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Nucleic Acids Research, 2003, Vol. 31, No. 13 3767-3770
© 2003 Oxford University Press

RNA-related tools on the Bielefeld Bioinformatics Server

Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz1 and Robert Giegerich*

Technische Fakultät, Universität Bielefeld, Postfach 10 01 31, D-33501 Bielefeld 1 Zentrum für Bioinformatik, Universität Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany

To whom correspondence should be addressed. Tel: +49 521 1062913; Fax: +49 521 1066411; Email: robert{at}techfak.uni-bielefeld.de

We present four tools for the analysis of RNA secondary structure. They provide animated visualization of multiple structures, prediction of potential conformational switching, structure comparison (including local structure alignment) and prediction of structures potentially containing a certain kind of pseudoknots. All are available via the Bielefeld University Bioinformatics Server (http://bibiserv.techfak.uni-bielefeld.de).


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