Nucleic Acids Research, 2003, Vol. 31, No. 13 3593-3596
© 2003 Oxford University Press
Regulatory Sequence Analysis Tools
Service de Conformation des Macromolécules Biologiques et de Bioinformatique, Université Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium
*Tel: +32 2 650 5466; Fax: +32 2 650 5425; Email: jacques.van.helden{at}ulb.ac.be
The web resource Regulatory Sequence Analysis Tools (RSAT) (http://rsat.ulb.ac.be/rsat) offers a collection of software tools dedicated to the prediction of regulatory sites in non-coding DNA sequences. These tools include sequence retrieval, pattern discovery, pattern matching, genome-scale pattern matching, feature-map drawing, random sequence generation and other utilities. Alternative formats are supported for the representation of regulatory motifs (strings or position-specific scoring matrices) and several algorithms are proposed for pattern discovery. RSAT currently holds >100 fully sequenced genomes and these data are regularly updated from GenBank.
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