Nucleic Acids Research, 2003, Vol. 31, No. 1 248-250
© 2003 Oxford University Press
BIND: the Biomolecular Interaction Network Database
Department of Biochemistry, Samuel Lunenfeld Research Institute, University of Toronto, Toronto M5G 1X5, Canada
*To whom correspondence should be addressed. Tel: +1 6472225781; Fax: +1 4165868869; Email: hogue{at}mshri.on.ca
The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors
ABSTRACT
The Biomolecular Interaction Network Database (BIND: http://bind.ca) archives biomolecular interaction, complex and pathway information. A web-based system is available to query, view and submit records. BIND continues to grow with the addition of individual submissions as well as interaction data from the PDB and a number of large-scale interaction and complex mapping experiments using yeast two hybrid, mass spectrometry, genetic interactions and phage display. We have developed a new graphical analysis tool that provides users with a view of the domain composition of proteins in interaction and complex records to help relate functional domains to protein interactions. An interaction network clustering tool has also been developed to help focus on regions of interest. Continued input from users has helped further mature the BIND data specification, which now includes the ability to store detailed information about genetic interactions. The BIND data specification is available as ASN.1 and XML DTD.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  P. Bjorkholm and E. L. L. Sonnhammer Comparative analysis and unification of domain-domain interaction networks Bioinformatics, November 15, 2009; 25(22): 3020 - 3025. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Ruepp, B. Waegele, M. Lechner, B. Brauner, I. Dunger-Kaltenbach, G. Fobo, G. Frishman, C. Montrone, and H.-W. Mewes CORUM: the comprehensive resource of mammalian protein complexes--2009 Nucleic Acids Res., November 1, 2009; (2009) gkp914v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. P. Goncalves, M. Graos, and A. X.C.N. Valente POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data J R Soc Interface, October 6, 2009; 6(39): 881 - 896. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Keerthikumar, S. Bhadra, K. Kandasamy, R. Raju, Y. L. Ramachandra, C. Bhattacharyya, K. Imai, O. Ohara, S. Mohan, and A. Pandey Prediction of Candidate Primary Immunodeficiency Disease Genes Using a Support Vector Machine Learning Approach DNA Res, October 3, 2009; (2009) dsp019v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Minguez, S. Gotz, D. Montaner, F. Al-Shahrour, and J. Dopazo SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks Nucleic Acids Res., July 1, 2009; 37(suppl_2): W109 - W114. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Chen, E. E. Bardes, B. J. Aronow, and A. G. Jegga ToppGene Suite for gene list enrichment analysis and candidate gene prioritization Nucleic Acids Res., July 1, 2009; 37(suppl_2): W305 - W311. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Blankenburg, F. Ramirez, J. Buch, and M. Albrecht DASMIweb: online integration, analysis and assessment of distributed protein interaction data Nucleic Acids Res., July 1, 2009; 37(suppl_2): W122 - W128. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Alexeyenko and E. L.L. Sonnhammer Global networks of functional coupling in eukaryotes from comprehensive data integration Genome Res., June 1, 2009; 19(6): 1107 - 1116. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Blankenburg, R. D. Finn, A. Prlic, A. M. Jenkinson, F. Ramirez, D. Emig, S.-E. Schelhorn, J. Buch, T. Lengauer, and M. Albrecht DASMI: exchanging, annotating and assessing molecular interaction data Bioinformatics, May 15, 2009; 25(10): 1321 - 1328. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Tuncbag, G. Kar, O. Keskin, A. Gursoy, and R. Nussinov A survey of available tools and web servers for analysis of protein-protein interactions and interfaces Brief Bioinform, May 1, 2009; 10(3): 217 - 232. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Georgii, S. Dietmann, T. Uno, P. Pagel, and K. Tsuda Enumeration of condition-dependent dense modules in protein interaction networks Bioinformatics, April 1, 2009; 25(7): 933 - 940. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. J. Wodak, S. Pu, J. Vlasblom, and B. Seraphin Challenges and Rewards of Interaction Proteomics Mol. Cell. Proteomics, January 1, 2009; 8(1): 3 - 18. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C.-Y. Li, Q.-R. Liu, P.-W. Zhang, X.-M. Li, L. Wei, and G. R. Uhl OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules Nucleic Acids Res., January 1, 2009; 37(suppl_1): D251 - D260. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. G. Tarcea, T. Weymouth, A. Ade, A. Bookvich, J. Gao, V. Mahavisno, Z. Wright, A. Chapman, M. Jayapandian, A. Ozgur, et al. Michigan molecular interactions r2: from interacting proteins to pathways Nucleic Acids Res., January 1, 2009; 37(suppl_1): D642 - D646. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. A. Georges, M. C. Biery, S.-y. Kim, J. M. Schelter, J. Guo, A. N. Chang, A. L. Jackson, M. O. Carleton, P. S. Linsley, M. A. Cleary, et al. Coordinated Regulation of Cell Cycle Transcripts by p53-Inducible microRNAs, miR-192 and miR-215 Cancer Res., December 15, 2008; 68(24): 10105 - 10112. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T.-t. Soong, K. O. Wrzeszczynski, and B. Rost Physical protein-protein interactions predicted from microarrays Bioinformatics, November 15, 2008; 24(22): 2608 - 2614. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Z. Hu, E. S. Snitkin, and C. DeLisi VisANT: an integrative framework for networks in systems biology Brief Bioinform, July 1, 2008; 9(4): 317 - 325. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Ozgur, T. Vu, G. Erkan, and D. R. Radev Identifying gene-disease associations using centrality on a literature mined gene-interaction network Bioinformatics, July 1, 2008; 24(13): i277 - i285. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C.-Y. Lin, C.-H. Chin, H.-H. Wu, S.-H. Chen, C.-W. Ho, and M.-T. Ko Hubba: hub objects analyzer--a framework of interactome hubs identification for network biology Nucleic Acids Res., July 1, 2008; 36(suppl_2): W438 - W443. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Li, P. Agarwal, and D. Rajagopalan A global pathway crosstalk network Bioinformatics, June 15, 2008; 24(12): 1442 - 1447. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. D. Bromberg, A. Ma'ayan, S. R. Neves, and R. Iyengar Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth Science, May 16, 2008; 320(5878): 903 - 909. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Ideker and R. Sharan Protein networks in disease Genome Res., April 1, 2008; 18(4): 644 - 652. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Orchard and H. Hermjakob The HUPO proteomics standards initiative--easing communication and minimizing data loss in a changing world Brief Bioinform, March 1, 2008; 9(2): 166 - 173. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Cui, P. Li, G. Li, F. Xu, C. Zhao, Y. Li, Z. Yang, G. Wang, Q. Yu, Y. Li, et al. AtPID: Arabidopsis thaliana protein interactome database an integrative platform for plant systems biology Nucleic Acids Res., January 11, 2008; 36(suppl_1): D999 - D1008. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Saunders, S. Lyon, M. Day, B. Riley, E. Chenette, and S. Subramaniam The Molecule Pages database Nucleic Acids Res., January 11, 2008; 36(suppl_1): D700 - D706. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Ruepp, B. Brauner, I. Dunger-Kaltenbach, G. Frishman, C. Montrone, M. Stransky, B. Waegele, T. Schmidt, O. N. Doudieu, V. Stumpflen, et al. CORUM: the comprehensive resource of mammalian protein complexes Nucleic Acids Res., January 11, 2008; 36(suppl_1): D646 - D650. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Pagel, M. Oesterheld, O. Tovstukhina, N. Strack, V. Stumpflen, and D. Frishman DIMA 2.0 predicted and known domain interactions Nucleic Acids Res., January 11, 2008; 36(suppl_1): D651 - D655. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Donitz, B. Goemann, M. Lize, H. Michael, N. Sasse, E. Wingender, and A. P. Potapov EndoNet: an information resource about regulatory networks of cell-to-cell communication Nucleic Acids Res., January 11, 2008; 36(suppl_1): D689 - D694. