Nucleic Acids Research, Vol 25, Issue 1 217-221, Copyright © 1997 by Oxford University Press
A Bairoch, P Bucher and K Hofmann
The PROSITE database consists of biologically significant patterns and
profiles formulated in such a way that with appropriate computational tools
it can help to determine to which known family of protein (if any) a new
sequence belongs, or which known domain(s) it contains.
ARTICLES
The PROSITE database, its status in 1997
Department of Medical Biochemistry, University of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland. bairoch@cmu.unige.ch
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S. Papin, P. Duquesnoy, C. Cazeneuve, J. Pantel, M. Coppey-Moisan, C. Dargemont, and S. Amselem Alternative splicing at the MEFV locus involved in familial Mediterranean fever regulates translocation of the marenostrin/pyrin protein to the nucleus Hum. Mol. Genet., December 1, 2000; 9(20): 3001 - 3009. [Abstract] [Full Text] [PDF]
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S. Takai, S. A. Hines, T. Sekizaki, V. M. Nicholson, D. A. Alperin, M. Osaki, D. Takamatsu, M. Nakamura, K. Suzuki, N. Ogino, et al. DNA Sequence and Comparison of Virulence Plasmids from Rhodococcus equi ATCC 33701 and 103 Infect. Immun., December 1, 2000; 68(12): 6840 - 6847. [Abstract] [Full Text] [PDF]
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P. Nygaard, S. M. Bested, K. A. K. Andersen, and H. H. Saxild Bacillus subtilis guanine deaminase is encoded by the yknA gene and is induced during growth with purines as the nitrogen source Microbiology, December 1, 2000; 146(12): 3061 - 3069. [Abstract] [Full Text] [PDF]
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C. Green, E. Levashina, C. McKimmie, T. Dafforn, J.-M. Reichhart, and D. Gubb The necrotic Gene in Drosophila Corresponds to One of a Cluster of Three Serpin Transcripts Mapping at 43A1.2 Genetics, November 1, 2000; 156(3): 1117 - 1127. [Abstract] [Full Text]
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N. F. W. Saunders, J. J. Hornberg, W. N. M. Reijnders, H. V. Westerhoff, S. de Vries, and R. J. M. van Spanning The NosX and NirX Proteins of Paracoccus denitrificans Are Functional Homologues: Their Role in Maturation of Nitrous Oxide Reductase J. Bacteriol., September 15, 2000; 182(18): 5211 - 5217. [Abstract] [Full Text]
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J. A. Hoffman, J. L. Badger, Y. Zhang, S.-H. Huang, and K. S. Kim Escherichia coli K1 aslA Contributes to Invasion of Brain Microvascular Endothelial Cells In Vitro and In Vivo Infect. Immun., September 1, 2000; 68(9): 5062 - 5067. [Abstract] [Full Text] [PDF]
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H. Mziaut, G. Korza, and J. Ozols The N terminus of microsomal Delta 9 stearoyl-CoA desaturase contains the sequence determinant for its rapid degradation PNAS, August 1, 2000; 97(16): 8883 - 8888. [Abstract] [Full Text] [PDF]
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E. Ekaza, L. Guilloteau, J. Teyssier, J.-P. Liautard, and S. Köhler Functional analysis of the ClpATPase ClpA of Brucella suis, and persistence of a knockout mutant in BALB/c mice Microbiology, July 1, 2000; 146(7): 1605 - 1616. [Abstract] [Full Text]
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K. D. James, M. A. Hughes, and P. A. Williams Cloning and Expression of ntnD, Encoding a Novel NAD(P)+-Independent 4-Nitrobenzyl Alcohol Dehydrogenase from Pseudomonas sp. Strain TW3 J. Bacteriol., June 1, 2000; 182(11): 3136 - 3141. [Abstract] [Full Text]
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V. N. Guyon, J. D. Astwood, E. C. Garner, A. K. Dunker, and L. P. Taylor Isolation and Characterization of cDNAs Expressed in the Early Stages of Flavonol-Induced Pollen Germination in Petunia Plant Physiology, June 1, 2000; 123(2): 699 - 710. [Abstract] [Full Text]
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B. E. Froman, P. C. Edwards, A. G. Bursch, and K. Dehesh ACX3, a Novel Medium-Chain Acyl-Coenzyme A Oxidase from Arabidopsis Plant Physiology, June 1, 2000; 123(2): 733 - 742. [Abstract] [Full Text]
