Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (50K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (38)
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Baranov, P. V.
Right arrow Articles by Atkins, J. F.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Baranov, P. V.
Right arrow Articles by Atkins, J. F.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2003, Vol. 31, No. 1 87-89
© 2003 Oxford University Press

RECODE 2003

Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland and John F. Atkins*

Department of Human Genetics, University of Utah, 15N 2030E Room 7410, Salt Lake City, UT 84112-5330, USA

*To whom correspondence should be addressed. Tel: +1 801 585 3434; Fax: +1 801 585 3910; Email: atkins{at}howard.genetics.utah.edu

ABSTRACT

The RECODE database is a compilation of translational recoding events (programmed ribosomal frameshifting, codon redefinition and translational bypass). The database provides information about the genes utilizing these events for their expression, recoding sites, stimulatory sequences and other relevant information. The Database is freely available at http://recode.genetics.utah.edu/.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
Nucleic Acids ResHome page
Y. Huang, E. V. Koonin, D. J. Lipman, and T. M. Przytycka
Selection for minimization of translational frameshifting errors as a factor in the evolution of codon usage
Nucleic Acids Res., November 1, 2009; 37(20): 6799 - 6810.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
P.-Y. Liao, Y. S. Choi, and K. H. Lee
FSscan: a mechanism-based program to identify +1 ribosomal frameshift hotspots
Nucleic Acids Res., September 26, 2009; (2009) gkp796v1.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. Bekaert, A. E. Firth, Y. Zhang, V. N. Gladyshev, J. F. Atkins, and P. V. Baranov
Recode-2: new design, new search tools, and many more genes
Nucleic Acids Res., September 25, 2009; (2009) gkp788v1.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
G. H. Jacobs, A. Chen, S. G. Stevens, P. A. Stockwell, M. A. Black, W. P. Tate, and C. M. Brown
Transterm: a database to aid the analysis of regulatory sequences in mRNAs
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D72 - D76.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C. Theis, J. Reeder, and R. Giegerich
KnotInFrame: prediction of -1 ribosomal frameshift events
Nucleic Acids Res., October 1, 2008; 36(18): 6013 - 6020.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
V. A. Doronina, C. Wu, P. de Felipe, M. S. Sachs, M. D. Ryan, and J. D. Brown
Site-Specific Release of Nascent Chains from Ribosomes at a Sense Codon
Mol. Cell. Biol., July 1, 2008; 28(13): 4227 - 4239.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. Wolf, M. Dimitrova, T. F. Baumert, and C. Schuster
The major form of hepatitis C virus alternate reading frame protein is suppressed by core protein expression
Nucleic Acids Res., May 1, 2008; 36(9): 3054 - 3064.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. Castellano, V. N. Gladyshev, R. Guigo, and M. J. Berry
SelenoDB 1.0 : a database of selenoprotein genes, proteins and SECIS elements
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D332 - D338.
[Abstract] [Full Text] [PDF]


Home page
RNAHome page
C. L. Sanders and J. F. Curran
Genetic analysis of the E site during RF2 programmed frameshifting
RNA, September 1, 2007; 13(9): 1483 - 1491.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
N. Gupta, S. Tanner, N. Jaitly, J. N. Adkins, M. Lipton, R. Edwards, M. Romine, A. Osterman, V. Bafna, R. D. Smith, et al.
Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
Genome Res., September 1, 2007; 17(9): 1362 - 1377.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. Leger, D. Dulude, S. V. Steinberg, and L. Brakier-Gingras
The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift
Nucleic Acids Res., August 17, 2007; (2007) gkm578v1.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
J. L. Jacobs, A. T. Belew, R. Rakauskaite, and J. D. Dinman
Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae
Nucleic Acids Res., January 12, 2007; 35(1): 165 - 174.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
E. J. Slootweg, H. J.H.G. Keller, M. A. Hink, J. W. Borst, J. Bakker, and A. Schots
Fluorescent T7 display phages obtained by translational frameshift
Nucleic Acids Res., November 6, 2006; 34(20): e137 - e137.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
M. Bekaert, J. F Atkins, and P. V Baranov
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting
Bioinformatics, October 15, 2006; 22(20): 2463 - 2465.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
G. H. Jacobs, P. A. Stockwell, W. P. Tate, and C. M. Brown
Transterm--extended search facilities and improved integration with other databases
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D37 - D40.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
M. Bekaert, H. Richard, B. Prum, and J.-P. Rousset
Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae
Genome Res., October 1, 2005; 15(10): 1411 - 1420.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
P. H. Degnan, A. B. Lazarus, and J. J. Wernegreen
Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects
Genome Res., August 1, 2005; 15(8): 1023 - 1033.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
O. L. Gurvich, P. V. Baranov, R. F. Gesteland, and J. F. Atkins
Expression Levels Influence Ribosomal Frameshifting at the Tandem Rare Arginine Codons AGG_AGG and AGA_AGA in Escherichia coli
J. Bacteriol., June 15, 2005; 187(12): 4023 - 4032.
[Abstract] [Full Text] [PDF]


Home page
RNAHome page
P. V. BARANOV, R. F. GESTELAND, and J. F. ATKINS
P-site tRNA is a crucial initiator of ribosomal frameshifting
RNA, February 1, 2004; 10(2): 221 - 230.
[Abstract] [Full Text] [PDF]



Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.