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Gong, D. Zhou, Y. Ren, Y. Wang, Z. Zuo, Y. Shen, F. Xiao, Q. Zhu, A. Hong, X. Zhou, et al. PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains Nucleic Acids Res., January 11, 2008; 36(suppl_1): D679 - D683. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Geisler-Lee, N. O'Toole, R. Ammar, N. J. Provart, A. H. Millar, and M. Geisler A Predicted Interactome for Arabidopsis Plant Physiology, October 1, 2007; 145(2): 317 - 329. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Labarga, F. Valentin, M. Anderson, and R. Lopez Web Services at the European Bioinformatics Institute Nucleic Acids Res., July 13, 2007; 35(suppl_2): W6 - W11. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Al-Shahrour, P. Minguez, J. Tarraga, I. Medina, E. Alloza, D. Montaner, and J. Dopazo FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments Nucleic Acids Res., July 13, 2007; 35(suppl_2): W91 - W96. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Dawelbait, C. Winter, Y. Zhang, C. Pilarsky, R. Grutzmann, J.-C. Heinrich, and M. Schroeder Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data Bioinformatics, July 1, 2007; 23(13): i115 - i124. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. K. Lim, K. Wang, C. Lefebvre, and A. Califano Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks Bioinformatics, July 1, 2007; 23(13): i282 - i288. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. A. Calderwood, K. Venkatesan, L. Xing, M. R. Chase, A. Vazquez, A. M. Holthaus, A. E. Ewence, N. Li, T. Hirozane-Kishikawa, D. E. Hill, et al. Epstein-Barr virus and virus human protein interaction maps PNAS, May 1, 2007; 104(18): 7606 - 7611. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Przulj Biological network comparison using graphlet degree distribution Bioinformatics, January 15, 2007; 23(2): e177 - e183. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Jayapandian, A. Chapman, V. G. Tarcea, C. Yu, A. Elkiss, A. Ianni, B. Liu, A. Nandi, C. Santos, P. Andrews, et al. Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together Nucleic Acids Res., January 12, 2007; 35(suppl_1): D566 - D571. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. C. Mak, M. Daly, B. Gruebel, and T. Ideker CellCircuits: a database of protein network models Nucleic Acids Res., January 12, 2007; 35(suppl_1): D538 - D545. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Xu and Y. Li Discovering disease-genes by topological features in human protein-protein interaction network Bioinformatics, November 15, 2006; 22(22): 2800 - 2805. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. A. George, J. Y. Liu, L. L. Feng, R. J. Bryson-Richardson, D. Fatkin, and M. A. Wouters Analysis of protein sequence and interaction data for candidate disease gene prediction Nucleic Acids Res., November 14, 2006; 34(19): e130 - e130. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Przulj and D. J Higham Modelling protein-protein interaction networks via a stickiness index J R Soc Interface, October 22, 2006; 3(10): 711 - 716. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Yu and M. Gerstein Colloquium Papers: Genomic analysis of the hierarchical structure of regulatory networks PNAS, October 3, 2006; 103(40): 14724 - 14731. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Sprinzak, Y. Altuvia, and H. Margalit Colloquium Papers: Characterization and prediction of protein-protein interactions within and between complexes PNAS, October 3, 2006; 103(40): 14718 - 14723. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Malik, L. Franke, and A. Siebes Combination of text-mining algorithms increases the performance Bioinformatics, September 1, 2006; 22(17): 2151 - 2157. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Chen, W. Hsu, M. L. Lee, and S.-K. Ng Increasing confidence of protein interactomes using network topological metrics Bioinformatics, August 15, 2006; 22(16): 1998 - 2004. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Massjouni, C. G. Rivera, and T. M. Murali VIRGO: computational prediction of gene functions. Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W340 - W344. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Hull, K. Wolstencroft, R. Stevens, C. Goble, M. R. Pocock, P. Li, and T. Oinn Taverna: a tool for building and running workflows of services. Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W729 - W732. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. P. Davis, H. Braberg, M.-Y. Shen, U. Pieper, A. Sali, and M.S. Madhusudhan Protein complex compositions predicted by structural similarity Nucleic Acids Res., May 31, 2006; 34(10): 2943 - 2952. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Guo, R. Liu, C. D. Shriver, H. Hu, and M. N. Liebman Assessing semantic similarity measures for the characterization of human regulatory pathways Bioinformatics, April 15, 2006; 22(8): 967 - 973. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Yu, A. Paccanaro, V. Trifonov, and M. Gerstein Predicting interactions in protein networks by completing defective cliques Bioinformatics, April 1, 2006; 22(7): 823 - 829. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Dinakarpandian, Y. Lee, K. Vishwanath, and R. Lingambhotla MachineProse: an Ontological Framework for Scientific Assertions J. Am. Med. Inform. Assoc., March 1, 2006; 13(2): 220 - 232. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Wu, J. Wang, C. Liu, Y. Zhang, B. Shi, X. Zhu, Z. Zhang, G. Skogerbo, L. Chen, H. Lu, et al. NPInter: the noncoding RNAs and protein related biomacromolecules interaction database Nucleic Acids Res., January 1, 2006; 34(suppl_1): D150 - D152. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. W. Mewes, D. Frishman, K. F. X. Mayer, M. Munsterkotter, O. Noubibou, P. Pagel, T. Rattei, M. Oesterheld, A. Ruepp, and V. Stumpflen MIPS: analysis and annotation of proteins from whole genomes in 2005 Nucleic Acids Res., January 1, 2006; 34(suppl_1): D169 - D172. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
U. Guldener, M. Munsterkotter, M. Oesterheld, P. Pagel, A. Ruepp, H.-W. Mewes, and V. Stumpflen MPact: the MIPS protein interaction resource on yeast Nucleic Acids Res., January 1, 2006; 34(suppl_1): D436 - D441. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Potapov, I. Liebich, J. Donitz, K. Schwarzer, N. Sasse, T. Schoeps, T. Crass, and E. Wingender EndoNet: an information resource about endocrine networks Nucleic Acids Res., January 1, 2006; 34(suppl_1): D540 - D545. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Dolinski and D. Botstein Changing perspectives in yeast research nearly a decade after the genome sequence Genome Res., December 1, 2005; 15(12): 1611 - 1619. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. E. Cusick, N. Klitgord, M. Vidal, and D. E. Hill Interactome: gateway into systems biology Hum. Mol. Genet., October 15, 2005; 14(suppl_2): R171 - R181. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. S. Aytuna, A. Gursoy, and O. Keskin Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces Bioinformatics, June 15, 2005; 21(12): 2850 - 2855. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. H. Lee and D. Lee Modularized learning of genetic interaction networks from biological annotations and mRNA expression data Bioinformatics, June 1, 2005; 21(11): 2739 - 2747. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Espadaler, R. Aragues, N. Eswar, M. A. Marti-Renom, E. Querol, F. X. Aviles, A. Sali, and B. Oliva Detecting remotely related proteins by their interactions and sequence similarity PNAS, May 17, 2005; 102(20): 7151 - 7156. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. O. Jonsdottir, F. S. Jorgensen, and S. Brunak Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates Bioinformatics, May 15, 2005; 21(10): 2145 - 2160. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. P. Davis and A. Sali PIBASE: a comprehensive database of structurally defined protein interfaces Bioinformatics, May 1, 2005; 21(9): 1901 - 1907. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Kemmeren, T. T. J. P. Kockelkorn, T. Bijma, R. Donders, and F. C. P. Holstege Predicting gene function through systematic analysis and quality assessment of high-throughput data Bioinformatics, April 15, 2005; 21(8): 1644 - 1652. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Droit, G. G Poirier, and J. M Hunter Experimental and bioinformatic approaches for interrogating protein-protein interactions to determine protein function J. Mol. Endocrinol., April 1, 2005; 34(2): 263 - 280. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Orchard, H. Hermjakob, and R. Apweiler Annotating the Human Proteome Mol. Cell. Proteomics, April 1, 2005; 4(4): 435 - 440. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. A. Trabold, M. Weinberger, L. Feng, and W. C. Burhans Activation of Budding Yeast Replication Origins and Suppression of Lethal DNA Damage Effects on Origin Function by Ectopic Expression of the Co-chaperone Protein Mge1 J. Biol. Chem., April 1, 2005; 280(13): 12413 - 12421. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C.-Y. Lin, C.-L. Chen, C.-S. Cho, L.-M. Wang, C.-M. Chang, P.-Y. Chen, C.-Z. Lo, and C. A. Hsiung hp-DPI: Helicobacter pylori Database of Protein Interactomes--embracing experimental and inferred interactions Bioinformatics, April 1, 2005; 21(7): 1288 - 1290. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Pagel, S. Kovac, M. Oesterheld, B. Brauner, I. Dunger-Kaltenbach, G. Frishman, C. Montrone, P. Mark, V. Stumpflen, H.-W. Mewes, et al. The MIPS mammalian protein-protein interaction database Bioinformatics, March 15, 2005; 21(6): 832 - 834. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. D. Finn, M. Marshall, and A. Bateman iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions Bioinformatics, February 1, 2005; 21(3): 410 - 412. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Brooksbank, G. Cameron, and J. Thornton The European Bioinformatics Institute's data resources: towards systems biology Nucleic Acids Res., January 1, 2005; 33(suppl_1): D46 - D53. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Murakami, K. Shimada, M. Kawai, and H. Koga InCeP: Intracellular Pathway Based on mKIAA Protein-Protein Interactions DNA Res, January 1, 2005; 12(5): 379 - 387. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Alfarano, C. E. Andrade, K. Anthony, N. Bahroos, M. Bajec, K. Bantoft, D. Betel, B. Bobechko, K. Boutilier, E. Burgess, et al. The Biomolecular Interaction Network Database and related tools 2005 update Nucleic Acids Res., January 1, 2005; 33(suppl_1): D418 - D424. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. A. Ananko, N. L. Podkolodny, I. L. Stepanenko, O. A. Podkolodnaya, D. A. Rasskazov, D. S. Miginsky, V. A. Likhoshvai, A. V. Ratushny, N. N. Podkolodnaya, and N. A. Kolchanov GeneNet in 2005 Nucleic Acids Res., January 1, 2005; 33(suppl_1): D425 - D427. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Joshi-Tope, M. Gillespie, I. Vastrik, P. D'Eustachio, E. Schmidt, B. de Bono, B. Jassal, G.R. Gopinath, G.R. Wu, L. Matthews, et al. Reactome: a knowledgebase of biological pathways Nucleic Acids Res., January 1, 2005; 33(suppl_1): D428 - D432. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. von Mering, L. J. Jensen, B. Snel, S. D. Hooper, M. Krupp, M. Foglierini, N. Jouffre, M. A. Huynen, and P. Bork STRING: known and predicted protein-protein associations, integrated and transferred across organisms Nucleic Acids Res., January 1, 2005; 33(suppl_1): D433 - D437. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. de la Cruz, S. Bromberg, D. Pasko, M. Shimoyama, S. Twigger, J. Chen, C.-F. Chen, C. Fan, C. Foote, G. R. Gopinath, et al. The Rat Genome Database (RGD): developments towards a phenome database Nucleic Acids Res., January 1, 2005; 33(suppl_1): D485 - D491. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. M. Stephens, J. Y. Chen, M. G. Davidson, S. Thomas, and B. M. Trute Oracle Database 10g: a platform for BLAST search and Regular Expression pattern matching in life sciences Nucleic Acids Res., January 1, 2005; 33(suppl_1): D675 - D679. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Wang, S. Vavassori, L. M. Schweizer, and M. Schweizer Impaired PRPP-synthesizing capacity compromises cell integrity signalling in Saccharomyces cerevisiae Microbiology, October 1, 2004; 150(10): 3327 - 3339. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Paek, J. Park, and K.-J. Lee Multi-layered Representation for Cell Signaling Pathways Mol. Cell. Proteomics, October 1, 2004; 3(10): 1009 - 1022. [Abstract] [Full Text] [PDF]
|
|