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E. Perez-Rueda and J. Collado-Vides The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12 Nucleic Acids Res., April 15, 2000; 28(8): 1838 - 1847. [Abstract] [Full Text] [PDF]
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S. L. Dunstan, G. B. Sala-Newby, A. B. Fajardo, K. M. Taylor, and A. K. Campbell Cloning and Expression of the Bioluminescent Photoprotein Pholasin from the Bivalve Mollusc Pholas dactylus J. Biol. Chem., March 24, 2000; 275(13): 9403 - 9409. [Abstract] [Full Text] [PDF]
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M. C. Costanzo, N. Bonnefoy, E. H. Williams, G. D. Clark-Walker, and T. D. Fox Highly Diverged Homologs of Saccharomyces cerevisiae Mitochondrial mRNA-Specific Translational Activators Have Orthologous Functions in Other Budding Yeasts Genetics, March 1, 2000; 154(3): 999 - 1012. [Abstract] [Full Text]
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J. J. Vidmar, D. Zhuo, M. Y. Siddiqi, and A. D.M. Glass Isolation and Characterization of HvNRT2.3 and HvNRT2.4, cDNAs Encoding High-Affinity Nitrate Transporters from Roots of Barley Plant Physiology, March 1, 2000; 122(3): 783 - 792. [Abstract] [Full Text] [PDF]
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M. Yvon, E. Chambellon, A. Bolotin, and F. Roudot-Algaron Characterization and Role of the Branched-Chain Aminotransferase (BcaT) Isolated from Lactococcus lactis subsp. cremoris NCDO 763 Appl. Envir. Microbiol., February 1, 2000; 66(2): 571 - 577. [Abstract] [Full Text]
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S. Ceschini, G. Lupidi, M. Coletta, C. L. Pon, E. Fioretti, and M. Angeletti Multimeric Self-assembly Equilibria Involving the Histone-like Protein H-NS. A THERMODYNAMIC STUDY J. Biol. Chem., January 14, 2000; 275(2): 729 - 734. [Abstract] [Full Text] [PDF]
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E. Fernandez-Salas, M. Sagar, C. Cheng, S. H. Yuspa, and W. C. Weinberg p53 and Tumor Necrosis Factor alpha Regulate the Expression of a Mitochondrial Chloride Channel Protein J. Biol. Chem., December 17, 1999; 274(51): 36488 - 36497. [Abstract] [Full Text] [PDF]
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Z. A. Gilakjan and A. M. Kropinski Cloning and Analysis of the Capsid Morphogenesis Genes of Pseudomonas aeruginosa Bacteriophage D3: Another Example of Protein Chain Mail? J. Bacteriol., December 1, 1999; 181(23): 7221 - 7227. [Abstract] [Full Text]
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B. Esberg, H.-C. E. Leung, H.-C. T. Tsui, G. R. Björk, and M. E. Winkler Identification of the miaB Gene, Involved in Methylthiolation of Isopentenylated A37 Derivatives in the tRNA of Salmonella typhimurium and Escherichia coli J. Bacteriol., December 1, 1999; 181(23): 7256 - 7265. [Abstract] [Full Text]
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W. F. J. IJkel, E. A. van Strien, J. G. M. Heldens, R. Broer, D. Zuidema, R. W. Goldbach, and J. M. Vlak Sequence and organization of the Spodoptera exigua multicapsid nucleopolyhedrovirus genome J. Gen. Virol., December 1, 1999; 80(12): 3289 - 3304. [Abstract] [Full Text]
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N. S. Lurain, K. S. Kapell, D. D. Huang, J. A. Short, J. Paintsil, E. Winkfield, C. A. Benedict, C. F. Ware, and J. W. Bremer Human Cytomegalovirus UL144 Open Reading Frame: Sequence Hypervariability in Low-Passage Clinical Isolates J. Virol., December 1, 1999; 73(12): 10040 - 10050. [Abstract] [Full Text]
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R. Rabus, D. L. Jack, D. J. Kelly, and M. H. Saier Jr TRAP transporters: an ancient family of extracytoplasmic solute- receptor-dependent secondary active transporters Microbiology, December 1, 1999; 145(12): 3431 - 3445. [Abstract] [Full Text] [PDF]
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