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Nucleic Acids Research, 2000, Vol. 28, No. 1 153-154
© 2000 Oxford University Press

Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences

Cecilia Lanave*, Sabino Liuni, Flavio Licciulli1 and Marcella Attimonelli2

Centro di Studio sui Mitocondri e Metabolismo Energetico CNR, Via Amendola 165/A, 70126 Bari, Italy, 1Area di Ricerca di Bari, CNR, Via Amendola 166/5, 70126 Bari, Italy and 2Dipartimento di Biochimica e Biologia Molecolare, Università di Bari, Via Orabona 4, 70126 Bari, Italy

The AMmtDB database (http://bio-www.ba.cnr.it:8000/srs6/ ) has been updated by collecting the multi-aligned sequences of Chordata mitochondrial genes coding for proteins and tRNAs. The genes coding for proteins are multi-aligned based on the translated sequences and both the nucleotide and amino acid multi-alignments are provided. AMmtDB data selected through SRS can be viewed and managed using GeneDoc or other programs for the management of multi-aligned data depending on the user’s operative system. The multiple alignments have been produced with CLUSTALW and PILEUP programs and then carefully optimized manually.

* To whom correspondence should be addressed. Tel: +39 080 548 2180; Fax: +39 080 548 4467; Email: cecilia@area.ba.cnr.it


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