomeric phenotypes of DNA polymerase mutant strains are very similar to those exhibited by strains bearing telomere-elongating alleles of CDC13 and STN1 (143,144,160,164). This raises the interesting possibility that CDC13 and STN1 are required for C-strand synthesis. A strong argument in favour of this model is the interaction between Cdc13 and DNA polymerase , as revealed by two-hybrid analysis and by co-immunoprecipitation in vivo (164). Moreover, point mutations in either CDC13 or CDC17/POL1 that reduce this interaction result in telomere lengthening (164). Therefore, Cdc13, presumably assisted by Stn1, may load the DNA polymerase –primase complex to initiate C-strand synthesis at chromosome ends. This proposed role of the Cdc13–Stn1 complex in the initiation of C-strand synthesis provides a simple explanation for the negative effect of this complex on telomerase activity, since lagging strand synthesis is believed to inhibit telomerase (see above).
Cdc13, Stn1 and Ten1 play additional roles in capping: their mutation leads to G2 growth arrest and an over-elongated G-tail. Taking into account the other role of Stn1 in telomere replication, one can propose that Stn1 both regulates G-tail length and ensures chromosome end stability by controlling C-strand synthesis.
The proteins binding to the duplex part of telomeric DNA repress telomere elongation in cis. The budding yeast protein Rap1p, which binds along the double-stranded telomeric DNA repeats, enacts an additional level of regulation. An excess of Rap1p molecules bound to the telomere causes repression of telomerase activity in cis (126,169–171). This creates a negative feedback loop that contributes to the setting of telomere length. Two factors interacting with Rap1p, Rif1p and Rif2p are also involved in this regulation (172). Several lines of evidence indicate that the mechanism where proteins binding to the double-stranded parts of telomeres limit telomere elongation might also apply to organisms other than budding yeast. In fission yeast, a deletion of taz1+, a gene encoding a telomeric DNA-binding protein, dramatically increases telomere length (173).
In human cells, the known telomeric DNA-binding proteins are the TTAGGG repeat factors 1 and 2 (TRF1 and TRF2) (174–177). The C-terminal sequences of TRF1 and TRF2, called teloboxes, specifically recognise a telomeric DNA fragment but require an N-terminal dimerisation domain to firmly bind DNA (175,178,179). Reminiscent of the properties of yeast Rap1p protein, an excess of TRF1 and TRF2 inhibits telomere elongation (180,181). Moreover, their targeting to a single telomere leads to telomere shortening, indicating that they act in cis to repress telomere elongation (K.Ancelin, M.Brunon, S.Bauwens, C.Koering, C.Brun, M.Ricoul, J.P.Pommier, L.Sabatier and E.Gilson, submitted for publication).
Inhibition of telomerase activity by an antisense telomerase oligonucleotide did not further increase the pace of telomere erosion caused by TRF1 targeting, suggesting that telomerase itself is the target of TRF1 regulation (K.Ancelin, M.Brunon, S.Bauwens, C.Koering, C.Brun, M.Ricoul, J.P.Pommier, L.Sabatier and E.Gilson, submitted for publication). We do not know at present whether this inhibitory effect is mediated by TRF1 itself or by associated proteins. The latter hypothesis should be seriously considered in the light of the capacity of TRF1-interacting factor TIN2 to inhibit telomerase-mediated telomere elongation (182). In any case, this effect of TRF1 is reminiscent of the cis inhibition of yeast telomerase by Rap1 (170,171). In contrast, TRF2 targeting and telomerase inhibition have additive effects (K.Ancelin, M.Brunon, S.Bauwens, C.Koering, C.Brun, M.Ricoul, J.P.Pommier, L.Sabatier and E.Gilson, submitted for publication). This raises the interesting possibility that TRF2 could control telomere length independently of telomerase. For instance, TRF2 might activate nucleases at telomeres. The expression of a trans-negative form of TRF2 is associated with a significantly decreased amount of detected G-rich single-stranded telomeric DNA, which is likely to reflect either a trimmed or a masked G-tail (183). Therefore, TRF2 may be directly involved in the processing of chromosomal DNA ends, for example by targeting the RAD50–MRE11 complex, which is known to exhibit nuclease activity (184), to telomeres (185). These studies predict that TRF2 could still contribute to telomere length regulation in telomerase-negative cells. The mechanisms which control the rate of telomere shortening in human cells are still unknown (186) and, interestingly enough, appear to be developmentally regulated (187). Modulations of TRF2 dosage and expression might be part of this regulation. Strikingly, the human orthologue of Rap1 does not bind DNA but is targeted to telomeres via its interaction with TRF2 (188). The TRF2–hRap1 complex might be another means to limit telomere proliferation, perhaps by repressing telomerase activity in cis, like yeast Rap1 protein.
