Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (122K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Hulo, N.
Right arrow Articles by Bairoch, A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Hulo, N.
Right arrow Articles by Bairoch, A.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2004, Vol. 32, Database issue D134-D137
© 2004 Oxford University Press

Recent improvements to the PROSITE database

Nicolas Hulo*, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli1, Alexandre Gattiker, Edouard De Castro, Philipp Bucher2 and Amos Bairoch

Swiss Institute of Bioinformatics (SIB), CMU, University of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland, 1 Swiss Institute of Bioinformatics (SIB), Biozentrum, University of Basel, Klingelbergstrasse 50–70, CH-4056 Basel, Switzerland and 2 Swiss Institute of Bioinformatics (SIB), Swiss Institute for Experimental Cancer Research (ISREC), CH-1066 Epalinges/Lausanne, Switzerland

*To whom correspondence should be addressed. Tel: +41 21 379 58 72; Fax +41 21 379 58 58; Email: Nicolas.Hulo{at}isb-sib.ch

The PROSITE database consists of a large collection of biologically meaningful signatures that are described as patterns or profiles. Each signature is linked to documentation that provides useful biological information on the protein family, domain or functional site identified by the signature. The PROSITE web page has been redesigned and several tools have been implemented to help the user discover new conserved regions in their own proteins and to visualize domain arrangements. We also introduced the facility to search PDB with a PROSITE entry or a user’s pattern and visualize matched positions on 3D structures. The latest version of PROSITE (release 18.17 of November 30, 2003) contains 1676 entries. The database is accessible at http://www.expasy.org/prosite/.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 J. Immunol.Home page
T. Wang, S. Bird, A. Koussounadis, J. W. Holland, A. Carrington, J. Zou, and C. J. Secombes
Identification of a Novel IL-1 Cytokine Family Member in Teleost Fish
J. Immunol., July 15, 2009; 183(2): 962 - 974.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
M. Letek, A. A. Ocampo-Sosa, M. Sanders, U. Fogarty, T. Buckley, D. P. Leadon, P. Gonzalez, M. Scortti, W. G. Meijer, J. Parkhill, et al.
Evolution of the Rhodococcus equi vap Pathogenicity Island Seen through Comparison of Host-Associated vapA and vapB Virulence Plasmids
J. Bacteriol., September 1, 2008; 190(17): 5797 - 5805.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Spatuzza, M. Schiavone, E. Di Salle, E. Janda, M. Sardiello, G. Fiume, O. Fierro, M. Simonetta, N. Argiriou, R. Faraonio, et al.
Physical and functional characterization of the genetic locus of IBtk, an inhibitor of Bruton's tyrosine kinase: evidence for three protein isoforms of IBtk
Nucleic Acids Res., August 1, 2008; 36(13): 4402 - 4416.
[Abstract] [Full Text] [PDF]

Home page
 Brief Funct Genomic ProteomicHome page
C. Ansong, S. O. Purvine, J. N. Adkins, M. S. Lipton, and R. D. Smith
Proteogenomics: needs and roles to be filled by proteomics in genome annotation
Brief Funct Genomic Proteomic, March 10, 2008; (2008) eln010v1.
[Abstract] [Full Text] [PDF]

Home page
 Plant Cell PhysiolHome page
E. Mishima, A. Hosokawa, H. Imaizumi-Anraku, K. Saito, M. Kawaguchi, and K. Saeki
Requirement for Mesorhizobium loti Ornithine Transcarbamoylase for Successful Symbiosis with Lotus japonicus as Revealed by an Unexpected Long-Range Genome Deletion
Plant Cell Physiol., March 1, 2008; 49(3): 301 - 313.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
M. Brilli, R. Fani, and P. Lio
Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes
Brief Bioinform, January 1, 2008; 9(1): 34 - 45.
[Abstract] [Full Text] [PDF]

Home page
 Protein Eng Des SelHome page
G.A. Loset, E. Lunde, B. Bogen, O.H. Brekke, and I. Sandlie
Functional phage display of two murine {alpha}/{beta} T-cell receptors is strongly dependent on fusion format, mode and periplasmic folding assistance
Protein Eng. Des. Sel., October 9, 2007; (2007) gzm044v1.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
S. V. Balasingham, R. F. Collins, R. Assalkhou, H. Homberset, S. A. Frye, J. P. Derrick, and T. Tonjum
Interactions between the Lipoprotein PilP and the Secretin PilQ in Neisseria meningitidis
J. Bacteriol., August 1, 2007; 189(15): 5716 - 5727.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
L. Neff, S. Daher, P. Muzzin, U. Spenato, F. Gulacar, C. Gabay, and S. Bas
Molecular Characterization and Subcellular Localization of Macrophage Infectivity Potentiator, a Chlamydia trachomatis Lipoprotein
J. Bacteriol., July 1, 2007; 189(13): 4739 - 4748.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
J. E. Gewehr, V. Hintermair, and R. Zimmer
AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings
Bioinformatics, May 15, 2007; 23(10): 1203 - 1210.
[Abstract] [Full Text] [PDF]

