Nucleic Acids Research, 2001, Vol. 29, No. 1 239-241
© 2001 Oxford University Press
DIP: The Database of Interacting Proteins: 2001 update
UCLA-DOE Laboratory of Structural Biology and Molecular Medicine, Molecular Biology Institute, PO Box 951570, UCLA, Los Angeles, CA 90095-1570, USA and 1Protein Pathways, 1034 Gayley Avenue, Los Angeles CA 90024, USA
The Database of Interacting Proteins (DIP; http://dip.doe-mbi.ucla.edu) is a database that documents experimentally determined proteinprotein interactions. Since January 2000 the number of proteinprotein interactions in DIP has nearly tripled to 3472 and the number of proteins to 2659. New interactive tools have been developed to aid in the visualization, navigation and study of networks of protein interactions.
* To whom correspondence should be addressed. Tel: +1 310 825 3754; Fax: +1 310 206 3914; Email: david@mbi.ucla.edu
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
K. D. Bromberg, A. Ma'ayan, S. R. Neves, and R. Iyengar Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth Science, May 16, 2008; 320(5878): 903 - 909. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Presser, M. B. Elowitz, M. Kellis, and R. Kishony The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication PNAS, January 22, 2008; 105(3): 950 - 954. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. R. Jefferson, T. P. Walsh, T. J. Roberts, and G. J. Barton SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions Nucleic Acids Res., January 12, 2007; 35(suppl_1): D580 - D589. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Massjouni, C. G. Rivera, and T. M. Murali VIRGO: computational prediction of gene functions. Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W340 - W344. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Birkland and G. Yona BIOZON: a hub of heterogeneous biological data Nucleic Acids Res., January 1, 2006; 34(suppl_1): D235 - D242. [Abstract] [Full Text] [PDF] |
||||
![]() |
X.-W. Chen and M. Liu Prediction of protein-protein interactions using random decision forest framework Bioinformatics, December 15, 2005; 21(24): 4394 - 4400. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Kolker, K. S. Makarova, S. Shabalina, A. F. Picone, S. Purvine, T. Holzman, T. Cherny, D. Armbruster, R. S. Munson Jr, G. Kolesov, et al. Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae Nucleic Acids Res., April 30, 2004; 32(8): 2353 - 2361. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Yeger-Lotem, S. Sattath, N. Kashtan, S. Itzkovitz, R. Milo, R. Y. Pinter, U. Alon, and H. Margalit Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction PNAS, April 20, 2004; 101(16): 5934 - 5939. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Schlitt, K. Palin, J. Rung, S. Dietmann, M. Lappe, E. Ukkonen, and A. Brazma From Gene Networks to Gene Function Genome Res., December 1, 2003; 13(12): 2568 - 2576. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Yeger-Lotem and H. Margalit Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation Nucleic Acids Res., October 15, 2003; 31(20): 6053 - 6061. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. C. Obenauer, L. C. Cantley, and M. B. Yaffe Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs Nucleic Acids Res., July 1, 2003; 31(13): 3635 - 3641. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Nagashima, D. G. Silva, N. Petrovsky, L. A. Socha, H. Suzuki, R. Saito, T. Kasukawa, I. V. Kurochkin, A. Konagaya, and C. Schonbach Inferring Higher Functional Information for RIKEN Mouse Full-Length cDNA Clones With FACTS Genome Res., June 1, 2003; 13(6): 1520 - 1533. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. E. Neet and J. C. Lee Biophysical Characterization of Proteins in the Post-genomic Era of Proteomics Mol. Cell. Proteomics, June 1, 2002; 1(6): 415 - 420. [Abstract] [Full Text] [PDF] |
||||
![]() |
X. J. Duan, I. Xenarios, and D. Eisenberg Describing Biological Protein Interactions in Terms of Protein States and State Transitions : THE LiveDIP DATABASE Mol. Cell. Proteomics, February 1, 2002; 1(2): 104 - 116. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. Xenarios, L. Salwinski, X. J. Duan, P. Higney, S.-M. Kim, and D. Eisenberg DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions Nucleic Acids Res., January 1, 2002; 30(1): 303 - 305. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Ashman, M. F. Moran, F. Sicheri, T. Pawson, and M. Tyers Cell Signalling - The Proteomics of It All Sci. Signal., October 9, 2001; 2001(103): pe33 - pe33. [Abstract] [Full Text] [PDF] |
||||






