Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (501K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (19)
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by O'Brien, E. A.
Right arrow Articles by Burger, G.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by O'Brien, E. A.
Right arrow Articles by Burger, G.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2003, Vol. 31, No. 1 176-178
© 2003 Oxford University Press

GOBASE—a database of mitochondrial and chloroplast information

Emmet A. O'Brien*, Elarbi Badidi, Ania Barbasiewicz, Cristina deSousa, B. Franz Lang and Gertraud Burger

Program in Evolutionary Biology, Canadian Institute for Advanced Research, Departement de Biochimie, Universite de Montreal, 2900 Boulevard Edouard-Montpetit, Montreal, Quebec H3T 1J4, Canada

*To whom correspondence should be addressed. Email: eobrien{at}bch.umontreal.ca

ABSTRACT

GOBASE is a relational database containing integrated sequence, RNA secondary structure and biochemical and taxonomic information about organelles. GOBASE release 6 (summer 2002) contains over 130 000 mitochondrial sequences, an increase of 37% over the previous release, and more than 30 000 chloroplast sequences in a new auxiliary database. To handle this flood of new data, we have designed and implemented GOpop, a Java system for population and verification of the database. We have also implemented a more powerful and flexible user interface using the PHP programming language. http://megasun.bch.umontreal.ca/gobase/gobase.html.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
E. A. O'Brien, Y. Zhang, E. Wang, V. Marie, W. Badejoko, B. F. Lang, and G. Burger
GOBASE: an organelle genome database
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D946 - D950.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
P. C. Feijao, L. S. Neiva, A. M. L. d. Azeredo-Espin, and A. C. Lessinger
AMiGA: the arthropodan mitochondrial genomes accessible database
Bioinformatics, April 1, 2006; 22(7): 902 - 903.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
L. Cui, N. Veeraraghavan, A. Richter, K. Wall, R. K. Jansen, J. Leebens-Mack, I. Makalowska, and C. W. dePamphilis
ChloroplastDB: the Chloroplast Genome Database
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D692 - D696.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
E. A. O'Brien, Y. Zhang, L. Yang, E. Wang, V. Marie, B. F. Lang, and G. Burger
GOBASE--a database of organelle and bacterial genome information
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D697 - D699.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
J.-F. Pombert, C. Otis, C. Lemieux, and M. Turmel
The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages
Mol. Biol. Evol., September 1, 2005; 22(9): 1903 - 1918.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. M. Hauth, U. G. Maier, B. F. Lang, and G. Burger
The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region
Nucleic Acids Res., August 5, 2005; 33(14): 4433 - 4442.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
J. M. Cameron, T. Hurd, and B. H. Robinson
Computational identification of human mitochondrial proteins based on homology to yeast mitochondrially targeted proteins
Bioinformatics, May 1, 2005; 21(9): 1825 - 1830.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
D. Cotter, P. Guda, E. Fahy, and S. Subramaniam
MitoProteome: mitochondrial protein sequence database and annotation system
Nucleic Acids Res., January 1, 2004; 32(90001): D463 - 467.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.