Home page
 J. Exp. Biol.Home page
K. A. Suprenant, N. Bloom, J. Fang, and G. Lushington
The major vault protein is related to the toxic anion resistance protein (TelA) family
J. Exp. Biol., March 15, 2007; 210(6): 946 - 955.
[Abstract] [Full Text] [PDF]

Home page
 Antimicrob. Agents Chemother.Home page
H. Sletvold, P. J. Johnsen, G. S. Simonsen, B. Aasnaes, A. Sundsfjord, and K. M. Nielsen
Comparative DNA Analysis of Two vanA Plasmids from Enterococcus faecium Strains Isolated from Poultry and a Poultry Farmer in Norway
Antimicrob. Agents Chemother., February 1, 2007; 51(2): 736 - 739.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
E. R. Goncalves, H. Hara, D. Miyazawa, J. E. Davies, L. D. Eltis, and W. W. Mohn
Transcriptomic Assessment of Isozymes in the Biphenyl Pathway of Rhodococcus sp. Strain RHA1
Appl. Envir. Microbiol., September 1, 2006; 72(9): 6183 - 6193.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
I. Friedberg
Automated protein function prediction--the genomic challenge
Brief Bioinform, September 1, 2006; 7(3): 225 - 242.
[Abstract] [Full Text] [PDF]

Home page
 RNAHome page
M. Terribilini, J.-H. Lee, C. Yan, R. L. Jernigan, V. Honavar, and D. Dobbs
Prediction of RNA binding sites in proteins from amino acid sequence
RNA, August 1, 2006; 12(8): 1450 - 1462.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
K. Bryson, V. Loux, R. Bossy, P. Nicolas, S. Chaillou, M. van de Guchte, S. Penaud, E. Maguin, M. Hoebeke, P. Bessieres, et al.
AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system
Nucleic Acids Res., July 19, 2006; 34(12): 3533 - 3545.
[Abstract] [Full Text] [PDF]

Home page
 J. Gen. Virol.Home page
S. R. Escasa, H. A. M. Lauzon, A. C. Mathur, P. J. Krell, and B. M. Arif
Sequence analysis of the Choristoneura occidentalis granulovirus genome
J. Gen. Virol., July 1, 2006; 87(7): 1917 - 1933.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J.-H. Hung, H.-D. Huang, and T.-Y. Lee
ProKware: integrated software for presenting protein structural properties in protein tertiary structures.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W89 - W94.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
V. Neduva and R. B. Russell
DILIMOT: discovery of linear motifs in proteins.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W350 - W355.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
E. de Castro, C. J. A. Sigrist, A. Gattiker, V. Bulliard, P. S. Langendijk-Genevaux, E. Gasteiger, A. Bairoch, and N. Hulo
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W362 - W365.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
X. Sun, T. Morozova, and M. Sonnenfeld
Glial and Neuronal Functions of the Drosophila Homolog of the Human SWI/SNF Gene ATR-X (DATR-X) and the jing Zinc-Finger Gene Specify the Lateral Positioning of Longitudinal Glia and Axons
Genetics, July 1, 2006; 173(3): 1397 - 1415.
[Abstract] [Full Text] [PDF]

