Nucleic Acids Research, Vol 24, Issue 1 189-196, Copyright © 1996 by Oxford University Press
A Bairoch, P Bucher and K Hofmann
The PROSITE database consists of biologically significant patterns and
profiles formulated in such a way that with appropriate computational tools
it can help to determine to which known family of proteins (if any) a new
sequence belongs or which known domain(s) it contains.
ARTICLES
The PROSITE database, its status in 1995
Department of Medical Biochemistry, University of Geneva, Switzerland.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  A. Han, H. J. Kang, Y. Cho, S. Lee, Y. J. Kim, and S. Gong SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences. Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W642 - W644. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Degot, H. Le Hir, F. Alpy, V. Kedinger, I. Stoll, C. Wendling, B. Seraphin, M.-C. Rio, and C. Tomasetto Association of the Breast Cancer Protein MLN51 with the Exon Junction Complex via Its Speckle Localizer and RNA Binding Module J. Biol. Chem., August 6, 2004; 279(32): 33702 - 33715. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 H. Yu, N. M. Luscombe, H. X. Lu, X. Zhu, Y. Xia, J.-D. J. Han, N. Bertin, S. Chung, M. Vidal, and M. Gerstein Annotation Transfer Between Genomes: Protein-Protein Interologs and Protein-DNA Regulogs Genome Res., June 1, 2004; 14(6): 1107 - 1118. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. J. Hektor, H. Kloosterman, and L. Dijkhuizen Identification of a Magnesium-dependent NAD(P)(H)-binding Domain in the Nicotinoprotein Methanol Dehydrogenase from Bacillus methanolicus J. Biol. Chem., November 27, 2002; 277(49): 46966 - 46973. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Fleury, D. Bergonier, X. Berthelot, E. Peterhans, J. Frey, and E. M. Vilei Characterization of P40, a Cytadhesin of Mycoplasma agalactiae Infect. Immun., October 1, 2002; 70(10): 5612 - 5621. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 I. Hakman and P. Oliviusson High expression of putative aquaporin genes in cells with transporting and nutritive functions during seed development in Norway spruce (Picea abies) J. Exp. Bot., April 1, 2002; 53(369): 639 - 649. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 H.-w. Kao and S.-C. Lee Phosphoglucose Isomerases of Hagfish, Zebrafish, Gray Mullet, Toad, and Snake, with Reference to the Evolution of the Genes in Vertebrates Mol. Biol. Evol., April 1, 2002; 19(4): 367 - 374. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Takada, C. G. Wilkerson, K.-i. Wakabayashi, R. Kamiya, and G. B. Witman The Outer Dynein Arm-Docking Complex: Composition and Characterization of a Subunit (Oda1) Necessary for Outer Arm Assembly Mol. Biol. Cell, March 1, 2002; 13(3): 1015 - 1029. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. V. Mavrodi, R. F. Bonsall, S. M. Delaney, M. J. Soule, G. Phillips, and L. S. Thomashow Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas aeruginosa PAO1 J. Bacteriol., November 1, 2001; 183(21): 6454 - 6465. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Fleury, D. Bergonier, X. Berthelot, Y. Schlatter, J. Frey, and E. M. Vilei Characterization and Analysis of a Stable Serotype-Associated Membrane Protein (P30) of Mycoplasma agalactiae J. Clin. Microbiol., August 1, 2001; 39(8): 2814 - 2822. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Murvai, K. Vlahovicek, C. Szepesvari, and S. Pongor Prediction of Protein Functional Domains from Sequences Using Artificial Neural Networks Genome Res., August 1, 2001; 11(8): 1410 - 1417. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Hansen, M. Oehlmann, and P. Schönheit Novel Type of Glucose-6-Phosphate Isomerase in the Hyperthermophilic Archaeon Pyrococcus furiosus J. Bacteriol., June 1, 2001; 183(11): 3428 - 3435. [Abstract] [Full Text]
|
|
|
|
 |
|