Tankyrase (189,190), a telomeric poly(ADP-ribose) polymerase (PARP), was identified through its interaction with TRF1. Tankyrase-mediated ADP ribosylation inhibits binding of TRF1 to telomeric repeats in vitro and acts as a positive regulator of telomere elongation in vivo, apparently by inhibiting TRF1 (190). Long-term overexpression of tankyrase in telomerase-positive human cells results in a gradual and progressive elongation of telomeres. A second tankyrase gene product (Tank2, with 85% homology to Tank1) was recently found to interact with TRF1 (191,390). Overexpression of Tank2 causes rapid cell death. In contrast, the initial observation that PARP1 plays a major role in telomere regulation (192) was recently challenged by another study (193).
PinX1 is a nuclear protein that interacts with Pin2/TRF1 and hTERT. It inhibits telomerase and affects tumourigenicity. Overexpression of PinX1 leads to delayed growth arrest, expression of senescence markers and telomere shortening (194). PinX1 expression is reduced in many human tumours and an antisense construct against PinX1 mRNA favours tumour formation in nude mice (194)
It is unknown at the molecular level how telomeric proteins repress distally located telomerase in cis. One can imagine that gradual folding of the telomeric chromatin into a restrictive higher order configuration can impair telomerase activity. It has been proposed that folding of human telomeres into t-loops, favoured by the binding of telomeric proteins, provides a means to sequester the G-tail and thus to impair telomerase access to its substrate.
Connections between telomerase regulation and end capping. It is remarkable that factors involved in capping, like Rap1 and the Cdc13–Stn1–Ten1 complex in yeast and TRF2 in vertebrates, behave as cis-acting repressors of telomerase and telomere elongation (160,161,170,181; K.Ancelin and E.Gilson, unpublished results). In addition, several checkpoint and DNA repair factors appear to activate telomerase. This is the case for Mec3 (195), for the Rad50–Mre11–Xrs2/Nbs1 complex, for Rad1/Rad17/Mrt2 (196) and for the single strand-binding protein RPA (V.Schramke, J.Tonnelier, V.Brevet, M.P.Longhese, E.Gilson and V.Géli, submitted for publication). Accordingly, a transient relaxation of the end protection complexes at the time of telomere replication might be a crucial step for telomerase activation. In this respect, telomerase can be viewed as a double-strand break repair enzyme specifically acting on partially and/or transiently unprotected telomeres. This predicts fascinating new connections between telomerase and chromosome end stability.
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INHIBITING TELOMERASE |
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TOPABSTRACTINTRODUCTIONTELOMERASE REGULATIONINHIBITING TELOMERASESHORTCOMINGSCONCLUSIONREFERENCES |
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Telomerase is overexpressed in a large number of tumours whereas it is not expressed in most somatic cells, which usually have longer telomeres. This characteristic differential expression gives a rationale for further evaluation of telomerase as a target for new anticancer drugs. Several reviews concerning telomerase inhibitors have been published in the last few years (197–205). For this reason we will mainly focus on recent developments in the field. Different strategies have been developed in order to inhibit telomerase activity and interfere with tumour development (Fig. 2). Potential targets are: the catalytic subunit, the RNA component of telomerase, other proteins associated with telomerase and telomeric DNA. In the latter case, targeting telomeres may lead to other problems, since telomeres and proteins associated with telomeres are present in both normal and cancer cells. Other factors than telomerase activity (perhaps telomere length and accessibility) should therefore be proposed as a rationale for a specific effect on cancer cells.