Home page
 J. Virol.Home page
S. Murray, C. L. Nilsson, J. T. Hare, M. R. Emmett, A. Korostelev, H. Ongley, A. G. Marshall, and M. S. Chapman
Characterization of the Capsid Protein Glycosylation of Adeno-Associated Virus Type 2 by High-Resolution Mass Spectrometry.
J. Virol., June 1, 2006; 80(12): 6171 - 6176.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
V. Moreau, C. Granier, S. Villard, D. Laune, and F. Molina
Discontinuous epitope prediction based on mimotope analysis
Bioinformatics, May 1, 2006; 22(9): 1088 - 1095.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
A. Raichaudhuri, R. Bhattacharyya, S. Chaudhuri, P. Chakrabarti, and M. DasGupta
Domain Analysis of a Groundnut Calcium-dependent Protein Kinase: NUCLEAR LOCALIZATION SEQUENCE IN THE JUNCTION DOMAIN IS COUPLED WITH NONCONSENSUS CALCIUM BINDING DOMAINS
J. Biol. Chem., April 14, 2006; 281(15): 10399 - 10409.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
M. M. Babu, M. L. Priya, A. T. Selvan, M. Madera, J. Gough, L. Aravind, and K. Sankaran
A Database of Bacterial Lipoproteins (DOLOP) with Functional Assignments to Predicted Lipoproteins.
J. Bacteriol., April 1, 2006; 188(8): 2761 - 2773.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
K. M. Short and T. C. Cox
Subclassification of the RBCC/TRIM Superfamily Reveals a Novel Motif Necessary for Microtubule Binding
J. Biol. Chem., March 31, 2006; 281(13): 8970 - 8980.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
A. Wietzorrek, H. Schwarz, C. Herrmann, and V. Braun
The Genome of the Novel Phage Rtp, with a Rosette-Like Tail Tip, Is Homologous to the Genome of Phage T1
J. Bacteriol., February 15, 2006; 188(4): 1419 - 1436.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
B. Titz, S. Thomas, S. V. Rajagopala, T. Chiba, T. Ito, and P. Uetz
Transcriptional activators in yeast
Nucleic Acids Res., February 7, 2006; 34(3): 955 - 967.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
S. V. V. Deevi and A. C. R. Martin
An extensible automated protein annotation tool: standardizing input and output using validated XML
Bioinformatics, February 1, 2006; 22(3): 291 - 296.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
N. Fernandez-Fuentes, B. Oliva, and A. Fiser
A supersecondary structure library and search algorithm for modeling loops in protein structures.
Nucleic Acids Res., January 1, 2006; 34(7): 2085 - 2097.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
C. D'Ambrosio, S. Arena, G. Fulcoli, M. H. Scheinfeld, D. Zhou, L. D'Adamio, and A. Scaloni
Hyperphosphorylation of JNK-interacting Protein 1, a Protein Associated with Alzheimer Disease
Mol. Cell. Proteomics, January 1, 2006; 5(1): 97 - 113.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
V. Matys, O. V. Kel-Margoulis, E. Fricke, I. Liebich, S. Land, A. Barre-Dirrie, I. Reuter, D. Chekmenev, M. Krull, K. Hornischer, et al.
TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D108 - D110.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. D. Finn, J. Mistry, B. Schuster-Bockler, S. Griffiths-Jones, V. Hollich, T. Lassmann, S. Moxon, M. Marshall, A. Khanna, R. Durbin, et al.
Pfam: clans, web tools and services
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D247 - D251.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Tripathy, V. N. Pandey, B. Fang, F. Salas, and B. M. Tyler
VMD: a community annotation database for oomycetes and microbial genomes
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D379 - D381.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Hartmann, D. Lu, J. Phillips, and T. J. Vision
Phytome: a platform for plant comparative genomics
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D724 - D730.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
W. Zhao, P. Canaran, R. Jurkuta, T. Fulton, J. Glaubitz, E. Buckler, J. Doebley, B. Gaut, M. Goodman, J. Holland, et al.
Panzea: a database and resource for molecular and functional diversity in the maize genome
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D752 - D757.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
M. Maiorino, A. Roveri, L. Benazzi, V. Bosello, P. Mauri, S. Toppo, S. C. E. Tosatto, and F. Ursini
Functional Interaction of Phospholipid Hydroperoxide Glutathione Peroxidase with Sperm Mitochondrion-associated Cysteine-rich Protein Discloses the Adjacent Cysteine Motif as a New Substrate of the Selenoperoxidase
J. Biol. Chem., November 18, 2005; 280(46): 38395 - 38402.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
C. J. A. Sigrist, E. De Castro, P. S. Langendijk-Genevaux, V. Le Saux, A. Bairoch, and N. Hulo
ProRule: a new database containing functional and structural information on PROSITE profiles
Bioinformatics, November 1, 2005; 21(21): 4060 - 4066.
[Abstract] [Full Text] [PDF]

Home page
 Infect. Immun.Home page
C.-Y. Hung, K. R. Seshan, J.-J. Yu, R. Schaller, J. Xue, V. Basrur, M. J. Gardner, and G. T. Cole
A Metalloproteinase of Coccidioides posadasii Contributes to Evasion of Host Detection
Infect. Immun., October 1, 2005; 73(10): 6689 - 6703.
[Abstract] [Full Text] [PDF]

