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Nucleic Acids Research, Vol 26, Issue 1 387-389, Copyright © 1998 by Oxford University Press

ARTICLES

O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins

JE Hansen, O Lund, J Nilsson, K Rapacki and S Brunak
Center for Biological Sequence Analysis, The Technical University of Denmark, DK-2800 Lyngby, Denmark. janhan@cbs.dtu.dk

O-GLYCBASE is a revised database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the sequence databases. Entries include information about species, sequence, glycosylation sites and glycan type and is fully cross-referenced. Compared to version 2.0 the number of entries has increased by 20%. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu. dk/databases/OGLYCBASE/
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