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Nucleic Acids Research, 2000, Vol. 28, No. 1 15-18
© 2000 Oxford University Press

GenBank

Dennis A. Benson*, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Barbara A. Rapp and David L. Wheeler

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA

The GenBank® sequence database incorporates publicly available DNA sequences of >55 000 different organisms, primarily through direct submission of sequence data from individual laboratories and large-scale sequencing projects. Most submissions are made using the BankIt (Web) or Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Data exchange with the EMBL Data Library and the DNA Data Bank of Japan helps ensure comprehensive worldwide coverage. GenBank data is accessible through NCBI’s integrated retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping and protein structure information, plus the biomedical literature via PubMed. Sequence similarity searching is provided by the BLAST family of programs. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. NCBI also offers a wide range of WWW retrieval and analysis services based on GenBank data. The GenBank database and related resources are freely accessible via the NCBI home page at http://www.ncbi.nlm.nih.gov

* To whom correspondence should be addressed. Tel: +1 301 496 2475; Fax: +1 301 480 9241; Email: dab@ncbi.nlm.nih.gov


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B. Borstnik and D. Pumpernik
Tandem Repeats in Protein Coding Regions of Primate Genes
Genome Res., June 1, 2002; 12(6): 909 - 915.
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J. Am. Soc. Nephrol.Home page
M. Rantanen, T. Palmen, A. Patari, H. Ahola, S. Lehtonen, E. Astrom, T. Floss, F. Vauti, W. Wurst, P. Ruiz, et al.
Nephrin TRAP Mice Lack Slit Diaphragms and Show Fibrotic Glomeruli and Cystic Tubular Lesions
J. Am. Soc. Nephrol., June 1, 2002; 13(6): 1586 - 1594.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
V. M. Brown, A. Ossadtchi, A. H. Khan, S. Yee, G. Lacan, W. P. Melega, S. R. Cherry, R. M. Leahy, and D. J. Smith
Multiplex Three-Dimensional Brain Gene Expression Mapping in a Mouse Model of Parkinson's Disease
Genome Res., June 1, 2002; 12(6): 868 - 884.
[Abstract] [Full Text] [PDF]


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Mol Biol EvolHome page
J. E. Steinbachs and K. E. Holsinger
S-RNase-mediated Gametophytic Self-Incompatibility is Ancestral in Eudicots
Mol. Biol. Evol., June 1, 2002; 19(6): 825 - 829.
[Abstract] [Full Text] [PDF]


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Appl. Environ. Microbiol.Home page
M. I. Van Dyke and A. J. McCarthy
Molecular Biological Detection and Characterization of Clostridium Populations in Municipal Landfill Sites
Appl. Envir. Microbiol., April 1, 2002; 68(4): 2049 - 2053.
[Abstract] [Full Text] [PDF]


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Hum Mol GenetHome page
J. M. Young, C. Friedman, E. M. Williams, J. A. Ross, L. Tonnes-Priddy, and B. J. Trask
Different evolutionary processes shaped the mouse and human olfactory receptor gene families
Hum. Mol. Genet., March 1, 2002; 11(5): 535 - 546.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
D. W.A. Buchan, A. J. Shepherd, D. Lee, F. M.G. Pearl, S. C.G. Rison, J. M. Thornton, and C. A. Orengo
Gene3D: Structural Assignment for Whole Genes and Genomes Using the CATH Domain Structure Database
Genome Res., March 1, 2002; 12(3): 503 - 514.
[Abstract] [Full Text] [PDF]


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Appl. Environ. Microbiol.Home page
E. R. Hendrickson, J. A. Payne, R. M. Young, M. G. Starr, M. P. Perry, S. Fahnestock, D. E. Ellis, and R. C. Ebersole
Molecular Analysis of Dehalococcoides 16S Ribosomal DNA from Chloroethene-Contaminated Sites throughout North America and Europe
Appl. Envir. Microbiol., February 1, 2002; 68(2): 485 - 495.
[Abstract] [Full Text] [PDF]


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Hum Mol GenetHome page
F. Clark and T. A. Thanaraj
Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human
Hum. Mol. Genet., February 1, 2002; 11(4): 451 - 464.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
V. M. Brown, A. Ossadtchi, A. H. Khan, S. R. Cherry, R. M. Leahy, and D. J. Smith
High-Throughput Imaging of Brain Gene Expression
Genome Res., February 1, 2002; 12(2): 244 - 254.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
P. M. Harrison, H. Hegyi, S. Balasubramanian, N. M. Luscombe, P. Bertone, N. Echols, T. Johnson, and M. Gerstein
Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22
Genome Res., February 1, 2002; 12(2): 272 - 280.
[Abstract] [Full Text] [PDF]


