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Nucleic Acids Research, 2003, Vol. 31, No. 1 138-141
© 2003 Oxford University Press

The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa)

Emmanuelle Karsenty1,2, Emmanuel Barillot1,2,3, Gwenola Tosser-Klopp4, Yvette Lahbib-Mansais4, Denis Milan4, François Hatey4, Susanna Cirera5, Milena Sawera5, Claus B. Jørgensen5, Bhanu Chowdhary5,6, Merete Fredholm5, Klaus Wimmers7, Siriluck Ponsuksili7, Roberta Davoli8, Luca Fontanesi8, Silvia Braglia8, Paolo Zambonelli8, Daniele Bigi8, Stefan Neuenschwander9 and Joël Gellin*,4

1 Infobiogen, 523 place des terrasses, F-91000 Evry, France 2 Unité de Recherche Génomique-Info, INRA, 523 place des terrasses, F-91000 Evry, France 3 Généthon, 1 bis rue de l'internationale, 91000 Evry, France 4 Laboratoire de Génétique Cellulaire, INRA, 31326 Castanet-Tolosan, BP27, France 5 The Royal Veterinary and Agricultural University, Department of Animal Science and Animal Health, Division of Animal Genetics, Buelowsvej 13, Copenhagen, Frederiksberg C, Denmark 6 Department of Veterinary Anatomy and Public Health, Texas A&M University, College Station TX-77843, USA 7 Institute of Animal Breeding Science, University of Bonn, Endenicher Allee 15, D-53115 Bonn, Germany 8 Bologna University, DIPROVAL Sez. Allevamenti Zootecnici, Via F.lli Rosselli, 107, 42100 Coviolo-Reggio Emilia, Italy 9 Institut für Nutztierwissenschaften, Tannenstrasse 1, ETH-Zentrum, CH-8092 Zürich, Switzerland

*To whom correspondence should be addressed. Tel: +33 5 61 28 54 30; Fax: +33 5 61 28 53 08; Email: gellin{at}toulouse.inra.fr

ABSTRACT

The GENETPIG database has been established for storing and disseminating the results of the European project: ‘GENETPIG: identification of genes controlling economic traits in pig’. The partners of this project have mapped about 630 porcine and human ESTs onto the pig genome. The database collects the mapping results and links them to other sources of mapping data; this includes pig maps as well as available comparative mapping information. Functional annotation of the mapped ESTs is also given when a significant similarity to cognate genes was established. The database is accessible for consultation via the Internet at http://www.infobiogen.fr/services/Genetpig/.


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