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Nucleic Acids Research, 2003, Vol. 31, No. 13 3501-3502
© 2003 Oxford University Press

CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics

Davinder K. Kohli and Anand K. Bachhawat*

Institute of Microbial Technology, Sector 39-A, Chandigarh 160 036, India

*To whom correspondence should be addressed. Tel: +91 172690908; Fax: +91 172690632; Email: akbachhawat{at}hotmail.com

We describe a program (and a website) to reformat the ClustalX/ClustalW outputs to a format that is widely used in the presentation of sequence alignment data in SNP analysis and molecular systematic studies. This program, CLOURE, CLustal OUtput REformatter, takes the multiple sequence alignment file (nucleic acid or protein) generated from Clustal as input files. The CLOURE-D format presents the Clustal alignment in a format that highlights only the different nucleotides/residues relative to the first query sequence. The program has been written in Visual Basic and will run on a Windows platform. The downloadable program, as well as a web-based server which has also been developed, can be accessed at http://imtech.res.in/~anand/cloure.html.


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