Nucleic Acids Research, 2003, Vol. 31, No. 1 172-175
© 2003 Oxford University Press
The FlyBase database of the Drosophila genome projects and community literature
The FlyBase Consortium*FlyBase, The Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA
*Correspondence should be addressed to William M. Gelbart, FlyBase, The Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA. Tel: +1 6174952906; Fax: +1 6174961354; Email: gelbart{at}morgan.harvard.edu
Current members of the FlyBase Consortium are W. Gelbart, L. Bayraktaroglu, B. Bettencourt, K. Campbell, M. Crosby, D. Emmert, P. Hradecky, Y. Huang, S. Letovsky, B. Matthews, S. Russo, A. Schroeder, F. Smutniak, P. Zhou, and M. Zytkovicz (Biological Laboratories, Harvard University, Cambridge, MA); M. Ashburner, R. Drysdale, A. de Grey, R. Foulger, G. Millburn and C. Yamada (Department of Genetics, University of Cambridge, Cambridge, UK); T. Kaufman, K. Matthews, D. Gilbert, G. Grumbling and V. Strelets (Department of Biology, Indiana University, Bloomington, IN); C. Shemen (NCBI, Bethesda); G. Rubin, B. Berman, E. Frise, M. Gibson, N. Harris, J. Kaminker, S. Lewis, B. Marshall, S. Misra, C. Mungall, S. Prochnik, J. Richter, C. Smith, S. Shu, J. Tupy and C. Wiel (University of California, Berkeley, CA, and Lawrence Berkeley National Laboratories)
ABSTRACT
FlyBase (http://flybase.bio.indiana.edu/) provides an integrated view of the fundamental genomic and genetic data on the major genetic model Drosophila melanogaster and related species. FlyBase has primary responsibility for the continual reannotation of the D. melanogaster genome. The ultimate goal of the reannotation effort is to decorate the euchromatic sequence of the genome with as much biological information as is available from the community and from the major genome project centers. A complete revision of the annotations of the now-finished euchromatic genomic sequence has been completed. There are many points of entry to the genome within FlyBase, most notably through maps, gene products and ontologies, structured phenotypic and gene expression data, and anatomy.
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M. Stanke, R. Steinkamp, S. Waack, and B. Morgenstern AUGUSTUS: a web server for gene finding in eukaryotes Nucleic Acids Res., July 1, 2004; 32(suppl_2): W309 - W312. [Abstract] [Full Text] [PDF] |
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C. Schulz, A. A. Kiger, S. I. Tazuke, Y. M. Yamashita, L. C. Pantalena-Filho, D. L. Jones, C. G. Wood, and M. T. Fuller A Misexpression Screen Reveals Effects of bag-of-marbles and TGF{beta} Class Signaling on the Drosophila Male Germ-Line Stem Cell Lineage Genetics, June 1, 2004; 167(2): 707 - 723. [Abstract] [Full Text] [PDF] |
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E. Ryder, F. Blows, M. Ashburner, R. Bautista-Llacer, D. Coulson, J. Drummond, J. Webster, D. Gubb, N. Gunton, G. Johnson, et al. The DrosDel Collection: A Set of P-Element Insertions for Generating Custom Chromosomal Aberrations in Drosophila melanogaster Genetics, June 1, 2004; 167(2): 797 - 813. [Abstract] [Full Text] [PDF] |
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J. Stalker, B. Gibbins, P. Meidl, J. Smith, W. Spooner, H.-R. Hotz, and A. V. Cox The Ensembl Web Site: Mechanics of a Genome Browser Genome Res., May 1, 2004; 14(5): 951 - 955. [Abstract] [Full Text] [PDF] |
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A. Laurencon, C. M. Orme, H. K. Peters, C. L. Boulton, E. K. Vladar, S. A. Langley, E. P. Bakis, D. T. Harris, N. J. Harris, S. M. Wayson, et al. A Large-Scale Screen for Mutagen-Sensitive Loci in Drosophila Genetics, May 1, 2004; 167(1): 217 - 231. [Abstract] [Full Text] [PDF] |
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M. N. Arbeitman, A. A. Fleming, M. L. Siegal, B. H. Null, and B. S. Baker A genomic analysis of Drosophila somatic sexual differentiation and its regulation Development, May 1, 2004; 131(9): 2007 - 2021. [Abstract] [Full Text] [PDF] |
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K. Hirai, S. Toyohira, T. Ohsako, and M.-T. Yamamoto Isolation and Cytogenetic Characterization of Male Meiotic Mutants of Drosophila melanogaster Genetics, April 1, 2004; 166(4): 1795 - 1806. [Abstract] [Full Text] [PDF] |
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F. A. Kondrashov, A. Y. Ogurtsov, and A. S. Kondrashov Bioinformatical assay of human gene morbidity Nucleic Acids Res., March 12, 2004; 32(5): 1731 - 1737. [Abstract] [Full Text] [PDF] |
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J. H. Thomas and E. Wieschaus src64 and tec29 are required for microfilament contraction during Drosophila cellularization Development, February 15, 2004; 131(4): 863 - 871. [Abstract] [Full Text] [PDF] |
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K. Koles, K. D. Irvine, and V. M. Panin Functional Characterization of Drosophila Sialyltransferase J. Biol. Chem., February 6, 2004; 279(6): 4346 - 4357. [Abstract] [Full Text] [PDF] |
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K. Sawamura, J. Roote, C.-I Wu, and M.-T. Yamamoto Genetic Complexity Underlying Hybrid Male Sterility in Drosophila Genetics, February 1, 2004; 166(2): 789 - 796. [Abstract] [Full Text] [PDF] |
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K. Patterson, A. B. Molofsky, C. Robinson, S. Acosta, C. Cater, and J. A. Fischer The Functions of Klarsicht and Nuclear Lamin in Developmentally Regulated Nuclear Migrations of Photoreceptor Cells in the Drosophila Eye Mol. Biol. Cell, February 1, 2004; 15(2): 600 - 610. [Abstract] [Full Text] [PDF] |
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K.A. HAYNES, B.A. LEIBOVITCH, S.H. RANGWALA, C. CRAIG, and S.C.R. ELGIN Analyzing Heterochromatin Formation Using Chromosome 4 of Drosophila melanogaster Cold Spring Harb Symp Quant Biol, January 1, 2004; 69(0): 267 - 272. [Abstract] [PDF] |
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D. J. Orengo, M. Papaceit, and E. Juan A Minisatellite with Fold-Back Structure is Included in the 5'-Flanking Region of the Adh Gene of Scaptodrosophila lebanonensis J. Hered., January 1, 2004; 95(1): 62 - 69. [Abstract] [Full Text] [PDF] |
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R. Apweiler, A. Bairoch, C. H. Wu, W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, et al. UniProt: the Universal Protein knowledgebase Nucleic Acids Res., January 1, 2004; 32(90001): D115 - 119. [Abstract] [Full Text] [PDF] |
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