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The search for telomerase inhibitors was made possible by the introduction of enzymatic tests that allow semi-quantitative measurement of telomerase activity in cell extracts. The now famous telomere repeat amplification protocol (TRAP) assay uses a polymerase amplification step after telomerase extension of a primer (206). Many variations and improvements of this test have been proposed (207–212) and many laboratories use related but not identical protocols for telomerase activity measurement. For these reasons, and because the TRAP assay involves amplification of the products by PCR, direct comparisons of the concentrations that inhibit 50% of telomerase activity (IC50) should be made with caution. Recently, these enzymatic tests have been applied in a high throughput screening format, allowing the systematic evaluation of thousands of chemicals and speeding up the discovery of inhibitors (213).
Targeting the catalytic subunit (hTERT)
hTERT seems the target of choice as this protein is the rate limiting factor for telomerase activity. A strong motivation for targeting telomerase is the existence of clinically useful inhibitors of reverse transcriptases, which fall into two major classes: (i) nucleoside analogs; (ii) other inhibitors which bind to a pocket located between the palm and thumb of reverse transcriptases.
Nucleoside analogs. Nucleoside analogs were initially tested against ciliate telomerase (214). A number of nucleoside reverse transcriptase inhibitors do show anti-telomerase activity (215,216).
Azidothymidine (AZT) has the potential to target the telomeric ends of chromosomes in cancer cells, promoting cell death (217–219). AZT, dideoxyinosine (ddI) and AZT-5' triphosphate (AZT-TP) do not cause major changes in telomerase activity or telomere length in MCAS cells. However, ddI and AZT-TP reduce telomerase activity and shorten the length of the telomere in HEC-1 cells in a dose- and time-dependent manner, showing that the effect of reverse transcriptase inhibitors can be cell type specific (220). AZT causes progressive telomere shortening in some but not all T and B cell cultures (221). AZT-treated tumour cells have reduced tumourigenicity in syngeneic BALB/c mice (222).
Other reverse transcriptase inhibitors have also been tested against telomerase, but the selectivity of these agents for telomerase versus other polymerases is a major concern. Among the L-enantiomers of NTPs, L-dTTP and L-dGTP inhibit telomerase activity while the others show slight or no inhibitory effect (223). Recently, a very potent nucleoside telomerase inhibitor, 6-thio-2'-deoxyguanosine 5'-triphosphate (TDG-TP), has been described. The chemical formula of this compound, as well as of some other inhibitors, is shown in Figure 3. Its low IC50 (0.06 µM) and relative specificity versus other reverse transcriptases suggest that a major step forward has been made (216). TDG-TP is incorporated into the DNA by telomerase in the absence of dGTP, but unlike dGTP there is little extension of the DNA chain after its incorporation (224). 2',3'-Dideoxyguanosine 5'-triphosphate, carbovir 5'-triphosphate and D-carbocyclic-2'-deoxyguanosine 5'-triphosphate also inhibit telomerase activity (216).
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Other catalytic inhibitors. Screening of a chemical library of 16 000 synthetic compounds yielded six telomerase inhibitors, which included four isothiazolone derivatives (213). The most potent inhibitor, 2-[3-(trifluoromethyl)phenyl]isothiazolin-3-one (TMPI), has an IC50 of 1 µM against telomerase. Analysis using partially purified telomerase from AH7974 rat hepatoma cells demonstrates non-competitive inhibition with the telomere repeat primer and mixed inhibition with the dNTPs. Inhibition by TMPI is highly selective for telomerase and is quenched by dithiothreitol and glutathione, suggesting that TMPI inhibits telomerase by acting at a cysteine residue. A group of rubromycins and their analogues (a class of quinone antibiotics that possess benzofuran and benzodipyran rings) inhibit human telomerase as assessed with a modified telomeric repeat amplification protocol (IC50 = 3 µM) (225). A kinetic study revealed a competitive interaction with respect to the telomerase substrate primer. ß-Rubromycin is a potent inhibitor of other reverse transcriptases but has virtually no effect on DNA and RNA polymerases, deoxyribonucleases and topoisomerases.