Home page
 Infect. Immun.Home page
D. F. Schuijffel, P. C. M. van Empel, A. M. M. A. Pennings, J. P. M. van Putten, and P. J. M. Nuijten
Successful Selection of Cross-Protective Vaccine Candidates for Ornithobacterium rhinotracheale Infection
Infect. Immun., October 1, 2005; 73(10): 6812 - 6821.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. Biol.Home page
C.-W. Chang, H.-C. Chuang, C. Yu, T.-P. Yao, and H. Chen
Stimulation of GCMa Transcriptional Activity by Cyclic AMP/Protein Kinase A Signaling Is Attributed to CBP-Mediated Acetylation of GCMa
Mol. Cell. Biol., October 1, 2005; 25(19): 8401 - 8414.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
M. Falb, F. Pfeiffer, P. Palm, K. Rodewald, V. Hickmann, J. Tittor, and D. Oesterhelt
Living with two extremes: Conclusions from the genome sequence of Natronomonas pharaonis
Genome Res., October 1, 2005; 15(10): 1336 - 1343.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
A. Romualdi, R. Siddiqui, G. Glockner, R. Lehmann, and J. Suhnel
GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness
Bioinformatics, September 15, 2005; 21(18): 3669 - 3671.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. E. Donald and E. I. Shakhnovich
Predicting specificity-determining residues in two large eukaryotic transcription factor families
Nucleic Acids Res., August 5, 2005; 33(14): 4455 - 4465.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. Biol.Home page
T. Hoang, W.-T. Peng, E. Vanrobays, N. Krogan, S. Hiley, A. L. Beyer, Y. N. Osheim, J. Greenblatt, T. R. Hughes, and D. L. J. Lafontaine
Esf2p, a U3-Associated Factor Required for Small-Subunit Processome Assembly and Compaction
Mol. Cell. Biol., July 1, 2005; 25(13): 5523 - 5534.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
E. J. Alm, K. H. Huang, M. N. Price, R. P. Koche, K. Keller, I. L. Dubchak, and A. P. Arkin
The MicrobesOnline Web site for comparative genomics
Genome Res., July 1, 2005; 15(7): 1015 - 1022.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
E. Quevillon, V. Silventoinen, S. Pillai, N. Harte, N. Mulder, R. Apweiler, and R. Lopez
InterProScan: protein domains identifier
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W116 - W120.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G. Ausiello, A. Zanzoni, D. Peluso, A. Via, and M. Helmer-Citterich
pdbFun: mass selection and fast comparison of annotated PDB residues
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W133 - W137.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. Gutman, C. Berezin, R. Wollman, Y. Rosenberg, and N. Ben-Tal
QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W255 - W261.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G. H. Van Domselaar, P. Stothard, S. Shrivastava, J. A. Cruz, A. Guo, X. Dong, P. Lu, D. Szafron, R. Greiner, and D. S. Wishart
BASys: a web server for automated bacterial genome annotation
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W455 - W459.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
K. Wang and R. Samudrala
FSSA: a novel method for identifying functional signatures from structural alignments
Bioinformatics, July 1, 2005; 21(13): 2969 - 2977.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
J. E. Donald and E. I. Shakhnovich
Determining functional specificity from protein sequences
Bioinformatics, June 1, 2005; 21(11): 2629 - 2635.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Biol. CellHome page
C. P. Chia, S. Gomathinayagam, R. J. Schmaltz, and L. K. Smoyer
Glycoprotein gp130 of Dictyostelium discoideum Influences Macropinocytosis and Adhesion
Mol. Biol. Cell, June 1, 2005; 16(6): 2681 - 2693.
[Abstract] [Full Text] [PDF]

Home page
 MicrobiologyHome page
D. S. Tuckwell, M. J. Nicholson, C. S. McSweeney, M. K. Theodorou, and J. L. Brookman
The rapid assignment of ruminal fungi to presumptive genera using ITS1 and ITS2 RNA secondary structures to produce group-specific fingerprints
Microbiology, May 1, 2005; 151(5): 1557 - 1567.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
K. Coeytaux and A. Poupon
Prediction of unfolded segments in a protein sequence based on amino acid composition
Bioinformatics, May 1, 2005; 21(9): 1891 - 1900.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
M. Schneider, A. Bairoch, C. H. Wu, and R. Apweiler
Plant Protein Annotation in the UniProt Knowledgebase
Plant Physiology, May 1, 2005; 138(1): 59 - 66.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
J. Weiner 3rd, G. Thomas, and E. Bornberg-Bauer
Rapid motif-based prediction of circular permutations in multi-domain proteins
Bioinformatics, April 1, 2005; 21(7): 932 - 937.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
S. A. Rahman, P. Advani, R. Schunk, R. Schrader, and D. Schomburg
Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC)
Bioinformatics, April 1, 2005; 21(7): 1189 - 1193.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
J. Hou, S.-R. Jun, C. Zhang, and S.-H. Kim
From The Cover: Global mapping of the protein structure space and application in structure-based inference of protein function
PNAS, March 8, 2005; 102(10): 3651 - 3656.
[Abstract] [Full Text] [PDF]

