Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (290K) Freely available
Right arrow Supplementary Data
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (74)
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Ware, D.
Right arrow Articles by Stein, L.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Ware, D.
Right arrow Articles by Stein, L.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2002, Vol. 30, No. 1 103-105
© 2002 Oxford University Press

Gramene: a resource for comparative grass genomics

Doreen Ware, Pankaj Jaiswal1, Junjian Ni1, Xiaokang Pan, Kuan Chang, Kenneth Clark, Leonid Teytelman, Steve Schmidt, Wei Zhao, Samuel Cartinhour2, Susan McCouch1 and Lincoln Stein*

Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA, 1Department of Plant Breeding, Cornell University, Ithaca NY 14853-1901, USA and 2USDA–ARS Center for Agricultural Bioinformatics, 626 Rhodes Hall, Cornell Theory Center, Ithaca, NY 14853, USA

Gramene (http://www.gramene.org) is a comparative genome mapping database for grasses and a community resource for rice. Rice, in addition to being an economically important crop, is also a model monocot for understanding other agronomically important grass genomes. Gramene replaces the existing AceDB database ‘RiceGenes’ with a relational database based on Oracle. Gramene provides curated and integrative information about maps, sequence, genes, genetic markers, mutants, QTLs, controlled vocabularies and publications. Its aims are to use the rice genetic, physical and sequence maps as fundamental organizing units, to provide a common denominator for moving from one crop grass to another and is to serve as a portal for interconnecting with other web-based crop grass resources. This paper describes the initial steps we have taken towards realizing these goals.

* To whom correspondence should be addressed. Tel: +1 516 367 8380; Fax: +1 516 367 8389; Email: lstein{at}cshl.org


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Phil Trans R Soc BHome page
B. C.Y Collard and D. J Mackill
Marker-assisted selection: an approach for precision plant breeding in the twenty-first century
Phil Trans R Soc B, February 12, 2008; 363(1491): 557 - 572.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
D. A. Johnson and M. A. Thomas
The Monosaccharide Transporter Gene Family in Arabidopsis and Rice: A History of Duplications, Adaptive Evolution, and Functional Divergence
Mol. Biol. Evol., November 1, 2007; 24(11): 2412 - 2423.
[Abstract] [Full Text] [PDF]

