Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (206K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (92)
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Roberts, R. J.
Right arrow Articles by Macelis, D.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Roberts, R. J.
Right arrow Articles by Macelis, D.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2001, Vol. 29, No. 1 268-269
© 2001 Oxford University Press

REBASE—restriction enzymes and methylases

Richard J. Roberts* and Dana Macelis

New England BioLabs, 32 Tozer Road, Beverly, MA 01915, USA

REBASE contains comprehensive information about restriction enzymes, DNA methylases and related proteins such as nicking enzymes, specificity subunits and control proteins. It contains published and unpublished references, recognition and cleavage sites, isoschizomers, commercial availability, methy­lation sensitivity, crystal data and sequence data. Homing endonucleases are also included. Most recently, extensive information about the methy­lation sensitivity of restriction enzymes has been added and a new feature contains complete analyses of the putative restriction systems in the sequenced bacterial and archaeal genomes. The data is distributed via email, ftp (ftp.neb.com) and the Web (http://rebase.neb.com).

* To whom correspondence should be addressed. Tel: +1 978 927 3382; Fax: +1 978 921 1527; Email: roberts{at}neb.com


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
Antimicrob. Agents Chemother.Home page
Y.-T. Chen, H.-Y. Shu, L.-H. Li, T.-L. Liao, K.-M. Wu, Y.-R. Shiau, J.-J. Yan, I.-J. Su, S.-F. Tsai, and T.-L. Lauderdale
Complete Nucleotide Sequence of pK245, a 98-Kilobase Plasmid Conferring Quinolone Resistance and Extended-Spectrum-{beta}-Lactamase Activity in a Clinical Klebsiella pneumoniae Isolate
Antimicrob. Agents Chemother., November 1, 2006; 50(11): 3861 - 3866.
[Abstract] [Full Text] [PDF]


Home page
J PLANKTON RESHome page
S. Wang, Z. Bao, L. Zhang, N. Li, A. Zhan, W. Guo, X. Wang, and J. Hu
A new strategy for species identification of planktonic larvae: PCR-RFLP analysis of the internal transcribed spacer region of ribosomal DNA detected by agarose gel electrophoresis or DHPLC
J. Plankton Res., April 1, 2006; 28(4): 375 - 384.
[Abstract] [Full Text] [PDF]


Home page
MicrobiologyHome page
P. Zaleski, M. Wojciechowski, and A. Piekarowicz
The role of Dam methylation in phase variation of Haemophilus influenzae genes involved in defence against phage infection
Microbiology, October 1, 2005; 151(10): 3361 - 3369.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
M. Qi, K. E. Nelson, S. C. Daugherty, W. C. Nelson, I. R. Hance, M. Morrison, and C. W. Forsberg
Novel Molecular Features of the Fibrolytic Intestinal Bacterium Fibrobacter intestinalis Not Shared with Fibrobacter succinogenes as Determined by Suppressive Subtractive Hybridization
J. Bacteriol., June 1, 2005; 187(11): 3739 - 3751.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. Chandrashekaran, U. H. Manjunatha, and V. Nagaraja
KpnI restriction endonuclease and methyltransferase exhibit contrasting mode of sequence recognition
Nucleic Acids Res., June 10, 2004; 32(10): 3148 - 3155.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
K. Hingorani-Varma and J. Bitinaite
Kinetic Analysis of the Coordinated Interaction of SgrAI Restriction Endonuclease with Different DNA Targets
J. Biol. Chem., October 10, 2003; 278(41): 40392 - 40399.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
E. Protozanova, V. V. Demidov, P. E. Nielsen, and M. D. Frank-Kamenetskii
Pseudocomplementary PNAs as selective modifiers of protein activity on duplex DNA: the case of type IIs restriction enzymes
Nucleic Acids Res., July 15, 2003; 31(14): 3929 - 3935.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
N. E. Taylor and E. A. Greene
PARSESNP: a tool for the analysis of nucleotide polymorphisms
Nucleic Acids Res., July 1, 2003; 31(13): 3808 - 3811.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
I. Mruk and T. Kaczorowski
Genetic Organization and Molecular Analysis of the EcoVIII Restriction-Modification System of Escherichia coli E1585-68 and Its Comparison with Isospecific Homologs
Appl. Envir. Microbiol., May 1, 2003; 69(5): 2638 - 2650.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
K. Kita, H. Kawakami, and H. Tanaka
Evidence for Horizontal Transfer of the EcoT38I Restriction- Modification Gene to Chromosomal DNA by the P2 Phage and Diversity of Defective P2 Prophages in Escherichiacoli TH38 Strains
J. Bacteriol., April 1, 2003; 185(7): 2296 - 2305.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
J. K. A. Kasarjian, M. Iida, and J. Ryu
New restriction enzymes discovered from Escherichia coli clinical strains using a plasmid transformation method
Nucleic Acids Res., March 1, 2003; 31(5): e22 - e22.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
R. J. Roberts, T. Vincze, J. Posfai, and D. Macelis
REBASE: restriction enzymes and methyltransferases
Nucleic Acids Res., January 1, 2003; 31(1): 418 - 420.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
N. Takahashi, Y. Naito, N. Handa, and I. Kobayashi
A DNA Methyltransferase Can Protect the Genome from Postdisturbance Attack by a Restriction-Modification Gene Complex
J. Bacteriol., November 15, 2002; 184(22): 6100 - 6108.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. Gaigalas, Z. Maneliene, R. Kazlauskiene, M. Petrusyte, and A. Janulaitis
PfoI, a unique type II restriction endonuclease that recognises the sequence 5'-T{downarrow}CCNGGA-3'
Nucleic Acids Res., October 1, 2002; 30(19): e98 - e98.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
H. M. Cohen, D. S. Tawfik, and A. D. Griffiths
Promiscuous methylation of non-canonical DNA sites by HaeIII methyltransferase
Nucleic Acids Res., September 1, 2002; 30(17): 3880 - 3885.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
E. Moncke-Buchner, S. Reich, M. Mucke, M. Reuter, W. Messer, E. E. Wanker, and D. H. Kruger
Counting CAG repeats in the Huntington's disease gene by restriction endonuclease EcoP15I cleavage
Nucleic Acids Res., August 15, 2002; 30(16): e83 - e83.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
K. Kita, J. Tsuda, and S.-y. Nakai
C.EcoO109I, a regulatory protein for production of EcoO109I restriction endonuclease, specifically binds to and bends DNA upstream of its translational start site
Nucleic Acids Res., August 15, 2002; 30(16): 3558 - 3565.
[Abstract] [Full Text] [PDF]