 E. M. Vilei and J. Frey Genetic and Biochemical Characterization of Glycerol Uptake in Mycoplasma mycoides subsp. mycoides SC: Its Impact on H2O2 Production and Virulence Clin. Vaccine Immunol., January 1, 2001; 8(1): 85 - 92. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. M. Delaney, D. V. Mavrodi, R. F. Bonsall, and L. S. Thomashow phzO, a Gene for Biosynthesis of 2-Hydroxylated Phenazine Compounds in Pseudomonas aureofaciens 30-84 J. Bacteriol., January 1, 2001; 183(1): 318 - 327. [Abstract] [Full Text]
|
|
|
|
|
|
S. Subramaniam, B. Huang, H. Loh, J. Kwang, H.-M. Tan, K.-L. Chua, and J. Frey Characterization of a Predominant Immunogenic Outer Membrane Protein of Riemerella anatipestifer Clin. Vaccine Immunol., March 1, 2000; 7(2): 168 - 174. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Brûlé, F. Rabahi, R. Faure, J.-F. Beckers, D. W. Silversides, and J. G. Lussier Vacuolar System-Associated Protein-60: A Protein Characterized from Bovine Granulosa and Luteal Cells That Is Associated with Intracellular Vesicles and Related to Human 80K-H and Murine {beta}-Glucosidase II Biol Reprod, March 1, 2000; 62(3): 642 - 654. [Abstract] [Full Text]
|
|
|
|
 |
|
 E. M. Vilei, E.-M. Abdo, J. Nicolet, A. Botelho, R. Gonçalves, and J. Frey Genomic and antigenic differences between the European and African/Australian clusters of Mycoplasma mycoides subsp. mycoides SC Microbiology, February 1, 2000; 146(2): 477 - 486. [Abstract] [Full Text]
|
|
|
|
 |
|
 K. P. O'Connell and M. F. Thomashow Transcriptional Organization and Regulation of a Polycistronic Cold Shock Operon in Sinorhizobium meliloti RM1021 Encoding Homologs of the Escherichia coli Major Cold Shock Gene cspA and Ribosomal Protein Gene rpsU Appl. Envir. Microbiol., January 1, 2000; 66(1): 392 - 400. [Abstract] [Full Text]
|
|
|
|
|
|
V. C. Dodelet, C. Pazzagli, A. H. Zisch, C. A. Hauser, and E. B. Pasquale A Novel Signaling Intermediate, SHEP1, Directly Couples Eph Receptors to R-Ras and Rap1A J. Biol. Chem., November 5, 1999; 274(45): 31941 - 31946. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Valasek, J. Hasek, H. Trachsel, E. M. Imre, and H. Ruis The Saccharomyces cerevisiae HCR1 Gene Encoding a Homologue of the p35 Subunit of Human Translation Initiation Factor 3 (eIF3) Is a High Copy Suppressor of a Temperature-sensitive Mutation in the Rpg1p Subunit of Yeast eIF3 J. Biol. Chem., September 24, 1999; 274(39): 27567 - 27572. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 F. Rabahi, S. Brûlé, J. Sirois, J.-F. Beckers, D. W. Silversides, and J. G. Lussier High Expression of Bovine {alpha} Glutathione S-Transferase (GSTA1, GSTA2) Subunits Is Mainly Associated with Steroidogenically Active Cells and Regulated by Gonadotropins in Bovine Ovarian Follicles Endocrinology, August 1, 1999; 140(8): 3507 - 3517. [Abstract] [Full Text]
|
|
|
|
 |
|
 Y.-J. Sun, C.-C. Chou, W.-S. Chen, R.-T. Wu, M. Meng, and C.-D. Hsiao The crystal structure of a multifunctional protein: Phosphoglucose isomerase/autocrine motility factor/neuroleukin PNAS, May 11, 1999; 96(10): 5412 - 5417. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. E. J. Rasko, J.-L. Battini, R. J. Gottschalk, I. Mazo, and A. D. Miller The RD114/simian type D retrovirus receptor is a neutral amino acid transporter PNAS, March 2, 1999; 96(5): 2129 - 2134. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M.-P. Monnerat, F. Thiaucourt, J. B. Poveda, J. Nicolet, and J. Frey Genetic and Serological Analysis of Lipoprotein LppA in Mycoplasma mycoides subsp. mycoides LC and Mycoplasma mycoides subsp. capri Clin. Vaccine Immunol., March 1, 1999; 6(2): 224 - 230. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. M. Meyers, G. Obrian, W. L. Du, D. Bhatnagar, and G. A. Payne Characterization of aflJ, a Gene Required for Conversion of Pathway Intermediates to Aflatoxin Appl. Envir. Microbiol., October 1, 1998; 64(10): 3713 - 3717. [Abstract] [Full Text]
|
|
|
|
|
|
E. Díaz, A. Ferrández, and J. L. García Characterization of the hca Cluster Encoding the Dioxygenolytic Pathway for Initial Catabolism of 3-Phenylpropionic Acid in Escherichia coli K-12 J. Bacteriol., June 1, 1998; 180(11): 2915 - 2923. [Abstract] [Full Text]
|
|
|
|
 |
|
 J. R. Chamberlain, Y. Lee, W. S. Lane, and D. R. Engelke Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP Genes & Dev., June 1, 1998; 12(11): 1678 - 1690. [Abstract] [Full Text]
