Published online 11 May 2004
Nucleic Acids Research, 2004, Vol. 32, No. 8 2586-2593
© 2004 Oxford University Press
Hepatocyte Nuclear Factor 4
enhances the Hepatocyte Nuclear Factor 1
-mediated activation of transcription
INSERM Unit 459, Laboratoire de Biologie Cellulaire, Faculté de Médecine H. Warembourg, 1 Place de Verdun, F 59045 Lille, France
*To whom correspondence should be addressed. Tel: +33 3 20 62 69 51; Fax: +33 3 20 62 68 84; Email: blaine{at}lille.inserm.fr
Received March 2, 2004; Revised April 2, 2004; Accepted April 13, 2004
| ABSTRACT |
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Hepatocyte Nuclear Factor 1
(HNF1
) and Hepatocyte Nuclear Factor 4
(HNF4
) are two liver-enriched transcription factors coexpressed in specific tissues where they play a crucial role through their involvement in a complex cross-regulatory network. HNF1
down regulates HNF4
-mediated activation of transcription via a direct proteinprotein interaction. Here we show that HNF4
enhances the transcriptional activity of HNF1
in a DNA binding independent manner, thus indicating that it behaves as a HNF1
coactivator. Using mutations in the ligand binding domain (LBD) of HNF4
, we confirmed the involvement of the Activation Function 2 module and demonstrated the requirement of the integrity of the LBD for the interaction with HNF1
. Moreover, we show that HNF4
cooperates with p300 to achieve the highest HNF1
-mediated transcription rates. Our findings highlight a new way by which HNF4
can regulate gene expression and extend our knowledge of the complexity of the transcriptional network involving HNF4
and HNF1
. | INTRODUCTION |
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Hepatocyte Nuclear Factor 1
(HNF1
) and Hepatocyte Nuclear Factor 4
(HNF4
) are two liver-enriched transcription factors that are also expressed in kidney, intestine and endocrine pancreas (1). They are involved in complex cross-regulatory networks that determine the phenotype of hepatocytes and pancreatic ß-cells (13). HNF1
is a homeodomain-containing transcription factor (1) whereas HNF4
belongs to the hormone nuclear receptor superfamily (4). Both transcription factors are highly conserved during evolution (4,5). HNF1
and HNF4
directly modulate the expression of a large number of genes (4,6,7). They can also modulate transcription indirectly through the above mentioned transcription factor network, including a HNF1
-mediated negative regulation of genes activated by HNF4
(8,9). The roles of these transcription factors in vivo have been confirmed by defects linked to the invalidation of their genes in mice (1014). Further underscoring the importance of these transcription factors, mutations in HNF1
and HNF4
genes have been identified in patients with Maturity Onset Diabetes of the Young, MODY3 and MODY1, respectively (15,16). MODY1 and MODY3 mutations result in loss of function of these transcription factors (17). Moreover, it has been reported that expression of a HNF1
dominant negative mutant linked to MODY3 led to an impaired function of pancreatic ß-cells (18).
HNF1
contains two domains involved in DNA binding (an atypical homeodomain and a POU-like domain), an N-terminal dimerization domain and a C-terminal transactivation domain (1). Several proteins interact with various HNF1
domains and play crucial roles in HNF1
function. DcoH (Dimerization Cofactor of HNF1), is a small protein, which binds to the HNF1 dimerization domain and is involved in dimer stabilization (19). The ability of various HNF1
domains to interact with multiple coactivators allows formation of a platform for recruitment of a transcriptional complex, leading to a strong enhancement of transcription. CBP/p300 interacts with both the DNA binding domain and the activation domain of HNF1
while P/CAF, SRC-1 and RAC3 interact with the HNF1
activation domain (20,21). Each of these coactivators can independently increase activation of transcription by HNF1
. In addition, they cooperate with each other to further enhance the HNF1
-mediated activation of transcription (21). HNF1
can also interact with GATA 4, GATA 5 and Cdx-2 transcription factors (22). The interactions between HNF1
, GATA5 and Cdx-2 lead to a cooperative enhancement of HNF1
-mediated activation of transcription (22). A synergy between HNF1
and neurogenin 3 was also recently reported (23). HNF1
down regulates HNF4
-mediated activation of transcription via a direct interaction of these transcription factors (8,9).