Home page
Plant Physiol.Home page
A. Madlung, R. W. Masuelli, B. Watson, S. H. Reynolds, J. Davison, and L. Comai
Remodeling of DNA Methylation and Phenotypic and Transcriptional Changes in Synthetic Arabidopsis Allotetraploids
Plant Physiology, June 1, 2002; 129(2): 733 - 746.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
V. Pingoud, E. Kubareva, G. Stengel, P. Friedhoff, J. M. Bujnicki, C. Urbanke, A. Sudina, and A. Pingoud
Evolutionary Relationship between Different Subgroups of Restriction Endonucleases
J. Biol. Chem., April 12, 2002; 277(16): 14306 - 14314.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Zylicz-Stachula, R. I. Harasimowicz-Slowinska, I. Sobolewski, and P. M. Skowron
TspGWI, a thermophilic class-IIS restriction endonuclease from Thermus sp., recognizes novel asymmetric sequence 5'-ACGGA(N11/9)-3'
Nucleic Acids Res., April 1, 2002; 30(7): e33 - e33.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
G. Vilkaitis, A. Lubys, E. Merkiene, A. Timinskas, A. Janulaitis, and S. Klimasauskas
Circular permutation of DNA cytosine-N4 methyltransferases: in vivo coexistence in the BcnI system and in vitro probing by hybrid formation
Nucleic Acids Res., April 1, 2002; 30(7): 1547 - 1557.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
A. J. Bath, S. E. Milsom, N. A. Gormley, and S. E. Halford
Many Type IIs Restriction Endonucleases Interact with Two Recognition Sites before Cleaving DNA
J. Biol. Chem., February 1, 2002; 277(6): 4024 - 4033.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
N. A. Gormley, A. L. Hillberg, and S. E. Halford
The Type IIs Restriction Endonuclease BspMI Is a Tetramer That Acts Concertedly at Two Copies of an Asymmetric DNA Sequence
J. Biol. Chem., February 1, 2002; 277(6): 4034 - 4041.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Kesminiene, Z. Maneliene, J. Vitkute, M. Petrusyte, and A. Janulaitis
FspAI, a unique type II restriction endonuclease that recognizes the octanucleotide sequence 5'-RTGC{downarrow}GCAY-3'
Nucleic Acids Res., December 15, 2001; 29(24): e120 - e120.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
Y. Xu, K. D. Lunnen, and H. Kong
Engineering a nicking endonuclease N.AlwI by domain swapping
PNAS, October 25, 2001; (2001) 241215698.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. J. B. Titheradge, J. King, J. Ryu, and N. E. Murray
Families of restriction enzymes: an analysis prompted by molecular and genetic data for type ID restriction and modification systems
Nucleic Acids Res., October 15, 2001; 29(20): 4195 - 4205.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
T. Sekizaki, M. Osaki, D. Takamatsu, and Y. Shimoji
Distribution of the SsuDAT1I Restriction-Modification System among Different Serotypes of Streptococcus suis
J. Bacteriol., September 15, 2001; 183(18): 5436 - 5440.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Kiss, G. Posfai, G. Zsurka, T. Rasko, and P. Venetianer
Role of DNA minor groove interactions in substrate recognition by the M.SinI and M.EcoRII DNA (cytosine-5) methyltransferases
Nucleic Acids Res., August 1, 2001; 29(15): 3188 - 3194.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. A. Williams and S. E. Halford
SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition site
Nucleic Acids Res., April 1, 2001; 29(7): 1476 - 1483.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
M. Soundararajan, Z. Chang, R. D. Morgan, P. Heslop, and B. A. Connolly
DNA Binding and Recognition by the IIs Restriction Endonuclease MboII
J. Biol. Chem., January 4, 2002; 277(2): 887 - 895.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
Y. Xu, K. D. Lunnen, and H. Kong
Engineering a nicking endonuclease N.AlwI by domain swapping
PNAS, November 6, 2001; 98(23): 12990 - 12995.
[Abstract] [Full Text] [PDF]



Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.