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Biol. Bull.Home page
S. M. Carr, H. D. Marshall, K. A. Johnstone, L. M. Pynn, and G. B. Stenson
How To Tell a Sea Monster: Molecular Discrimination of Large Marine Animals of the North Atlantic
Biol. Bull., February 1, 2002; 202(1): 1 - 5.
[Abstract] [Full Text] [PDF]


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Cancer Res.Home page
P. Platzer, M. B. Upender, K. Wilson, J. Willis, J. Lutterbaugh, A. Nosrati, J. K. V. Willson, D. Mack, T. Ried, and S. Markowitz
Silence of Chromosomal Amplifications in Colon Cancer
Cancer Res., February 1, 2002; 62(4): 1134 - 1138.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
D. L. Wheeler, D. M. Church, A. E. Lash, D. D. Leipe, T. L. Madden, J. U. Pontius, G. D. Schuler, L. M. Schriml, T. A. Tatusova, L. Wagner, et al.
Database resources of the National Center for Biotechnology Information: 2002 update
Nucleic Acids Res., January 1, 2002; 30(1): 13 - 16.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, B. A. Rapp, and D. L. Wheeler
GenBank
Nucleic Acids Res., January 1, 2002; 30(1): 17 - 20.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
G. Stoesser, W. Baker, A. van den Broek, E. Camon, M. Garcia-Pastor, C. Kanz, T. Kulikova, R. Leinonen, Q. Lin, V. Lombard, et al.
The EMBL Nucleotide Sequence Database
Nucleic Acids Res., January 1, 2002; 30(1): 21 - 26.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
M. W. Friedrich
Phylogenetic Analysis Reveals Multiple Lateral Transfers of Adenosine-5'-Phosphosulfate Reductase Genes among Sulfate-Reducing Microorganisms
J. Bacteriol., January 1, 2002; 184(1): 278 - 289.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
M. Hirakawa
HOWDY: an integrated database system for human genome research
Nucleic Acids Res., January 1, 2002; 30(1): 152 - 157.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
M. Hirakawa, T. Tanaka, Y. Hashimoto, M. Kuroda, T. Takagi, and Y. Nakamura
JSNP: a database of common gene variations in the Japanese population
Nucleic Acids Res., January 1, 2002; 30(1): 158 - 162.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
C. Schonbach, J. L. Y. Koh, D. R. Flower, L. Wong, and V. Brusic
FIMM, a database of functional molecular immunology: update 2002
Nucleic Acids Res., January 1, 2002; 30(1): 226 - 229.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
J. Westbrook, Z. Feng, S. Jain, T. N. Bhat, N. Thanki, V. Ravichandran, G. L. Gilliland, W. Bluhm, H. Weissig, D. S. Greer, et al.
The Protein Data Bank: unifying the archive
Nucleic Acids Res., January 1, 2002; 30(1): 245 - 248.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
U. Pieper, N. Eswar, A. C. Stuart, V. A. Ilyin, and A. Sali
MODBASE, a database of annotated comparative protein structure models
Nucleic Acids Res., January 1, 2002; 30(1): 255 - 259.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
N. D. Rawlings, E. O'Brien, and A. J. Barrett
MEROPS: the protease database
Nucleic Acids Res., January 1, 2002; 30(1): 343 - 346.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
D. Harmsen, J. Rothganger, M. Frosch, and J. Albert
RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database
Nucleic Acids Res., January 1, 2002; 30(1): 416 - 417.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
D. Georgellis, O. Kwon, E. C. C. Lin, S. M. Wong, and B. J. Akerley
Redox Signal Transduction by the ArcB Sensor Kinase of Haemophilus influenzae Lacking the PAS Domain
J. Bacteriol., December 15, 2001; 183(24): 7206 - 7212.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
E. M. Panina, A. A. Mironov, and M. S. Gelfand
Comparative analysis of FUR regulons in gamma-proteobacteria
Nucleic Acids Res., December 15, 2001; 29(24): 5195 - 5206.
[Abstract] [Full Text] [PDF]



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