In this work, we show that HNF4
enhances the transcriptional activity of HNF1
, and that the cooperation between both factors can be further enhanced by p300 recruitment.
| MATERIALS AND METHODS |
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DNA constructs
Plasmids pcDNA3 HNF4
2 and pcDNA3 HNF4
2-E276Q were previously described (24). Plasmid pcDNA3 HNF4
2-D126Y was described by Oxombre et al. (25). Plasmids pcDNA3 HNF4
2-E262A and pGEX2TK HNF4
2 were described by Eeckhoute et al. (26). Plasmids pcDNA3 HNF1
and pcDNA3 HNF1
-P291fsinsC, here named HNF1
-
AD, were generous gifts from Drs M. Yaniv and A. Abderrahmani, respectively. Plasmids pcDNA3 HNF4
2-A223F and pcDNA3 HNF4
2-AF2mut were obtained by site-directed mutagenesis using the QuickChangeTM kit (Stratagene) to introduce the A223F or the three mutations E363K, L365Q and L366Q, respectively. Plasmid pM3-VP16 was from Clontech and pcDNA3-RXRß encoding the full-length human RXRß was a generous gift from Dr R. Polakowska. Plasmid pGEX2TK HNF1
was prepared by a strategy identical to that used for cloning pGEX2TK COUP-TFII (24) by inserting a PCR fragment encompassing the human HNF1
cDNA. Plasmid pCMVß-NHA p300, PGEX2TK p300(1595), PGEX2TK p300(340528) and PGEX2TK p300(15722370) were kindly provided by Dr S. R. Grossman. Expression plasmids for VP16, Np300-VP16 and Cp300-VP16 were gifts from Dr D. Hum (27). Plasmid pGL3 (96/+11) LPK was a generous gift from Dr M. Vasseur-Cognet (28). Plasmid pGL3 (341/+183) human HNF1
was a gift from Dr G. Bell. Plasmid (GAL4)x5 TATA Luc was described by Chang and Gralla (29). Plasmid pGL3 HNF1
-TATA-Luc was cloned by inserting a double-stranded oligonucleotide encompassing the HNF1
binding site (56/ 35) of the SRC promoter into the SacI/NheI sites of the pGL3 basic vector in which the TATA box of the adenovirus major late promoter had been previously cloned as described by Suaud et al. (24). All constructs were verified by DNA sequencing.
GST pull-down assays
GST pull-down assays were performed as described previously (24) using [35S]methionine-labelled in vitro synthesized HNF1
or HNF4
and bacterially expressed GST-fusion proteins indicated in legends to figures.
Cell culture and transient transfection assays
HeLa cells (5.5 x 104 cells per 24-well dish) were grown and transfected as described by Eeckhoute et al. (30) with plasmid amounts indicated in figure legends. Luciferase activities were measured using the Bright-Glo Luciferase assay system (Promega).
Western blotting
Western blotting performed from whole-cell extracts and using the
455 HNF4
antiserum was carried out as indicated by Eeckhoute et al. (26).
Data analysis
Statistical analyses were based on Students t-test for unpaired data using Prism software. Statistical significance was set at ***P < 0.001, **P < 0.01 and *P < 0.05.
