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Nucleic Acids Research, 1983, Vol. 11, No. 19 6699-6708
© 1983


MOLECULAR BIOLOGY

Rat mitochondrial DNA polymorphism: sequence analysis of a hypervariable site for insertions/deletions

Gregory G. Brown* and Lee J. DesRosiers

Department of Biology, McGill University Montreal, Quebec H3A 1B1, Canada

*To whom correspondence should be addressed

Received July 18, 1983. Revised September 6, 1983. Accepted September 6, 1983.

Three closely related variants of rat (Rattus norvegicus) mtDNA have been shown to differ in the number of T residues found in a run of Ts (light strand) which spans the junction between the tRNACys and tRNATyr genes. The number of Ts in the repeat varies from 6 to 8 in these DNAs. Another, less closely related, R. norvegicus variant has a run of 5 Ts at this site and in the related species, Rattus rattus, a run of 4 Ts is found. In R. norvegicus mtDNA runs of 5 As and 5 Gs are found just to the 3' side of the variable T repeat, and it is suggested that the three runs of repeated nucleotides may stabilize heteroduplexes which result from strand slippage and which give rise to the insertions and/or deletions. Among 17 mtDNA clones derived from an individual with the 8T repeat, one clone was found which possessed a 9T repeat. This variant may represent an additional DNA type originally present within the individual.


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