Home page
 Crop Sci.Home page
S. R. Larson, X. Wu, T. A. Jones, K. B. Jensen, N. J. Chatterton, B. L. Waldron, J. G. Robins, B. S. Bushman, and A. J. Palazzo
Comparative Mapping of Growth Habit, Plant Height, and Flowering QTLs in Two Interspecific Families of Leymus
Crop Sci., November 21, 2006; 46(6): 2526 - 2539.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
C. S. Jang, T. L. Kamps, D. N. Skinner, S. R. Schulze, W. K. Vencill, and A. H. Paterson
Functional Classification, Genomic Organization, Putatively cis-Acting Regulatory Elements, and Relationship to Quantitative Trait Loci, of Sorghum Genes with Rhizome-Enriched Expression
Plant Physiology, November 1, 2006; 142(3): 1148 - 1159.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
J. E. Stajich and H. Lapp
Open source tools and toolkits for bioinformatics: significance, and where are we?
Brief Bioinform, September 1, 2006; 7(3): 287 - 296.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
Z. K. Li, M. Arif, D. B. Zhong, B. Y. Fu, J. L. Xu, J. Domingo-Rey, J. Ali, C. H. M. Vijayakumar, S. B. Yu, and G. S. Khush
Complex genetic networks underlying the defensive system of rice (Oryza sativa L.) to Xanthomonas oryzae pv. oryzae
PNAS, May 23, 2006; 103(21): 7994 - 7999.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
W. Zhao, P. Canaran, R. Jurkuta, T. Fulton, J. Glaubitz, E. Buckler, J. Doebley, B. Gaut, M. Goodman, J. Holland, et al.
Panzea: a database and resource for molecular and functional diversity in the maize genome
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D752 - D757.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
J. M. Lee, G. F. Davenport, D. Marshall, T.H. N. Ellis, M. J. Ambrose, J. Dicks, T. J.L. van Hintum, and A. J. Flavell
GERMINATE. A Generic Database for Integrating Genotypic and Phenotypic Information for Plant Genetic Resource Collections
Plant Physiology, October 1, 2005; 139(2): 619 - 631.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
X. Pan, L. Stein, and V. Brendel
SynBrowse: a synteny browser for comparative sequence analysis
Bioinformatics, September 1, 2005; 21(17): 3461 - 3468.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
D. L. Wheeler, B. Smith-White, V. Chetvernin, S. Resenchuk, S. M. Dombrowski, S. W. Pechous, T. Tatusova, and J. Ostell
Plant Genome Resources at the National Center for Biotechnology Information
Plant Physiology, July 1, 2005; 138(3): 1280 - 1288.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
H. Schoof, M. Spannagl, L. Yang, R. Ernst, H. Gundlach, D. Haase, G. Haberer, and K. F.X. Mayer
Munich Information Center for Protein Sequences Plant Genome Resources. A Framework for Integrative and Comparative Analyses
Plant Physiology, July 1, 2005; 138(3): 1301 - 1309.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
V. Pampanwar, F. Engler, J. Hatfield, S. Blundy, G. Gupta, and C. Soderlund
FPC Web Tools for Rice, Maize, and Distribution
Plant Physiology, May 1, 2005; 138(1): 116 - 126.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
A. N. Doust, K. M. Devos, M. D. Gadberry, M. D. Gale, and E. A. Kellogg
The Genetic Basis for Inflorescence Variation Between Foxtail and Green Millet (Poaceae)
Genetics, March 1, 2005; 169(3): 1659 - 1672.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
X. Tang, L. Shen, and J. A. Dickerson
BarleyExpress: a web-based submission tool for enriched microarray database annotations
Bioinformatics, February 1, 2005; 21(3): 399 - 401.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
N. L. Houston, C. Fan, Q.-Y. Xiang, J.-M. Schulze, R. Jung, and R. S. Boston
Phylogenetic Analyses Identify 10 Classes of the Protein Disulfide Isomerase Family in Plants, Including Single-Domain Protein Disulfide Isomerase-Related Proteins
Plant Physiology, February 1, 2005; 137(2): 762 - 778.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
A. Adai, C. Johnson, S. Mlotshwa, S. Archer-Evans, V. Manocha, V. Vance, and V. Sundaresan
Computational prediction of miRNAs in Arabidopsis thaliana
Genome Res., January 1, 2005; 15(1): 78 - 91.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
L. Shen, J. Gong, R. A. Caldo, D. Nettleton, D. Cook, R. P. Wise, and J. A. Dickerson
BarleyBase--an expression profiling database for plant genomics
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D614 - D618.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
C. Guillet-Claude, N. Isabel, B. Pelgas, and J. Bousquet
The Evolutionary Implications of knox-I Gene Duplications in Conifers: Correlated Evidence from Phylogeny, Gene Mapping, and Analysis of Functional Divergence
Mol. Biol. Evol., December 1, 2004; 21(12): 2232 - 2245.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
G. R. Lazo, S. Chao, D. D. Hummel, H. Edwards, C. C. Crossman, N. Lui, D. E. Matthews, V. L. Carollo, D. L. Hane, F. M. You, et al.
Development of an Expressed Sequence Tag (EST) Resource for Wheat (Triticum aestivum L.): EST Generation, Unigene Analysis, Probe Selection and Bioinformatics for a 16,000-Locus Bin-Delineated Map
Genetics, October 1, 2004; 168(2): 585 - 593.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
A. N. Doust, K. M. Devos, M. D. Gadberry, M. D. Gale, and E. A. Kellogg
Genetic control of branching in foxtail millet
PNAS, June 15, 2004; 101(24): 9045 - 9050.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
W. Zhao, J. Wang, X. He, X. Huang, Y. Jiao, M. Dai, S. Wei, J. Fu, Y. Chen, X. Ren, et al.
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics
Nucleic Acids Res., January 1, 2004; 32(90001): D377 - 382.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
H.-c. Wang, G. A. C. Singer, and D. A. Hickey
Mutational Bias Affects Protein Evolution in Flowering Plants
Mol. Biol. Evol., January 1, 2004; 21(1): 90 - 96.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
S. P. Hazen, R. M. Hawley, G. L. Davis, B. Henrissat, and J. D. Walton
Quantitative Trait Loci and Comparative Genomics of Cereal Cell Wall Composition
Plant Physiology, May 1, 2003; 132(1): 263 - 271.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
F. Y. Hu, D. Y. Tao, E. Sacks, B. Y. Fu, P. Xu, J. Li, Y. Yang, K. McNally, G. S. Khush, A. H. Paterson, et al.
Convergent evolution of perenniality in rice and sorghum
PNAS, April 1, 2003; 100(7): 4050 - 4054.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G. A. Thorisson and L. D. Stein
The SNP Consortium website: past, present and future
Nucleic Acids Res., January 1, 2003; 31(1): 124 - 127.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
D. E. Matthews, V. L. Carollo, G. R. Lazo, and O. D. Anderson
GrainGenes, the genome database for small-grain crops
Nucleic Acids Res., January 1, 2003; 31(1): 183 - 186.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
W. M. Karlowski, H. Schoof, V. Janakiraman, V. Stuempflen, and K. F. X. Mayer
MOsDB: an integrated information resource for rice genomics
Nucleic Acids Res., January 1, 2003; 31(1): 190 - 192.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
D. H. Ware, P. Jaiswal, J. Ni, I. V. Yap, X. Pan, K. Y. Clark, L. Teytelman, S. C. Schmidt, W. Zhao, K. Chang, et al.
Gramene, a Tool for Grass Genomics
Plant Physiology, December 1, 2002; 130(4): 1606 - 1613.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.