Furthermore, scientists from Boerhinger Ingelheim have recently described carboxylic amide derivatives (BIBR 1532) that interact with the catalytic subunit (IC50 = 0.093 µM). These derivatives induce progressive telomere shortening and delayed growth arrest (226).
Antisense oligonucleotides/ribozymes. To our knowledge, there have been very few reports of short antisense oligonucleotides targeted to the catalytic subunit mRNA. Phosphorothioate anti-hTERT oligomers 20–22 bases long (5–15 µM) induce delayed inhibition of cell viability in the DU145 prostate cancer cell line (227). However, no reduction in telomere length is observed even after 45 days treatment. Among four different antisense oligonucleotides directed against the mouse TERT mRNA, a 19mer overlapping the translation intitiation codon inhibits production of the protein in developing brain neurons (228). On the other hand, ribozymes have been tested against hTERT by transient and stable transfection procedures. A ribozyme targeting 13 nt downstream from the 5'-end of hTERT mRNA exhibits the strongest telomerase inhibitory activity. A stable transfection study confirmed that this ribozyme suppresses telomerase (229). Ribozyme cleavage of telomerase mRNA also sensitises breast epithelial cells to inhibitors of topoisomerase (230).
Inhibiting hTERT phosphorylation. Two PKC inhibitors (bis-indolylmaleimide I and H-7) produce a strong inhibition of telomerase activity in treated cells. The inhibition of telomerase activity by PKC inhibitors appears to be somewhat specific, since the treated cells are mostly viable and still retain significant levels of protein synthesis capability (92). However, it is difficult to imagine how hTERT phosphorylation may be specifically affected without interfering with the phosphorylation of other physiologicaly relevant PKC targets (for a review on PKC inhibitors see ref. 391).
Inhibiting hTERT transcription. Inhibiting hTERT transcription in a specific manner is a promising approach to achieve telomerase inhibition. Only a few compounds have been tested for this transcriptional inhibition. Arsenic is effective in the treatment of some leukaemias, despite its carcinogenic properties. Interestingly, it has recently been demonstrated that arsenic inhibits transcription of the hTERT gene and this effect may in part be explained by decreased c-Myc and Sp1 transcription factor activities (67).
Targeting RNA (hTR)
The RNA component of telomerase (hTR) is absolutely required for telomerase reverse transcription and is therefore a natural target for anti-telomerase agents. In contrast to hTERT, hTR is present in many normal tissues that do not express telomerase activity. No role for hTR in telomerase-negative cells has been demonstrated so far. As a consequence, inhibition of hTR in telomerase-negative cells such as normal somatic cells is not expected to be toxic. Different strategies have been successfully tested to target hTR.
The antisense approach. The antisense approach has been widely exploited and directed to the 451 nt long human telomerase RNA. This strategy benefits from the wealth of data accumulated on antisense oligonucleotides. However, the hTR target has some original characteristics. (i) It is not mRNA and will not be translated into protein: an antisense oligomer will not have to compete with the ribosomal machinery. As a consequence, RNase H-independent inhibition of telomerase activity should be possible. (ii) hTR provides a template (nt 46–56, r-5'-CUAACCCUAAC-3') for reverse transcription. Therefore, this region of the RNA is expected to be highly accessible. A recent comparison of vertebrate telomerase RNA genes from a variety of species indicates evolutionary conservation of the global architecture of telomerase RNA and should help in the identification of other regions that may be targeted by antisense oligomers (231).
The original antisense approach used an expression vector that allowed the synthesis of a long antisense RNA. This key experiment demonstrated that hTR was indeed the RNA component of telomerase (12). An antisense vector against human telomerase RNA has also been introduced into human malignant glioma cells exhibiting telomerase activity. After 30 doublings, some sub-populations of transfectants express a high level of interleukin lp-converting enzyme (ICE) and undergo apoptosis. In contrast, other sub-populations show enhanced ICE protein but escape from apoptotic crisis and continue to grow, although their DNA synthesis, invasive ability and tumourigenicity in nude mice are significantly reduced (232).