| RESULTS |
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Enhancement of HNF1
-mediated activation of transcription by HNF4
HNF1
and HNF4
can positively regulate one anothers expression in cell types that endogenously express these two factors (3,6). To avoid any interference with the endogenous proteins, the effect of HNF4
on the transactivation activity of HNF1
was analysed in HeLa cells. The experiments were performed on a synthetic promoter consisting of one HNF1
binding site located upstream of the TATA box (HNF1
-TATA promoter) and on the natural liver pyruvate kinase promoter (96/+11) LPK containing one HNF1
binding site (site L1, position 96/72) but lacking the HNF4
response element (28). As expected, both promoters were activated by HNF1
but not by HNF4
(Fig. 1A and B). Cotransfection of HNF1
and HNF4
resulted in a marked increase in the HNF1
-mediated activation of these promoters (2.8- and 3.4-fold activation of the synthetic and LPK promoters, respectively) (Fig. 1A and B). The enhancement of the HNF1
activity was not impaired when introducing the D126Y mutation in HNF4
, which significantly decreases its DNA binding and transactivation activities (25) (data not shown), thus confirming that the synergy between HNF1
and HNF4
does not require the DNA binding-dependent activities of HNF4
(Fig. 1A and B). This induction was not an artefact linked to expression of a protein since cotransfection of an unrelated factor failed to enhance the HNF1
-mediated activation of transcription (compare the second and last columns in Fig. 1A and B).
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To control the possibility that HNF4
does not act as a transcriptional partner of another transcription factor, we analysed the effect of HNF4
on the VP16 activation domain fused to the GAL4 DBD (construct GAL4-VP16). HNF4
was unable to enhance the VP16-mediated activation of transcription (Fig. 1C), thus indicating the selectivity of the cooperation between HNF4
and HNF1
.
As predicted from the results of Ktistaki and Talianidis (9), we observed that full-length HNF1
and HNF4
physically interact (Fig. 1D). Interestingly, pull-down experiments also showed that HNF1
lacking its activation domain (HNF1
-
AD) efficiently interacted with HNF4
(Fig. 1D). This result indicates that the sequence 1291 of HNF1
, containing the dimerization and DNA binding domains, is able to interact with HNF4
. This prompted us to investigate whether coexpression of HNF4
and HNF1
-
AD could activate the HNF1
-TATA promoter. Despite their efficient interaction, HNF1
-
AD and HNF4
were unable to activate transcription (Fig. 1E), thus indicating that cooperation between HNF1
and HNF4
requires the HNF1
activation domain.
AF2 is not the only sequence within the HNF4
LBD required for interaction and cooperation with HNF1
The repressive action of HNF1
on HNF4
was unambiguously shown to require the HNF4
LBD (9). However, using truncated fragments of HNF4
, Ktistaki and Talianidis mapped the sequence involved in the interaction with HNF1
between residues 337 and 368, leading to the conclusion that the HNF4
AF2 activation function is necessary and sufficient for interaction with HNF1
(9). In fact, this sequence does not contain solely the AF2 (sequence 358366 corresponding to helix 12 of the LBD), but also a fragment forming part of the large helix termed H10H11, according to conventional nomenclature (31). Indeed, H10 and H11 are contiguous in HNF4
and form a helix that plays a key role in HNF4
function (31). Furthermore, the integrity of this helix is crucial for protein conformation (32). These recent findings begged a re-evaluation of the HNF4
sequence involved in interaction with HNF1
. Using full-length HNF4
, we analysed the effects of point mutations located in the HNF4
LBD (Fig. 2A) on the interaction and cooperation with HNF1
. The E262A mutation was shown to affect HNF4
dimerization (26). The E276Q mutation does not alter the intrinsic HNF4
transcriptional activity but impairs recruitment of HNF4
transcriptional partners (24,33). Owing to the bulky side chain of phenylalanine, the A223F mutation was hypothesized to affect occupancy of the ligand binding pocket by fatty acids that act as structural cofactors rather than as conventional ligands (31). Accord ingly, A223F mutation mildly impaired HNF4
