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Nucleic Acids Research, Vol 27, Issue 1 293-294, Copyright © 1999 by Oxford University Press

ARTICLES

TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions

ME Dalphin, PA Stockwell, WP Tate and CM Brown
Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand. mdalphin@sanger.otago.ac.nz

TransTerm is a database of mRNA sequences and parameters useful for detecting translational control signals in general. TransTerm-98 has been expanded beyond previous years to include full coding sequences and UTRs, while retaining the original small contexts about the coding sequence start- and stop-codons. The database contains more than 130 000 non-redundant coding sequences with associated untranslated regions (UTRs) from over 450 species. This includes the complete genomes of 12 prokaryotic and one eukaryotic organism. Several coding sequence parameters are available: coding sequence length, Nc, GC3 and, when it is computable, Codon Adaptation Index (CAI). Codon usage tables and summaries of start- and stop-codon contexts are also included. TransTerm-98 has both a relational database form with a WWW interface and a flatfile format, also available by Internet browser. TransTerm is available at: http://biochem.otago.ac.nz:800/Transterm/homepage.h tml
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