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Nucleic Acids Research, 2001, Vol. 29, No. 1 199-201
© 2001 Oxford University Press

The RESID Database of protein structure modifications and the NRL-3D Sequence–Structure Database

John S. Garavelli*, Zhenglin Hou, Nagarajan Pattabiraman1 and Robert M. Stephens1

National Biomedical Research Foundation, Protein Information Resource, Washington, DC 20007, USA and 1Advanced Biomedical Computing Center, SAIC, National Cancer Institute–Frederick, Frederick, MD 21702, USA

The RESID Database is a comprehensive collection of annotations and structures for protein post-translational modifications including N-terminal, C-terminal and peptide chain cross-link modifications. The RESID Database includes systematic and frequently observed alternate names, Chemical Abstracts Service registry numbers, atomic formulas and weights, enzyme activities, taxonomic range, keywords, literature citations with database cross-references, structural diagrams and molecular models. The NRL-3D Sequence–Structure Database is derived from the three-dimensional structure of proteins deposited with the Research Collaboratory for Structural Bioinformatics Protein Data Bank. The NRL-3D Database includes standardized and frequently observed alternate names, sources, keywords, literature citations, experimental conditions and searchable sequences from model coordinates. These databases are freely accessible through the National Cancer Institute–Frederick Advanced Biomedical Computing Center at these web sites: http://www.ncifcrf.gov/RESID, http://www.ncifcrf.gov/NRL-3D ; or at these National Biomedical Research Foundation Protein Information Resource web sites: http://pir.georgetown.edu/pirwww/dbinfo/resid.html, http://pir.georgetown.edu/pirwww/dbinfo/nrl3d.html

* To whom correspondence should be addressed. Tel: +1 202 687 2121; Fax: +1 202 687 1662; Email: jsgaravelli{at}earthlink.net


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