transcriptional activity and interaction with coactivators (data not shown). In the AF2 module, the acidic group of the amino acid residue side chain at position 363 and the hydrophobic nature of the amino acid residue side chain at position 365 are strictly conserved and play a key role in nuclear receptor function (34). Residue L366 is also important since the L366Q mutation alters HNF4
transcriptional activity (35). Pull-down assays showed that introducing three mutations E363K, L365Q and L366Q in the AF2 (HNF4
-AF2mut construct) altered interaction between HNF4
and HNF1
(Fig. 2B). Note however that the decrease in interaction was mild. This result confirms the involvement of the AF2 in the interaction between HNF1
and HNF4
but indicates that this module is not the unique sequence required for interaction between these proteins. Interaction with HNF1
was also significantly decreased by the A223F and E276Q mutations while mutation E262A had no effect (Fig. 2B). Consistent with data from pull-down assays, the HNF4
-mediated enhancement of HNF1
-dependent transcriptional activation of the (96/+11) LPK promoter was not impaired by the E262A mutation but was significantly decreased with the mutants A223F, E276Q and HNF4
-AF2mut (Fig. 2C). We controlled so that mutant and wild-type HNF4
were expressed at a similar level in transfected cells as shown in Figure 2D for mutants A223F and HNF4
-AF2mut and in (24,26) for the mutant E276Q and E262A, respectively. It appears therefore that the interaction and cooperation between HNF4
and HNF1
depend on both the AF2 module (helix 12) and the integrity of the HNF4
LBD.
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HNF4
cooperates with the coactivator p300 to enhance HNF1
transcriptional activityBecause CBP/p300 are key coactivators of HNF1
, we hypothesized that cooperation between HNF4
and HNF1
could involve p300. In the absence of HNF1
, the coactivator p300 alone or coexpressed with HNF4
was unable to activate the HNF1
-TATA promoter (Fig. 3A). On this promoter, p300 slightly enhanced HNF1
transcriptional activity (Fig. 3A). Note that this moderate increase is due at least in part to the low ratio of p300/HNF1
expression vectors used in our experiments (3:1) compared to that used in other studies performed on other promoters [e.g. 10:1 in Soutoglou et al. (21)]. We have verified that by using a higher ratio, we could obtain a stronger enhancement of HNF1
activity by p300 alone (data not shown). Interestingly, in the presence of HNF4
, p300 synergistically enhanced HNF1
-mediated activation of transcription: the activity of the promoter was increased 18.4-fold, which is 4.7-fold higher than the additive value for the induction of HNF1
activity by p300 and HNF4
alone (1.8 and 2.1, respectively). The marked p300-mediated enhancement of cooperation between HNF1
and HNF4
could also be observed on the (96/+11) LPK promoter (Fig. 3B). On both promoters, the enhanced cooperation between HNF1
and HNF4
was significantly impaired by mutations in the HNF4
AF2 module (Fig. 3A and B). These results strongly argue for the involvement of HNF4
in the p300-mediated activation of these promoters despite the absence of HNF4
response element in their sequences. The result obtained with the HNF4
-AF2mut led us to investigate whether mutations in AF2 affect p300 binding. Pull-down experiments clearly showed a much weaker interaction of p300 with HNF4
-AF2mut than with wild-type HNF4
(Fig. 3C). This result is in line with our previous observation that deletion of the AF2 resulted in a decrease in interaction (about 70%) between HNF4
and p300 (33). Therefore, we cannot exclude that the impaired cooperativity of HNF4
-AF2mut was also due to reduced p300 recruitment. Because it has been documented that HNF4
and CBP/p300 form a transcriptionally active complex (36), we verified whether in our experimental conditions this complex was sufficient to achieve the strong cooperation. This question was addressed by the use of human HNF1
promoter containing a HNF4
response element but lacking a HNF1
binding site. Using the same p300/HNF4
expression vector amounts used in Figure 3A and B, cotransfection of p300 failed to strongly enhance the HNF4
-mediated activation of transcription (Fig. 3D). It appears therefore that the strong activation of transcription observed in Figure 3A and B requires a ternary complex including HNF1
, HNF4
and p300.
