Nucleic Acids Research, Vol 25, Issue 1 278-282, Copyright © 1997 by Oxford University Press
JE Hansen, O Lund, K Rapacki and S Brunak
O-GLYCBASE is an updated database of information on glycoproteins and their
O-linked glycosylation sites. Entries are compiled and revised from the
literature, and from the SWISS-PROT database. Entries include information
about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is
now fully cross-referenced to the SWISS-PROT, PIR, PROSITE, PDB, EMBL,
HSSP, LISTA and MIM databases. Compared with version 1.0 the number of
entries have increased by 34%. Revision of the O-glycan assignment was
performed on 20% of the entries. Sequence logos displaying the acceptor
specificity patterns for the GalNAc, mannose and GlcNAc transferases are
shown. The O-GLYCBASE database is available through WWW or by anonymous
FTP.
ARTICLES
O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins
Center for Biological Sequence Analysis, The Technical University of Denmark, Building 206, DK-2800 Lyngby, Denmark. janhan@cbs.dtu.dk
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