Home page
 MicrobiologyHome page
T. P. Stinear, M. J. Pryor, J. L. Porter, and S. T. Cole
Functional analysis and annotation of the virulence plasmid pMUM001 from Mycobacterium ulcerans
Microbiology, March 1, 2005; 151(3): 683 - 692.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
J. L. Gardy, M. R. Laird, F. Chen, S. Rey, C. J. Walsh, M. Ester, and F. S. L. Brinkman
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
Bioinformatics, March 1, 2005; 21(5): 617 - 623.
[Abstract] [Full Text] [PDF]

Home page
 DevelopmentHome page
C. C. Carles, D. Choffnes-Inada, K. Reville, K. Lertpiriyapong, and J. C. Fletcher
ULTRAPETALA1 encodes a SAND domain putative transcriptional regulator that controls shoot and floral meristem activity in Arabidopsis
Development, March 1, 2005; 132(5): 897 - 911.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
D. H. Haft, J. D. Selengut, L. M. Brinkac, N. Zafar, and O. White
Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics
Bioinformatics, February 1, 2005; 21(3): 293 - 306.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. Bairoch, R. Apweiler, C. H. Wu, W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, et al.
The Universal Protein Resource (UniProt)
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D154 - D159.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. Heger, C. A. Wilton, A. Sivakumar, and L. Holm
ADDA: a domain database with global coverage of the protein universe
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D188 - D191.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Abhiman and E. L. L. Sonnhammer
FunShift: a database of function shift analysis on protein subfamilies
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D197 - D200.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Bru, E. Courcelle, S. Carrere, Y. Beausse, S. Dalmar, and D. Kahn
The ProDom database of protein domain families: more emphasis on 3D
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D212 - D215.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
T. Meinel, A. Krause, H. Luz, M. Vingron, and E. Staub
The SYSTERS Protein Family Database in 2005
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D226 - D229.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. A. Laskowski, V. V. Chistyakov, and J. M. Thornton
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D266 - D268.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
P. Stothard, G. Van Domselaar, S. Shrivastava, A. Guo, B. O'Neill, J. Cruz, M. Ellison, and D. S. Wishart
BacMap: an interactive picture atlas of annotated bacterial genomes
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D317 - D320.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
W.-C. Kao, Y.-R. Chen, E. C. Yi, H. Lee, Q. Tian, K.-M. Wu, S.-F. Tsai, S. S.-F. Yu, Y.-J. Chen, R. Aebersold, et al.
Quantitative Proteomic Analysis of Metabolic Regulation by Copper Ions in Methylococcus capsulatus (Bath)
J. Biol. Chem., December 3, 2004; 279(49): 51554 - 51560.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
G. Rhodes, J. Parkhill, C. Bird, K. Ambrose, M. C. Jones, G. Huys, J. Swings, and R. W. Pickup
Complete Nucleotide Sequence of the Conjugative Tetracycline Resistance Plasmid pFBAOT6, a Member of a Group of IncU Plasmids with Global Ubiquity
Appl. Envir. Microbiol., December 1, 2004; 70(12): 7497 - 7510.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. Y. Galperin and E. V. Koonin
'Conserved hypothetical' proteins: prioritization of targets for experimental study
Nucleic Acids Res., October 12, 2004; 32(18): 5452 - 5463.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
N. Harte, V. Silventoinen, E. Quevillon, S. Robinson, K. Kallio, X. Fustero, P. Patel, P. Jokinen, and R. Lopez
Public web-based services from the European Bioinformatics Institute
Nucleic Acids Res., July 1, 2004; 32(suppl_2): W3 - W9.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Rigali, M. Schlicht, P. Hoskisson, H. Nothaft, M. Merzbacher, B. Joris, and F. Titgemeyer
Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships
Nucleic Acids Res., June 24, 2004; 32(11): 3418 - 3426.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. Apweiler, A. Bairoch, C. H. Wu, W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, et al.
UniProt: the Universal Protein knowledgebase
Nucleic Acids Res., January 1, 2004; 32(90001): D115 - 119.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.