Short oligomers have also been targeted to hTR RNA. The chemical formulae of some of these agents are presented in Figure 4. Peptide nucleic acids (PNAs) in which the sugar–phosphate backbone has been replaced by N-(2-aminoethyl)glycine recognise the RNA component of human telomerase (hTR) and inhibit activity of the enzyme with IC50 values in the picomolar to nanomolar range provided that the hTR template is targeted (233). The exact identification of determinants for inhibitor binding within the RNA active site of human telomerase has been performed using PNA scanning (234). Anti-hTR PNAs are co-electroporated into immortal human cells as PNAs do not readily enter cells. Introduction of these agents effectively inhibits telomerase activity in intact cells, shortens telomeres, reduces colony size and arrests cell proliferation after a lag period of 5–30 cell generations, consistent with suppression of their ‘immortality’ (235). Other methods of PNA cellular delivery have been proposed besides electroporation (236,237).
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In contrast, phosphorothioate oligonucleotides (PS) inhibit telomerase in a non-sequence-selective fashion (233) and probably act by interacting with the catalytic subunit rather than the RNA. 2'-O-methyl-RNA (2'-O-MeRNA) inhibits telomerase with a potency superior to those possessed by analogous PNAs, despite a lower binding affinity for complementary RNA (238,239). 2'-O-(2-methoxyethyl)-RNAs (2'-MOE) possess favourable pharmacokinetic properties and inhibit human telomerase with IC50 values of 5–10 nM (240). After introduction into DU145 prostate cancer cells inhibition of telomerase activity persisted for up to 7 days.
2',5'-Oligoadenylate (2-5A) antisense oligomers directed against telomerase RNA are also efficient binders (241,242). In these experiments, a 2',5'-oligoadenylate was attached to the oligonucleotide in order to recruit and activate a specific endoribonuclease (RNase L) at the target site of the RNA sequence. A 19mer antisense oligonucleotide targeted against the RNA component of human telomerase (hTR) has been linked to a 2-5A molecule (2-5A–anti-hTR) and tested on prostate cancer cells. After continuous treatment for 1–2 weeks, these cells underwent massive apoptosis (242). This delay is probably too short to be the result of gradual telomere shortening. This treatment reduces cell viability and induces apoptosis by activated caspase family members. Furthermore, treatment of subcutaneous tumours in nude mice with 2-5A–anti-hTR significantly suppresses tumour growth through apoptosis induction (243). This antisense agent also exhibits an antitumour effect on an intracranial malignant glioma model in nude mice (244,245).
Various phosphoramidate derivatives, including 2'-deoxy-, hydroxy-, methoxy- and fluoro-N3'
P5' phosphoramidates have recently been tested against telomerase in vitro. These compounds demonstrate sequence-specific and dose-dependent activities with IC50 values <1 nM (246). Again, oligonucleotides with the highest anti-telomerase activity are complementary to a significant portion of the template region, especially the rCCC segment. Interestingly, two other sites in the hTR primary sequence are susceptible to phosphoramidate inhibition (IC50 values down to 0.4 nM). These compounds are also efficient in various cell lines, provided they are vectored with a lipid carrier (IC50 = 0.1–0.5 µM in seven different cell lines).
Ribozymes. A hammerhead ribozyme directed against the RNA component of human telomerase shows a specific cleavage activity for the telomerase RNA component and inhibits telomerase activity in cell extracts (247). When ribozyme RNAs are introduced into endometrial carcinoma cells, only those targeting the RNA template region are able to inhibit telomerase activity (248). An anti-hTR ribozyme delivered to growing melanoma cells inhibited telomerase activity (249). The ribozyme sequence was then cloned into an expression vector and transfected into JR8 cells. The cell clones obtained showed reduced telomerase activity and significantly longer doubling times, but no telomere shortening.
