Nucleic Acids Research, Vol 26, Issue 1 148-153, Copyright © 1998 by Oxford University Press
M Sprinzl, C Horn, M Brown, A Ioudovitch and S Steinberg
Sequences of 3279 sequences of tRNA genes and tRNAs published up to
December 1996 are included in the compilation. Alignment of the sequences,
which is most compatible with the tRNA phylogeny and known
three-dimensional structures of tRNA, is used. Sequences and references are
available under http://www.uni-bayreuth. de/departments/biochemie/trna/
ARTICLES
Compilation of tRNA sequences and sequences of tRNA genes
Laboratorium fur Biochemie, Universitat Bayreuth, 95440 Bayreuth, Germany. sprinzl@uni-bayreuth.de
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|
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R. KNIGHT, A. BIRMINGHAM, and M. YARUS BayesFold: Rational 2{degrees} folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences RNA, September 1, 2004; 10(9): 1323 - 1336. [Abstract] [Full Text] [PDF]
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J. Armengaud, J. Urbonavicius, B. Fernandez, G. Chaussinand, J. M. Bujnicki, and H. Grosjean N2-Methylation of Guanosine at Position 10 in tRNA Is Catalyzed by a THUMP Domain-containing, S-Adenosylmethionine-dependent Methyltransferase, Conserved in Archaea and Eukaryota J. Biol. Chem., August 27, 2004; 279(35): 37142 - 37152. [Abstract] [Full Text] [PDF]
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L. Randau, S. Schauer, A. Ambrogelly, J. C. Salazar, J. Moser, S.-i. Sekine, S. Yokoyama, D. Soll, and D. Jahn tRNA Recognition by Glutamyl-tRNA Reductase J. Biol. Chem., August 13, 2004; 279(33): 34931 - 34937. [Abstract] [Full Text] [PDF]
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D. H. MATHEWS Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization RNA, August 1, 2004; 10(8): 1178 - 1190. [Abstract] [Full Text] [PDF]
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 G. K. Arhin, S. Shen, H. Irmer, E. Ullu, and C. Tschudi Role of a 300-Kilodalton Nuclear Complex in the Maturation of Trypanosoma brucei Initiator Methionyl-tRNA Eukaryot. Cell, August 1, 2004; 3(4): 893 - 899. [Abstract] [Full Text] [PDF]
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