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Nucleic Acids Research, 2002, Vol. 30, No. 1 116-118
© 2002 Oxford University Press

FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones

Hidemasa Bono1, Takeya Kasukawa1,2, Masaaki Furuno1, Yoshihide Hayashizaki1 and Yasushi Okazaki1,*

1Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center (GSC), RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan and 2Multimedia Development Center, Advanced Technology Development Department, NTT Software Corporation, 223-1 Yamashita-Cho, Naka-ku, Yokohama, Kanagawa 231-8554 Japan

FANTOM DB, the database of Functional Annotation of RIKEN Mouse cDNA Clones, is designed to store sequence information of RIKEN full-length enriched mouse cDNA clones, graphical views of sequence analysis results, curated functional annotation information and additional descriptions, including Gene Ontology terms. RIKEN’s Mouse Gene Encyclopedia Project aims to collect full-length enriched cDNA clones from various mouse tissues, determine the full-length nucleotide sequences, infer their chromosomal locations by computer and characterize gene expression patterns. FANTOM DB has been developed to facilitate this work and to facilitate functional genomic studies such as positional candidate cloning, cDNA microarrays and protein interaction analyses. FANTOM DB contains 21 076 full-length cDNA sequences with rich functional annotations and is publicly available. FANTOM DB thus provides curated functional annotation to RIKEN full-length enriched mouse clones, and has links to other public resources. FANTOM DB can be accessed at http://fantom.gsc.riken.go.jp/db/.

* To whom correspondence should be addressed. Tel: +81 45 503 9222; Fax: +81 45 503 9216; Email: okazaki{at}gsc.riken.go.jp


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