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Nucleic Acids Research, 2003, Vol. 31, No. 1 147-151
© 2003 Oxford University Press

ASAP, a systematic annotation package for community analysis of genomes

Jeremy D. Glasner1,2, Paul Liss1,2, Guy Plunkett III2, Aaron Darling1, Tejasvini Prasad1, Michael Rusch1, Alexis Byrnes1, Michael Gilson1, Bryan Biehl1, Frederick R. Blattner2 and Nicole T. Perna*,1

1 Animal Health and Biomedical Sciences, University of Wisconsin-Madison, 656 Linden Dr Madison, WI 53706-1581, USA 2 Genetics Department, University of Wisconsin-Madison, 445 Henry Mall, Madison, WI 53706, USA

*To whom correspondence should be addressed. Tel: +1 6082620728; Fax: +1 6082627420; Email: perna{at}ahabs.wisc.edu

ABSTRACT

ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and functional characterization (https://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm). ASAP facilitates ongoing community annotation of genomes and tracking of information as genome projects move from preliminary data collection through post-sequencing functional analysis. The ASAP database includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources. ASAP supports three levels of users: public viewers, annotators and curators. Public viewers can currently browse updated annotation information for Escherichia coli K-12 strain MG1655, genome-wide transcript profiles from more than 50 microarray experiments and an extensive collection of mutant strains and associated phenotypic data. Annotators worldwide are currently using ASAP to participate in a community annotation project for the Erwinia chrysanthemi strain 3937 genome. Curation of the E. chrysanthemi genome annotation as well as those of additional published enterobacterial genomes is underway and will be publicly accessible in the near future.


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