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With the aim to investigate the mechanism underlying the p300-mediated enhancement of the cooperation between HNF1
and HNF4
, we surveyed the p300 domains involved in interactions with these transcription factors. Using a double hybrid approach, it was previously shown that the sequences 180662 and 18182079 of p300 interact with the HNF1
transactivation domain (20). Using GST pull-down assays, we mapped more precisely the amino-terminal sequence of p300 involved in interaction with full-length HNF1
between residues 340 and 528 (Fig. 4B). We also confirmed that full-length HNF1
interacts with the carboxy-terminal region of p300 (Fig. 4C). We have previously shown the ability of HNF4
to interact with the amino-terminal domain of p300 (33). HNF4
also interacted with the p300 carboxy-terminal region as shown in Figure 4C. The presence of multiple interaction surfaces between these proteins led us to analyse the effect of HNF4
on the recruitment of the amino- and carboxy-terminal regions of p300 to HNF1
. The strategy consisted of determining whether HNF4
affects the cooperation between HNF1
and the amino- or carboxy-terminal fragments of p300 fused to the VP16 activation domain named Np300-VP16 and Cp300-VP16, respectively (Fig. 4A). Expression of the VP16 activation domain affected neither the basal activity of the promoter nor its activity in the presence of expression vectors for HNF1
alone or together with HNF4
(Fig. 4D, left part). Expression of Np300-VP16 failed to affect the basal activity of the promoter and the HNF1
-mediated activation of this promoter (Fig. 4D, middle). Similar results were obtained with expression of Cp300-VP16 (Fig. 4D, right). Conversely, in the presence of both HNF1
and HNF4
, Np300-VP16 and Cp300-VP16 markedly enhanced the promoter activity (Fig. 4D). These results indicate that, in a cellular context, p300 recruitment by the HNF1
HNF4
complex can be mediated through both its amino- and carboxy-terminal regions and reinforce data obtained in Figure 3 suggesting that HNF4
improves p300 recruitment to a promoter containing a HNF1
binding site (Fig. 4E).
|
| DISCUSSION |
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It has been previously shown that HNF1
acts as a repressor of HNF4
-mediated activation of transcription (8,9). In this study, we show that HNF4
can serve as a coactivator for HNF1
since HNF4
is able to enhance HNF1
activity in a DNA-binding independent manner. A synergy between HNF1
and HNF4
can be inferred from data obtained in undifferentiated Caco-2 cells on a promoter containing binding sites for these two HNFs. Since mutation of the HNF4
binding site did not affect this synergy, the authors suggested that this effect probably did not involve HNF4
DNA binding (37). In light of our results, these data can now most probably be explained by the ability of HNF4
to directly act as a HNF1
coactivator. Analysis of the physiological role of this HNF4
coactivator function in cell types that endogenously express HNF1
and HNF4
cannot be realized by conventional targeting of HNF4
expression since HNF4
also positively regulates HNF1
expression. Therefore, this concern will first require development of an experimental model that permits to distinguish between HNF4
effects linked to regulation of HNF1
expression on one hand and to regulation of HNF1
transcriptional activity on the other hand (Fig. 5).
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Interplays between two transcription factors in both activation and repression of transcription have already been documented. Indeed, cross-talk between HNF6 and HNF3ß, two other liver-enriched transcription factors, also results in opposite effects on the activities of these proteins (38).
Despite their efficient interaction, HNF4
and HNF1
lacking its activation function (HNF1
-
AD) were unable to cooperate. Such a behaviour is reminiscent of that of CBP and P/CAF with HNF1
(1280) (21). Only the simultaneous overexpression of CBP and P/CAF together with that of the truncated HNF1
could activate transcription (21). This points to a critical role for the HNF1
activation domain, which could be the recruitment of other required coactivators and/or stabilization of the transcriptional complex recruited by HNF1
.