The RNA/DNA duplex. Telomeric DNA synthesis by telomerase reverse transcription involves the formation of a transient DNA/RNA duplex of up to 11 bp. Molecules that bind to this duplex could inhibit the enzyme by either preventing strand dissociation or by sufficiently distorting the substrate, thereby causing a misalignment of key catalytic residues. These agents do not strictly target hTR, but its interaction with the substrate. Four intercalators show promising anti-telomerase activity in the low micromolar range (250). Equilibrium dialysis (251) should help to discover ligands that preferentially bind to this heteroduplex. A comparison of the binding of 84 different compounds to a poly(rA)·poly(dT) hybrid led to the discovery of five compounds with higher than average affinity (252). However, other key cellular processes involve RNA/DNA duplexes, such as Okasaki fragments occurring during replication of the lagging strand, and these processes would also be affected. In addition, RNase H activity is inhibited by these ligands (252).
Modifying the hTR RNA template. Telomerase hTR gene constructs containing various mutant templates decrease cellular viability and increase apoptosis even when expressed at low levels in prostate (LNCaP) and breast (MCF-7) cancer cell lines (253). This occurs despite retention of normal levels of endogenous wild-type telomerase RNA and endogenous wild-type telomerase activity and unaltered stable telomere lengths. Mutant template telomerase RNAs exert a strongly dominant negative effect on cell proliferation and tumour growth. Even very limited synthesis of mutated sequences can affect telomere structure in human cells and the toxicity of mutant telomerases is due to telomere dysfunction. These results support the potential use of mutant template telomerase RNA expression as an anti-neoplastic strategy. In another study, cells expressing mutant telomerases had a slower growth rate, abnormal cell cycle, aberrant nuclei, fused chromosomes and reduced viability (254). All phenotypes were apparent within the first few cell divisions after expression of mutant hTR. However, mutant telomerase activity is progressively selected against with cell culturing and this correlates with the disappearance of cells with aberrant phenotypes, illustrating a type of resistance mechanism.
The use of a small region of telomerase RNA as a template (11 nt) implies that telomerase establishes boundaries that prevent the reverse transcription of surrounding regions. There may be a physical barrier consisting of a protein–RNA interaction or an RNA structure that efficiently prevents utilisation of the next RNA nucleotide. If this barrier could be partially released, copying of these extra nucleotides would lead to mutated telomeric DNA repeats, which could in turn lead to the same apoptotic phenomenon described by Blackburn and co-workers (253). In that case, it would not be necessary to introduce an extra mutated hTR gene. However, this requires a drug that would disrupt such putative RNA–protein or RNA–RNA interactions. However, no molecule which could act in a similar fashion to some antibiotics that target rRNA has yet been described, although we believe that this strategy is promising.
Targeting other telomerase components
TEP1. TEP1 has been identified as a telomerase component, although its seems dispensable for telomerase activity. A mTep1–/– mouse showed no apparent change in telomere length or telomerase activity over six generations (255). TEP1 acts in vivo rather as an integral vault protein (256). It is therefore unlikely that targeting of TEP1 would lead to telomerase inhibition and no attempt has been reported.
Chaperones. Inhibition of hsp90 blocks assembly of active telomerase (257). Geldanamycin, which targets hsp90, partially reduces hsp90-stimulated telomerase activity (258). MKT-077 binds to an hsp70 family member and inhibits telomerase (259). However, all drugs targeting chaperones will interfere with many cellular processes besides telomerase activity.
Targeting telomere counting proteins. Several human proteins participate in the telomere counting mechanism. The higher the number bound to the telomere, the less likely it is that telomerase is recruited to that telomere. Therefore, modulating the number of DNA-bound proteins such as TRF1 or TRF2 could in turn inhibit or enhance telomerase activity. However, achieving such modulation by pharmacological drugs does not seem a simple task. It has been proposed that PARP inhibitors (provided they are also active on TANK1 and TANK2) may indirectly inhibit telomerase activity. Tankyrase promotes telomere elongation in human cells (190): an anti-tankyrase molecule should therefore induce telomere shortening. However, tankyrase inhibitors that do not affect other PARPs remain to be discovered.
