Nucleic Acids Research, 2004, Vol. 32, Database issue D138-D141
© 2004 Oxford University Press
The Pfam protein families database
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK, 1 Center for Genomics and Bioinformatics, Karolinska Institutet, S-171 77 Stockholm, Sweden and 2 Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, St Louis, MO 63110, USA
*To whom correspondence should be addressed. Tel: +44 1223 494950; Fax: +44 1223 494919; Email: agb{at}sanger.ac.uk
Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations include modelling of discontinuous domains allowing Pfam domain definitions to be closer to those found in structure databases. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://Pfam.cgb.ki.se/).
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  M. Yu. Lobanov, B. A. Shoemaker, S. O. Garbuzynskiy, J. H. Fong, A. R. Panchenko, and O. V. Galzitskaya ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder Nucleic Acids Res., November 11, 2009; (2009) gkp963v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Meyer, R. Overbeek, and A. Rodriguez FIGfams: yet another set of protein families Nucleic Acids Res., November 1, 2009; 37(20): 6643 - 6654. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Reef, S. Dunn, O. Levy, S. Dove, E. Shemesh, I. Brickner, W. Leggat, and O. Hoegh-Guldberg Photoreactivation is the main repair pathway for UV-induced DNA damage in coral planulae J. Exp. Biol., September 1, 2009; 212(17): 2760 - 2766. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Zou, M. D. Lehti-Shiu, F. Thibaud-Nissen, T. Prakash, C. R. Buell, and S.-H. Shiu Evolutionary and Expression Signatures of Pseudogenes in Arabidopsis and Rice Plant Physiology, September 1, 2009; 151(1): 3 - 15. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Herold, J. C. Paton, and A. W. Paton Sab, a Novel Autotransporter of Locus of Enterocyte Effacement-Negative Shiga-Toxigenic Escherichia coli O113:H21, Contributes to Adherence and Biofilm Formation Infect. Immun., August 1, 2009; 77(8): 3234 - 3243. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. M. Rodriguez-Minguela, J. H. A. Apajalahti, B. Chai, J. R. Cole, and J. M. Tiedje Worldwide Prevalence of Class 2 Integrases outside the Clinical Setting Is Associated with Human Impact Appl. Envir. Microbiol., August 1, 2009; 75(15): 5100 - 5110. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 H. Li, X. Xing, G. Ding, Q. Li, C. Wang, L. Xie, R. Zeng, and Y. Li SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications Mol. Cell. Proteomics, August 1, 2009; 8(8): 1839 - 1849. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. S. Kassahn, V. T. Dang, S. J. Wilkins, A. C. Perkins, and M. A. Ragan Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates Genome Res., August 1, 2009; 19(8): 1404 - 1418. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. A. Champion, L. Kundrat, L. Regan, and S. J. Baserga A structural model for the HAT domain of Utp6 incorporating bioinformatics and genetics Protein Eng. Des. Sel., July 1, 2009; 22(7): 431 - 439. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. H. Degnan, Y. Yu, N. Sisneros, R. A. Wing, and N. A. Moran Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors PNAS, June 2, 2009; 106(22): 9063 - 9068. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Moosajee, M. Tulloch, R. A. Baron, C. Y. Gregory-Evans, J. B. Pereira-Leal, and M. C. Seabra Single choroideremia Gene in Nonmammalian Vertebrates Explains Early Embryonic Lethality of the Zebrafish Model of Choroideremia Invest. Ophthalmol. Vis. Sci., June 1, 2009; 50(6): 3009 - 3016. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. J. A. Cock, T. Antao, J. T. Chang, B. A. Chapman, C. J. Cox, A. Dalke, I. Friedberg, T. Hamelryck, F. Kauff, B. Wilczynski, et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics Bioinformatics, June 1, 2009; 25(11): 1422 - 1423. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Zhang, A. Lorence, H. A. Gruszewski, B. I. Chevone, and C. L. Nessler AMR1, an Arabidopsis Gene That Coordinately and Negatively Regulates the Mannose/L-Galactose Ascorbic Acid Biosynthetic Pathway Plant Physiology, June 1, 2009; 150(2): 942 - 950. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Kawabe, T. Morio, J. L. James, A. R. Prescott, Y. Tanaka, and P. Schaap Activated cAMP receptors switch encystation into sporulation PNAS, April 28, 2009; 106(17): 7089 - 7094. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. M. Alleyne, L. Pena-Castillo, G. Badis, S. Talukder, M. F. Berger, A. R. Gehrke, A. A. Philippakis, M. L. Bulyk, Q. D. Morris, and T. R. Hughes Predicting the binding preference of transcription factors to individual DNA k-mers Bioinformatics, April 15, 2009; 25(8): 1012 - 1018. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Hou, K. Xie, J. Yao, Z. Qi, and L. Xiong A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance PNAS, April 14, 2009; 106(15): 6410 - 6415. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Klasson, J. Westberg, P. Sapountzis, K. Naslund, Y. Lutnaes, A. C. Darby, Z. Veneti, L. Chen, H. R. Braig, R. Garrett, et al. The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans PNAS, April 7, 2009; 106(14): 5725 - 5730. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. D. Hooper, I. J. Anderson, A. Pati, D. Dalevi, K. Mavromatis, and N. C. Kyrpides Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach Nucleic Acids Res., April 1, 2009; 37(7): 2096 - 2104. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Ruiz, Y. Coute, B. Sanchez, C. G. de los Reyes-Gavilan, J.-C. Sanchez, and A. Margolles The cell-envelope proteome of Bifidobacterium longum in an in vitro bile environment Microbiology, March 1, 2009; 155(3): 957 - 967. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Schuette, A. J. Wood, M. Geisler, J. Geisler-Lee, R. Ligrone, and K. S. Renzaglia Novel localization of callose in the spores of Physcomitrella patens and phylogenomics of the callose synthase gene family Ann. Bot., March 1, 2009; 103(5): 749 - 756. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Chandran, Y. C. Tai, G. Hather, J. Dewdney, C. Denoux, D. G. Burgess, F. M. Ausubel, T. P. Speed, and M. C. Wildermuth Temporal Global Expression Data Reveal Known and Novel Salicylate-Impacted Processes and Regulators Mediating Powdery Mildew Growth and Reproduction on Arabidopsis Plant Physiology, March 1, 2009; 149(3): 1435 - 1451. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Sorokin, K. Severinov, and M. S. Gelfand Systematic prediction of control proteins and their DNA binding sites Nucleic Acids Res., February 1, 2009; 37(2): 441 - 451. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Huang and J. S. Bader Precision and recall estimates for two-hybrid screens Bioinformatics, February 1, 2009; 25(3): 372 - 378. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Brochier-Armanet, E. Talla, and S. Gribaldo The Multiple Evolutionary Histories of Dioxygen Reductases: Implications for the Origin and Evolution of Aerobic Respiration Mol. Biol. Evol., February 1, 2009; 26(2): 285 - 297. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Kashiyama, T. Seki, H. Numata, and S. G. Goto Molecular Characterization of Visual Pigments in Branchiopoda and the Evolution of Opsins in Arthropoda Mol. Biol. Evol., February 1, 2009; 26(2): 299 - 311. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. H. Hur, K. Van Doninck, M. L. Mandigo, and M. Meselson Degenerate Tetraploidy Was Established Before Bdelloid Rotifer Families Diverged Mol. Biol. Evol., February 1, 2009; 26(2): 375 - 383. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. D. King, E. Vinogradov, A. Preston, J. Li, and D. J. Maskell Post-assembly Modification of Bordetella bronchiseptica O Polysaccharide by a Novel Periplasmic Enzyme Encoded by wbmE J. Biol. Chem., January 16, 2009; 284(3): 1474 - 1483. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Pina, A. Olvera, A. Barcelo, and A. Bensaid Trimeric Autotransporters of Haemophilus parasuis: Generation of an Extensive Passenger Domain Repertoire Specific for Pathogenic Strains J. Bacteriol., January 15, 2009; 191(2): 576 - 587. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Martin, S. Abubucker, T. Wylie, Y. Yin, Z. Wang, and M. Mitreva Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics Nucleic Acids Res., January 1, 2009; 37(suppl_1): D571 - D578. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Ahmad, F.-M. Boisvert, P. Gregor, A. Cobley, and A. I. Lamond NOPdb: Nucleolar Proteome Database--2008 update Nucleic Acids Res., January 1, 2009; 37(suppl_1): D181 - D184. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. L. Mallam, E. R. Morris, and S. E. Jackson Exploring knotting mechanisms in protein folding PNAS, December 2, 2008; 105(48): 18740 - 18745. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. M. Mittelmeier, P. Berthold, A. Danon, M. R. Lamb, A. Levitan, M. E. Rice, and C. L. Dieckmann C2 Domain Protein MIN1 Promotes Eyespot Organization in Chlamydomonas reinhardtii Eukaryot. Cell, December 1, 2008; 7(12): 2100 - 2112. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. H. Degnan and N. A. Moran Diverse Phage-Encoded Toxins in a Protective Insect Endosymbiont Appl. Envir. Microbiol., November 1, 2008; 74(21): 6782 - 6791. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. A. Mikolajczak, H. Silva-Rivera, X. Peng, A. S. Tarun, N. Camargo, V. Jacobs-Lorena, T. M. Daly, L. W. Bergman, P. de la Vega, J. Williams, et al. Distinct Malaria Parasite Sporozoites Reveal Transcriptional Changes That Cause Differential Tissue Infection Competence in the Mosquito Vector and Mammalian Host Mol. Cell. Biol., October 15, 2008; 28(20): 6196 - 6207. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Bromberg, G. Yachdav, and B. Rost SNAP predicts effect of mutations on protein function Bioinformatics, October 15, 2008; 24(20): 2397 - 2398. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. J. Huang, D. Hang, L. J. Lu, L. Tong, M. B. Gerstein, and G. T. Montelione Targeting the Human Cancer Pathway Protein Interaction Network by Structural Genomics Mol. Cell. Proteomics, October 1, 2008; 7(10): 2048 - 2060. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Morcos, C. Lamanna, M. Sikora, and J. Izaguirre Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference Bioinformatics, October 1, 2008; 24(19): 2265 - 2266. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. V. Ritchie, S. van Es, C. Fouquet, and P. Schaap From Drought Sensing to Developmental Control: Evolution of Cyclic AMP Signaling in Social Amoebas Mol. Biol. Evol., October 1, 2008; 25(10): 2109 - 2118. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Akiva, Z. Itzhaki, and H. Margalit Built-in loops allow versatility in domain-domain interactions: Lessons from self-interacting domains PNAS, September 9, 2008; 105(36): 13292 - 13297. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Letek, A. A. Ocampo-Sosa, M. Sanders, U. Fogarty, T. Buckley, D. P. Leadon, P. Gonzalez, M. Scortti, W. G. Meijer, J. Parkhill, et al. Evolution of the Rhodococcus equi vap Pathogenicity Island Seen through Comparison of Host-Associated vapA and vapB Virulence Plasmids J. Bacteriol., September 1, 2008; 190(17): 5797 - 5805. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L.-R. Zeng, C. H. Park, R.C. Venu, J. Gough, and G.-L. Wang Classification, Expression Pattern, and E3 Ligase Activity Assay of Rice U-Box-Containing Proteins Mol Plant, September 1, 2008; 1(5): 800 - 815. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Greiner, X. Wang, R. G. Herrmann, U. Rauwolf, K. Mayer, G. Haberer, and J. Meurer The Complete Nucleotide Sequences of the 5 Genetically Distinct Plastid Genomes of Oenothera, Subsection Oenothera: II. A Microevolutionary View Using Bioinformatics and Formal Genetic Data Mol. Biol. Evol., September 1, 2008; 25(9): 2019 - 2030. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Yang, M. Gao, C. Xu, J. Gao, S. Deshpande, S. Lin, B. A. Roe, and H. Zhu Alfalfa benefits from Medicago truncatula: The RCT1 gene from M. truncatula confers broad-spectrum resistance to anthracnose in alfalfa PNAS, August 26, 2008; 105(34): 12164 - 12169. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Dalevi, N. N. Ivanova, K. Mavromatis, S. D. Hooper, E. Szeto, P. Hugenholtz, N. C. Kyrpides, and V. M. Markowitz Annotation of metagenome short reads using proxygenes Bioinformatics, August 15, 2008; 24(16): i7 - i13. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Pandey, M. Koyuturk, S. Subramaniam, and A. Grama Functional coherence in domain interaction networks Bioinformatics, August 15, 2008; 24(16): i28 - i34. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Liu, A. Nauta, C. Francke, and R. J. Siezen Comparative Genomics of Enzymes in Flavor-Forming Pathways from Amino Acids in Lactic Acid Bacteria Appl. Envir. Microbiol., August 1, 2008; 74(15): 4590 - 4600. [Full Text] [PDF]
|
|
|
|
 |
|
 N. Deshpande, M. R Wilkins, N. Packer, and H. Nevalainen Protein glycosylation pathways in filamentous fungi Glycobiology, August 1, 2008; 18(8): 626 - 637. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Schilde, K. Lutter, R. Kissmehl, and H. Plattner Molecular Identification of a SNAP-25-Like SNARE Protein in Paramecium Eukaryot. Cell, August 1, 2008; 7(8): 1387 - 1402. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Mor-Cohen, N. Rosenberg, M. Landau, J. Lahav, and U. Seligsohn Specific Cysteines in {beta}3 Are Involved in Disulfide Bond Exchange-dependent and -independent Activation of {alpha}IIb{beta}3 J. Biol. Chem., July 11, 2008; 283(28): 19235 - 19244. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Wong and M. A. Ragan MACHOS: Markov clusters of homologous subsequences Bioinformatics, July 1, 2008; 24(13): i77 - i85. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Pei, M. Tang, and N. V. Grishin PROMALS3D web server for accurate multiple protein sequence and structure alignments Nucleic Acids Res., July 1, 2008; 36(suppl_2): W30 - W34. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. von Grotthuss, D. Plewczynski, G. Vriend, and L. Rychlewski 3D-Fun: predicting enzyme function from structure Nucleic Acids Res., July 1, 2008; 36(suppl_2): W303 - W307. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. A. Anwar, S. Kralj, M. J. E. C. van der Maarel, and L. Dijkhuizen The Probiotic Lactobacillus johnsonii NCC 533 Produces High-Molecular-Mass Inulin from Sucrose by Using an Inulosucrase Enzyme Appl. Envir. Microbiol., June 1, 2008; 74(11): 3426 - 3433. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. J. Sanderson, D. Boss, D. Chen, K. A. Cranston, and A. Wehe The PhyLoTA Browser: Processing GenBank for Molecular Phylogenetics Research Syst Biol, June 1, 2008; 57(3): 335 - 346. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Zebisch and N. Strater Structural insight into signal conversion and inactivation by NTPDase2 in purinergic signaling PNAS, May 13, 2008; 105(19): 6882 - 6887. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. D. Schrag, S. Jiralerspong, M. Banville, M. L. Jaramillo, and M. D. O'Connor-McCourt The crystal structure and dimerization interface of GADD45{gamma} PNAS, May 6, 2008; 105(18): 6566 - 6571. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Balado, C. R. Osorio, and M. L. Lemos Biosynthetic and regulatory elements involved in the production of the siderophore vanchrobactin in Vibrio anguillarum Microbiology, May 1, 2008; 154(5): 1400 - 1413. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. F. Aubert, R. S. Flannagan, and M. A. Valvano A Novel Sensor Kinase-Response Regulator Hybrid Controls Biofilm Formation and Type VI Secretion System Activity in Burkholderia cenocepacia Infect. Immun., May 1, 2008; 76(5): 1979 - 1991. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Pilhofer, K. Rappl, C. Eckl, A. P. Bauer, W. Ludwig, K.-H. Schleifer, and G. Petroni Characterization and Evolution of Cell Division and Cell Wall Synthesis Genes in the Bacterial Phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and Phylogenetic Comparison with rRNA Genes J. Bacteriol., May 1, 2008; 190(9): 3192 - 3202. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Lloret-Llinares, C. Carre, A. Vaquero, N. de Olano, and F. Azorin Characterization of Drosophila melanogaster JmjC+N histone demethylases Nucleic Acids Res., May 1, 2008; 36(9): 2852 - 2863. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. L. Zimmer, Z. Fei, and D. B. Stern Genome-Based Analysis of Chlamydomonas reinhardtii Exoribonucleases and Poly(A) Polymerases Predicts Unexpected Organellar and Exosomal Features Genetics, May 1, 2008; 179(1): 125 - 136. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Xu, J. Wu, J. Xiao, Y. Tan, Q. Bao, F. Zhao, and X. Li PlasmoGF: an integrated system for comparative genomics and phylogenetic analysis of Plasmodium gene families Bioinformatics, May 1, 2008; 24(9): 1217 - 1220. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Horan, C. Jang, J. Bailey-Serres, R. Mittler, C. Shelton, J. F. Harper, J.-K. Zhu, J. C. Cushman, M. Gollery, and T. Girke Annotating Genes of Known and Unknown Function by Large-Scale Coexpression Analysis Plant Physiology, May 1, 2008; 147(1): 41 - 57. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Neumann, F. Spinozzi, R. Sinibaldi, F. Rustichelli, M. Potter, and A. Steinbuchel Binding of the Major Phasin, PhaP1, from Ralstonia eutropha H16 to Poly(3-Hydroxybutyrate) Granules J. Bacteriol., April 15, 2008; 190(8): 2911 - 2919. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Ye, G. Vriend, and A. P. IJzerman Tracing evolutionary pressure Bioinformatics, April 1, 2008; 24(7): 908 - 915. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. Magnani and S. Hake KNOX Lost the OX: The Arabidopsis KNATM Gene Defines a Novel Class of KNOX Transcriptional Regulators Missing the Homeodomain PLANT CELL, April 1, 2008; 20(4): 875 - 887. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. De La Chesnaye, B. Kerr, A. Paredes, H. Merchant-Larios, J. P. Mendez, and S. R. Ojeda Fbxw15/Fbxo12J Is an F-Box Protein-Encoding Gene Selectively Expressed in Oocytes of the Mouse Ovary Biol Reprod, April 1, 2008; 78(4): 714 - 725. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Ansong, S. O. Purvine, J. N. Adkins, M. S. Lipton, and R. D. Smith Proteogenomics: needs and roles to be filled by proteomics in genome annotation Brief Funct Genomic Proteomic, March 10, 2008; (2008) eln010v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. K. P. Lau, G. K. M. Wong, M. W. S. Li, P. C. Y. Woo, and K.-y. Yuen Distribution and molecular characterization of tetracycline resistance in Laribacter hongkongensis J. Antimicrob. Chemother., March 1, 2008; 61(3): 488 - 497. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Abedin and N. King The Premetazoan Ancestry of Cadherins Science, February 15, 2008; 319(5865): 946 - 948. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Bengtsson and H. Otto LUMA interacts with emerin and influences its distribution at the inner nuclear membrane J. Cell Sci., February 15, 2008; 121(4): 536 - 548. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Kunin, S. He, F. Warnecke, S. B. Peterson, H. Garcia Martin, M. Haynes, N. Ivanova, L. L. Blackall, M. Breitbart, F. Rohwer, et al. A bacterial metapopulation adapts locally to phage predation despite global dispersal Genome Res., February 1, 2008; 18(2): 293 - 297. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Kerk, G. Templeton, and G. B.G. Moorhead Evolutionary Radiation Pattern of Novel Protein Phosphatases Revealed by Analysis of Protein Data from the Completely Sequenced Genomes of Humans, Green Algae, and Higher Plants Plant Physiology, February 1, 2008; 146(2): 351 - 367. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. J. Siezen, M. J. C. Starrenburg, J. Boekhorst, B. Renckens, D. Molenaar, and J. E. T. van Hylckama Vlieg Genome-Scale Genotype-Phenotype Matching of Two Lactococcus lactis Isolates from Plants Identifies Mechanisms of Adaptation to the Plant Niche Appl. Envir. Microbiol., January 15, 2008; 74(2): 424 - 436. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Cheng, B.-H. Kim, and N. V. Grishin MALISAM: a database of structurally analogous motifs in proteins Nucleic Acids Res., January 11, 2008; 36(suppl_1): D211 - D217. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. M.C. Robb, E. Ross, and A. S. Alvarado SmedGD: the Schmidtea mediterranea genome database Nucleic Acids Res., January 11, 2008; 36(suppl_1): D599 - D606. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. M. Markowitz, N. N. Ivanova, E. Szeto, K. Palaniappan, K. Chu, D. Dalevi, I-M. A. Chen, Y. Grechkin, I. Dubchak, I. Anderson, et al. IMG/M: a data management and analysis system for metagenomes Nucleic Acids Res., January 11, 2008; 36(suppl_1): D534 - D538. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. M. Markowitz, E. Szeto, K. Palaniappan, Y. Grechkin, K. Chu, I-M. A. Chen, I. Dubchak, I. Anderson, A. Lykidis, K. Mavromatis, et al. The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions Nucleic Acids Res., January 11, 2008; 36(suppl_1): D528 - D533. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Rossignol, P. Lechat, C. Cuomo, Q. Zeng, I. Moszer, and C. d'Enfert CandidaDB: a multi-genome database for Candida species and related Saccharomycotina Nucleic Acids Res., January 11, 2008; 36(suppl_1): D557 - D561. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Brilli, R. Fani, and P. Lio Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes Brief Bioinform, January 1, 2008; 9(1): 34 - 45. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Hashimoto, A. C. Yoshizawa, S. Okuda, K. Kuma, S. Goto, and M. Kanehisa The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes J. Lipid Res., January 1, 2008; 49(1): 183 - 191. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. J. Cragnolini and J. A. L. de Castro Identification of Endogenously Presented Peptides from Chlamydia trachomatis with High Homology to Human Proteins and to a Natural Self-ligand of HLA-B27 Mol. Cell. Proteomics, January 1, 2008; 7(1): 170 - 180. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. L. Cantarel, I. Korf, S. M.C. Robb, G. Parra, E. Ross, B. Moore, C. Holt, A. Sanchez Alvarado, and M. Yandell MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes Genome Res., January 1, 2008; 18(1): 188 - 196. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Molina and E. van Nimwegen Universal patterns of purifying selection at noncoding positions in bacteria Genome Res., January 1, 2008; 18(1): 148 - 160. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Landau, K. Herz, E. Padan, and N. Ben-Tal Model Structure of the Na+/H+ Exchanger 1 (NHE1): FUNCTIONAL AND CLINICAL IMPLICATIONS J. Biol. Chem., December 28, 2007; 282(52): 37854 - 37863. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. N. Chua, W.-K. Sung, and L. Wong An efficient strategy for extensive integration of diverse biological data for protein function prediction Bioinformatics, December 15, 2007; 23(24): 3364 - 3373. [Abstract] [Full Text] [PDF]
|
|