|
|
|
|
|
|
S. E. Brenner, C. Chothia, and T. J. P. Hubbard Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships PNAS, May 26, 1998; 95(11): 6073 - 6078. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. V. Mavrodi, V. N. Ksenzenko, R. F. Bonsall, R. J. Cook, A. M. Boronin, and L. S. Thomashow A Seven-Gene Locus for Synthesis of Phenazine-1-Carboxylic Acid by Pseudomonas fluorescens 2-79 J. Bacteriol., May 1, 1998; 180(9): 2541 - 2548. [Abstract] [Full Text]
|
|
|
|
|
|
H. Hayashi, L. De Bellis, K. Yamaguchi, A. Kato, M. Hayashi, and M. Nishimura Molecular Characterization of a Glyoxysomal Long Chain Acyl-CoA Oxidase That Is Synthesized as a Precursor of Higher Molecular Mass in Pumpkin J. Biol. Chem., April 3, 1998; 273(14): 8301 - 8307. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. S. Scott-Craig, Y.-Q. Cheng, F. Cervone, G. De Lorenzo, J. W. Pitkin, and J. D. Walton Targeted Mutants of Cochliobolus carbonum Lacking the Two Major Extracellular Polygalacturonases Appl. Envir. Microbiol., April 1, 1998; 64(4): 1497 - 1503. [Abstract] [Full Text]
|
|
|
|
|
|
T. A. Russo, S. Wenderoth, U. B. Carlino, J. M. Merrick, and A. J. Lesse Identification, Genomic Organization, and Analysis of the Group III Capsular Polysaccharide Genes kpsD, kpsM, kpsT, and kpsE from an Extraintestinal Isolate of Escherichia coli (CP9, O4/K54/H5) J. Bacteriol., January 15, 1998; 180(2): 338 - 349. [Abstract] [Full Text]
|
|
|
|
|
|
K. Nairz and F. Klein mre11S---a yeast mutation that blocks double-strand-break processing and permits nonhomologous synapsis in meiosis Genes & Dev., September 1, 1997; 11(17): 2272 - 2290. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. D. Sherrington, J. L. Scott, B. Jin, D. Simmons, D. J. Dorahy, J. Lloyd, J. H. Brien, R. H. Aebersold, J. Adamson, M. Zuzel, et al. TLiSA1 (PTA1) Activation Antigen Implicated in T Cell Differentiation and Platelet Activation Is a Member of the Immunoglobulin Superfamily Exhibiting Distinctive Regulation of Expression J. Biol. Chem., August 29, 1997; 272(35): 21735 - 21744. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. R. Johnson, W. C. Merrick, W. L. Zoll, and Y. Zhu Identification of cDNA Clones for the Large Subunit of Eukaryotic Translation Initiation Factor 3. COMPARISON OF HOMOLOGUES FROM HUMAN, NICOTIANA TABACUM, CAENORHABDITIS ELEGANS, AND SACCHAROMYCES CEREVISIAE J. Biol. Chem., March 14, 1997; 272(11): 7106 - 7113. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. J. Ewbank, T. M. Barnes, B. Lakowski, M. Lussier, H. Bussey, and S. Hekimi Structural and Functional Conservation of the Caenorhabditis elegans Timing Gene clk-1 Science, February 14, 1997; 275(5302): 980 - 983. [Abstract] [Full Text]
|
|
|
|
|
|
M. Furukawa, Y. Suzuki, M. A. Ghoneim, S. Tachibana, and S. Hirose Cryptic Origin of SPAI, a Plasma Protein with a Transglutaminase Substrate Domain and the WAP Motif, Revealed by in Situ Hybridization and Immunohistochemistry J. Biol. Chem., November 22, 1996; 271(47): 29517 - 29520. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Bessman, D. N. Frick, and S. F. O'Handley The MutT Proteins or ``Nudix'' Hydrolases, a Family of Versatile, Widely Distributed, ``Housecleaning'' Enzymes J. Biol. Chem., October 11, 1996; 271(41): 25059 - 25062. [Full Text] [PDF]
|
|
|
|
|
|
R. Imamura, K. Yamanaka, T. Ogura, S. Hiraga, N. Fujita, A. Ishihama, and H. Niki Identification of the cpdA Gene Encoding Cyclic 3',5'-Adenosine Monophosphate Phosphodiesterase in Escherichia coli J. Biol. Chem., October 11, 1996; 271(41): 25423 - 25429. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R F Smith Perspectives: sequence data base searching in the era of large-scale genomic sequencing. Genome Res., August 1, 1996; 6(8): 653 - 660. [Abstract] [PDF]
|
|
|
|
|
|
T. Barbeyron, G. Michel, P. Potin, B. Henrissat, and B. Kloareg iota -Carrageenases Constitute a Novel Family of Glycoside Hydrolases, Unrelated to That of kappa -Carrageenases J. Biol. Chem., November 3, 2000; 275(45): 35499 - 35505. [Abstract] [Full Text] [PDF]
|
|