Targeting telomeric DNA rather than telomerase
Targeting the substrate of an enzyme is an original way to inhibit its activity. There are fundamental differences between the targeting of telomeres and the targeting of telomerase subunits (hTR, hTERT or associated factors). Telomeres exist in the absence of telomerase activity and play at least one fundamental role in telomerase-negative cells, the protection (capping) of chromosome ends. Telomere-interacting molecules might then have an effect on immortal cells that regulate telomere length via the ALT pathway (a potential benefit) but also on normal/mortal cells that do not maintain telomere length, leading to undesired toxicity.
Cisplatin and other antitumour agents. Yeast telomeres are susceptible to cisplatin-induced intrastrand crosslinks and SsI2 (Rad25) and the nucleotide excision repair pathway may play a critical role in repair of this damage (260). Ciliate telomeric tandem repeats are guanosine rich and susceptible to crosslinking by cisplatin (261). Cisplatin reduces telomerase activity in a specific and concentration-dependent manner in human testicular tumour cells (262) but not in nasopharyngeal cancer cells (92). Sub-lethal doses of vincristine, an antineoplastic alkaloid, induce a decline in telomerase activity in three different human lymphoma cell lines, without a concomitant decrease in hTERT mRNA levels (263). Etoposide, a well known topoisomerase II poison, is able to stimulate cleavable complex formation at telomeric DNA sequences. This is due to the sequence selectivity of epipodophyllotoxin derivatives, which preferentially induces topoisomerase II-mediated DNA cleavage at (C/G)T sites. By itself, etoposide does not inhibit telomerase, but topoisomerase lesions at telomeres may interfere with telomere replication by a mechanism analogous to the fork collision model (264,265). Other DNA topoisomerase I and II inhibitors induce senescence-associated ß-galactosidase expression and cell division arrest in normal human fibroblast. The cells resume growth upon removal of the inhibitors and accelerated telomere shortening is not observed in the arrested cells, in contrast to telomerase inhibitors (266).
Ionising radiation also modulates telomerase activity. A dose-dependent decrease in telomerase activity is usually observed in proportion to tumour regression after radiotherapy (267). However, low doses of radiation may have an opposite effect in some lymphoma or myeloma cell lines (268).
G4 DNA. Chromosomal DNA of ciliates, yeasts and vertebrates ends in a single-stranded 3'-overhang (Table 1). The overhang length and the identity of the 3'-terminal nucleotide are tightly regulated in ciliates (269). The human overhang is longer and may be involved in different DNA conformations, such as T-loops (270), triplexes (271) or G-quadruplexes (128–131). G-quadruplexes are highly polymorphic; there are three classes of G-quadruplex structures: (i) G4 DNA, a parallel quadruplex formed by four independent strands (272,273); (ii) G'2 DNA, an antiparallel bimolecular quadruplex (274,275); (iii) G4' DNA, resulting from intramolecular folding of a single strand (276,277; for a review see 278). A DNA strand carrying at least four blocks of consecutive guanines may fold into an intramolecular G4' structure, schematically presented in Figure 5, upper left. In the case of the human telomeric overhang, this motif is compatible with the formation of three adjacent G-quartets. Each G-quartet involves four co-planar guanines (Fig. 5, upper right). The 3-dimensional structure of the telomeric quadruplex has been solved (277). In the presence of sodium, this G-tetraplex is stabilised by three stacked G-tetrads which are connected by two lateral loops and a central diagonal loop. Of the four grooves that are formed, one is wide, two are of medium width and one is narrow. Three of the four adenines stack on top of adjacent G-tetrads, while the majority of the thymines show multiple conformations. There are a number of proteins that either bind to preformed quadruplex DNA (279–281), induce its formation (282), unwind (283–285) or cleave it (for a review see 278). Some of these proteins play a role in telomere maintenance (286–289) or other key processes, such as meiosis or immunoglobulin switch recombination.