Our results indicate that the HNF4
AF2 is involved in interaction with HNF1
, but also that other regions of the HNF4
LBD are required for full interaction between these proteins. Ktistaki and Talianidis previously stated that the HNF4
AF2 is sufficient for interaction with HNF1
(9). The discrepancy between their conclusion and our results is likely explained by the fact that these authors used deletion of a fragment (residues 337368), which includes not only the AF2 but also part of the large helix H10H11, the integrity of which has meanwhile been shown to be crucial for the protein conformation (32). We observed that two-point mutations in the HNF4
LBD, A223F and E276Q, significantly decreased interaction and cooperation with HNF1
thus demonstrating that the integrity of the HNF4
LBD is required for the synergy with HNF1
.
The similarity of phenotypes exhibited by diabetic patients carrying MODY1 and MODY3 mutations has been ascribed to the mutual control of transcription of HNF1
and HNF4
. The ability of HNF4
to serve as an HNF1
coactivator could provide an additional explanation to the closely related phenotypes of these MODY forms of diabetes. Impairment of interaction and of enhancement of HNF1
transcriptional activity by the HNF4
E276Q mutation may be physiologically relevant since this mutation is correlated with MODY1. Unfortunately, the low transfection efficiency and the presence of large amounts of endogenous HNF4
in pancreatic ß-cells prevented us from analysing the effects of this mutation on the synergy between HNF4
and HNF1
in these cells.
Our results support a model that involves the combined action of HNF4
and the coactivator p300 to achieve the highest rate of transcription mediated by HNF1
. Our results also strongly suggest that HNF4
improves p300 recruitment. The synergy between HNF4
and p300 may be mediated in two ways. The first involves simultaneous interactions of HNF4
and p300 with HNF1
(Fig. 4E). In this case, HNF4
could indirectly improve HNF1
p300 interaction through induction of a HNF1
conformational change. Such a mechanism is reminiscent of that of the CBP-mediated improvement of the interaction between HNF1
and P/CAF (21). Similarly, upon docking to PPAR
, PGC-1 undergoes a conformational change that permits binding of SRC-1 and p300 (39). The second involves docking of p300 by HNF4
, which is bound to HNF1
(Fig. 4E). The recruitment of p300 to the HNF1
HNF4
complex could be mediated by its amino- and/or carboxy-terminal regions, which contain the C/H1 and C/H3 domains, respectively. These domains are known to be involved in proteinprotein interactions (40). The presence of multiple interaction surfaces in HNF1
, HNF4
and p300 most probably facilitates formation of a ternary complex formed with these proteins (Fig. 4E). The remaining synergy between HNF1
and HNF4
after mutations in the HNF4
AF2 (Fig. 3) may be accounted for by the ability of p300 to interact and activate the HNF4
AF1 (33,41) and by the fact that the two above mentioned mechanisms may not be mutually exclusive.
In conclusion, our results highlight a new way by which HNF4
can regulate gene expression. HNF4
not only directly binds to promoters but also, through interaction with other transcription factors already bound to DNA, can facilitate coactivator recruitment to further enhance transcription. Recently, it has been shown that HNF4
also serves as coactivator for Sterol Regulatory Element-Binding protein-2 (42). Furthermore, our results yield insights into a higher complexity of the transcriptional network and on the primordial relationship between HNF1
and HNF4
(Fig. 5). In the regulatory loop between HNF1
and HNF4
, HNF4
can activate both HNF1
expression and transcriptional activity. In contrast to these additive processes, the negative effect of HNF1
on HNF4
transcriptional activity can attenuate the HNF1
-mediated activation of expression. These regulatory feedback mechanisms will have to be taken into account considering that HNF1
and HNF4
are involved in a large diversity of pathways controlling function of multiple organs, notably liver and endocrine pancreas.
| ACKNOWLEDGEMENTS |
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Drs M. Yaniv, A. Abderrahmani, M. Vasseur-Cognet, R. Polakowska, S. Grossman, D. W. Hum and G. Bell are acknowledged for generous gifts of plasmids. We acknowledge Dr P. Sacchetti for helpful discussions and I. Briche for skillful technical assistance.
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