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Nucleic Acids Research, Vol 26, Issue 1 205-213, Copyright © 1998 by Oxford University Press


ARTICLES

IARC Database of p53 gene mutations in human tumors and cell lines: updated compilation, revised formats and new visualisation tools

P Hainaut, T Hernandez, A Robinson, P Rodriguez-Tome, T Flores, M Hollstein, CC Harris and R Montesano
International Agency for Research on Cancer, 150 cours Albert-Thomas, 69372 Lyon Cedex 08, France. hainaut@iarc.fr

Since 1989, about 570 different p53 mutations have been identified in more than 8000 human cancers. A database of these mutations was initiated by M. Hollstein and C. C. Harris in 1990. This database originally consisted of a list of somatic point mutations in the p 53 gene of human tumors and cell lines, compiled from the published literature and made available in a standard electronic form. The database is maintained at the International Agency for Research on Cancer (IARC) and updated versions are released twice a year (January and July). The current version (July 1997) contains records on 6800 published mutations and will surpass the 8000 mark in the January 1998 release. The database now contains information on somatic and germline mutations in a new format to facilitate data retrieval. In addition, new tools are constructed to improve data analysis, such as a Mutation Viewer Java applet developed at the European Bioinformatics Institute (EBI) to visualise the location and impact of mutations on p53 protein structure. The database is available in different electronic formats at IARC (http://www.iarc. fr/p53/homepage.htm ) or from the EBI server (http://www.ebi.ac.uk ). The IARC p53 website also provides reports on database analysis and links with other p53 sites as well as with related databases. In this report, we describe the criteria for inclusion of data, the revised format and the new visualisation tools. We also briefly discuss the relevance of p 53 mutations to clinical and biological questions.
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Clin. Cancer Res.Home page
A. Tullo, A. M. D'Erchia, K. Honda, R. R. Mitry, M. D. Kelly, N. A. Habib, C. Saccone, and E. Sbisa
Characterization of p53 Mutations in Colorectal Liver Metastases and Correlation with Clinical Parameters
Clin. Cancer Res., November 1, 1999; 5(11): 3523 - 3528.
[Abstract] [Full Text] [PDF]


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Cancer Res.Home page
Y. Daigo, Y. Furukawa, T. Kawasoe, H. Ishiguro, M. Fujita, S. Sugai, S. Nakamori, G.-J. Liefers, R. A. E. M. Tollenaar, C. J. H. van de Velde, et al.
Absence of Genetic Alteration at Codon 531 of the Human c-src Gene in 479 Advanced Colorectal Cancers from Japanese and Caucasian Patients
Cancer Res., September 1, 1999; 59(17): 4222 - 4224.
[Abstract] [Full Text] [PDF]


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S. Yamamoto, A. Romanenko, M. Wei, C. Masuda, W. Zaparin, W. Vinnichenko, A. Vozianov, C. C. R. Lee, K. Morimura, H. Wanibuchi, et al.
Specific p53 Gene Mutations in Urinary Bladder Epithelium after the Chernobyl Accident
Cancer Res., August 1, 1999; 59(15): 3606 - 3609.
[Abstract] [Full Text] [PDF]


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Cancer Epidemiol. Biomarkers Prev.Home page
M. C. Tammemagi, J. R. McLaughlin, and S. B. Bull
Meta-Analyses of p53 Tumor Suppressor Gene Alterations and Clinicopathological Features in Resected Lung Cancers
Cancer Epidemiol. Biomarkers Prev., July 1, 1999; 8(7): 625 - 634.
[Abstract] [Full Text]


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J. Biol. Chem.Home page
J. D. Kelly, A. Inga, F.-X. Chen, P. Dande, D. Shah, P. Monti, A. Aprile, P. A. Burns, G. Scott, A. Abbondandolo, et al.
Relationship between DNA Methylation and Mutational Patterns Induced by a Sequence Selective Minor Groove Methylating Agent
J. Biol. Chem., June 25, 1999; 274(26): 18327 - 18334.
[Abstract] [Full Text] [PDF]


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Cancer Epidemiol. Biomarkers Prev.Home page
A. Yngveson, C. Williams, A. Hjerpe, J. Lundeberg, P. Söderkvist, and G. Pershagen
p53 Mutations in Lung Cancer Associated with Residential Radon Exposure
Cancer Epidemiol. Biomarkers Prev., May 1, 1999; 8(5): 433 - 438.
[Abstract] [Full Text]


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Genome ResHome page
C. J. Bult, D. M. Krupke, B. J. Tennent, and J. T. Eppig
A Survey of Web Resources for Basic Cancer Genetics Research
Genome Res., May 1, 1999; 9(5): 397 - 408.
[Full Text]


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C. A. Klein, O. Schmidt-Kittler, J. A. Schardt, K. Pantel, M. R. Speicher, and G. Riethmuller
Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells
PNAS, April 13, 1999; 96(8): 4494 - 4499.
[Abstract] [Full Text] [PDF]


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Cancer Epidemiol. Biomarkers Prev.Home page
R. Gealy, L. Zhang, J. M. Siegfried, J. D. Luketich, and P. Keohavong
Comparison of Mutations in the p53 and K-ras Genes in Lung Carcinomas from Smoking and Nonsmoking Women1
Cancer Epidemiol. Biomarkers Prev., April 1, 1999; 8(4): 297 - 302.
[Abstract] [Full Text] [PDF]


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Am. J. Respir. Cell Mol. Bio.Home page
K. Husgafvel-Pursiainen, A. Karjalainen, A. Kannio, S. Anttila, T. Partanen, A. Ojajärvi, and H. Vainio
Lung Cancer and Past Occupational Exposure to Asbestos . Role of p53 and K-ras Mutations
Am. J. Respir. Cell Mol. Biol., April 1, 1999; 20(4): 667 - 674.
[Abstract] [Full Text]


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A. Inga, F.-X. Chen, P. Monti, A. Aprile, P. Campomenosi, P. Menichini, L. Ottaggio, S. Viaggi, A. Abbondandolo, B. Gold, et al.
N-(2-Chloroethyl)-N-nitrosourea Tethered to Lexitropsin Induces Minor Groove Lesions at the p53 cDNA That Are More Cytotoxic than Mutagenic
Cancer Res., February 1, 1999; 59(3): 689 - 695.
[Abstract] [Full Text] [PDF]


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X. Zhou, X. W. Wang, L. Xu, K. Hagiwara, M. Nagashima, R. Wolkowicz, I. Zurer, V. Rotter, and C. C. Harris
COOH-Terminal Domain of p53 Modulates p53-mediated Transcriptional Transactivation, Cell Growth, and Apoptosis
Cancer Res., February 1, 1999; 59(4): 843 - 848.
[Abstract] [Full Text] [PDF]


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I. H. N. Wong, Y. M. Dennis Lo, J. Zhang, C.-T. Liew, M. H. L. Ng, N. Wong, P. B. S. Lai, W. Y. Lau, N. M. Hjelm, and P. J. Johnson
Detection of Aberrant p16 Methylation in the Plasma and Serum of Liver Cancer Patients
Cancer Res., January 1, 1999; 59(1): 71 - 73.
[Abstract] [Full Text] [PDF]


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C. Kuhne and L. Banks
E3-Ubiquitin Ligase/E6-AP Links Multicopy Maintenance Protein 7 to the Ubiquitination Pathway by a Novel Motif, the L2G Box
J. Biol. Chem., December 18, 1998; 273(51): 34302 - 34309.
[Abstract] [Full Text] [PDF]



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