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In vitro folding of telomeric G-rich single strand quadruplex DNA has been found to inhibit telomerase activity (132). It was deduced from this observation that a molecule that favours quadruplex formation locks the telomeric substrate into an inactive conformation which is no longer recognised nor extended by the enzyme. Stabilisation of G-quadruplexes can then be considered an original strategy to achieve antitumour activity (290,291). G4 ligands require structural selectivity, i.e. preferential binding to quadruplexes over duplexes and single strands. DNA structure-specific (rather than sequence-specific) ligands have been identified previously (292). The quadruplex itself, which is very different from classical double-stranded B-DNA, provides a good structural basis for selective recognition and such an assumption has been shown to be correct (293,294). These pioneering studies have opened up a new field in the area of ligand–DNA interactions. In recent years a large number of quadruplex ligands have been found, such as porphyrins (295–297), perylenes (298), amidoanthracene-9,10-diones (299), 2,7-disubstituted amidofluorenones (300) and indoloquinolines (301) (for a review see 278). Nevertheless, most of these molecules have a relatively modest potency, with IC50 values above (and sometimes greatly above) 1 µM. An important improvement has been achieved in the last few months, as several laboratories, including ours, have identified much better G4-based telomerase inhibitors, with IC50 values between 0.02 and 0.2 µM (Table 2 and Fig. 5, lower part) (302–306). We have used a fluorescence resonance energy transfer-based method to discover new G4-based telomerase inhibitors (303,307). Thousands of molecules have been screened and at least four independent families of ligands found [ethidium derivatives (304), dibenzophenanthrolines (303), triazines (308) and bis-acridines (309)]. Some of these molecules may act as quadruplex probes, as their fluorescence is strongly enhanced in the presence of quadruplex DNA (304). Their affinities for quadruplex DNA range from 106 to 108 M–1.
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Most quadruplex ligands are polyaromatic molecules bearing one or more positive charges. A notable exception to that rule is N-methyl mesoporphyrin IX (NMM) (296), an anionic porphyrin which binds almost exclusively to quadruplexes. Equilibrium dialysis assays allow one to conclude that this derivative, perhaps thanks to its negative charge and despite a relatively low affinity, is the most selective quadruplex ligand studied so far (251). Very little structural data is available on the mode of interaction of these molecules with quadruplex DNA (298). The geometry of these compounds suggests that they interact by stacking on a terminal quartet. The surface of a quartet is much larger than the surface offered by a base pair, explaining in part how a large aromatic molecule may have a preference for quadruplex DNA, thanks to favourable stacking interactions. True intercalation between adjacent quartets should be disfavoured as a result of the energetic penalty required to unstack two quartets and eject a monocation (310). Nevertheless, some results suggest that this mode of binding might be observed in specific cases (311). Experimental observations, by either NMR or site-specific cleavage studies (312), tend to favour more plausible modes of binding of ligands to G-quadruplexes, i.e. external stacking on a terminal quartet. However, interactions such as groove binding have to be considered as well, since G-quartets are likely to form four different G grooves and/or expose adenine/thymine loops that may be specifically recognised by the ligands.
Motifs for the formation of G-quadruplex-prone DNA sequences other than telomeres are present in different regions of eukaryotic genomes: they are especially abundant in regions of biological significance, such as promoters of many important genes (the c-myc oncogene), rDNA repeats (313) and recombination hotspots. The nuclease-hypersensitive element of the c-myc promoter region, which forms a stable Watson–Crick double helix under physiological conditions, can be effectively converted to G-quadruplex DNA by a quadruplex ligand (313). This could in turn modulate the expression of that gene. Finally, telomere-like repeats have been identified at several internal sites on human chromosomes using a long synthetic (T2AG3)n probe (314). Three classes of interstitial telomeric sequences have been characterised: (i) short repeats, composed of a few essentially exact T2AG3 units; (ii) sub-telomeric repeats, composed of larger arrays (several hundred base pairs) including many degenerate units within sub-telomeric domains; (iii) fusion repeats, in which two extended stretches of telomeric repeats are oriented head-to-head (315). Finally, guanine-rich RNA