Nucleic Acids Research, 2004, Vol. 32, Database issue D258-D261
© 2004 Oxford University Press
The Gene Ontology (GO) database and informatics resource
GO-EBI, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
*Correspondence should be addressed to GO-EBI, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. Tel. +44 1223 494667; Fax: +44 1223 494468; Email: midori{at}ebi.ac.uk
*Current members of the GO Consortium are: M. A. Harris, J. Clark, A. Ireland, J. Lomax (GO-EBI, Hinxton, UK); M. Ashburner, R. Foulger (FlyBase, Department of Genetics, University of Cambridge, Cambridge, UK); K. Eilbeck, S. Lewis, B. Marshall, C. Mungall, J. Richter, G. M. Rubin (BDGP, UC-Berkeley, Berkeley, CA, USA), J. A. Blake, C. Bult, M. Dolan, H. Drabkin, J. T. Eppig, D. P. Hill, L. Ni, M. Ringwald (MGI, Jackson Laboratory, Bar Harbor, ME, USA); R. Balakrishnan, J. M. Cherry, K. R. Christie, M. C. Costanzo, S. S. Dwight, S. Engel, D. G. Fisk, J. E. Hirschman, E. L. Hong, R. S. Nash, A. Sethuraman, C. L. Theesfeld (SGD, Department of Genetics, Stanford University, Stanford, CA, USA); D. Botstein, K. Dolinski, B. Feierbach (Genomics Institute, Princeton University, Princeton, NJ, USA); T. Berardini, S. Mundodi, S. Y. Rhee (TAIR, Carnegie Institution, Department of Plant Biology, Stanford, CA, USA); R. Apweiler, D. Barrell, E. Camon, E. Dimmer, V. Lee (GOA database, UniProt, EBI, Hinxton, UK); R. Chisholm, P. Gaudet, W. Kibbe (DictyBase, Northwestern University, Chicago, IL, USA); R. Kishore, E. M. Schwarz, P. Sternberg (WormBase, California Institute of Technology, Pasadena, CA, USA); M. Gwinn, L. Hannick, J. Wortman (Institute for Genome Research, Rockville, MD, USA); M. Berriman, V. Wood (Wellcome Trust Sanger Institute, Hinxton, UK); N. de la Cruz, P. Tonellato (RGD, Medical College of Wisconsin, Milwaukee, WI, USA); P. Jaiswal (Gramene, Department of Plant Breeding, Cornell University, Ithaca, NY, USA); T. Seigfried (Maize DB, Iowa State University, Ames, IA, USA); R. White (Incyte Genomics, Palo Alto, CA, USA).
The Gene Ontology (GO) project (http://www. geneontology.org/) provides structured, controlled vocabularies and classifications that cover several domains of molecular and cellular biology and are freely available for community use in the annotation of genes, gene products and sequences. Many model organism databases and genome annotation groups use the GO and contribute their annotation sets to the GO resource. The GO database integrates the vocabularies and contributed annotations and provides full access to this information in several formats. Members of the GO Consortium continually work collectively, involving outside experts as needed, to expand and update the GO vocabularies. The GO Web resource also provides access to extensive documentation about the GO project and links to applications that use GO data for functional analyses.
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C. R. Bush, J. M. Havens, B. M. Necela, W. Su, L. Chen, M. Yanagisawa, P. Z. Anastasiadis, R. Guerra, B. A. Luxon, and E. A. Thompson Functional Genomic Analysis Reveals Cross-talk between Peroxisome Proliferator-activated Receptor {gamma} and Calcium Signaling in Human Colorectal Cancer Cells J. Biol. Chem., August 10, 2007; 282(32): 23387 - 23401. [Abstract] [Full Text] [PDF]
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S. Sudheer and J. Adjaye Functional genomics of human pre-implantation development Brief Funct Genomic Proteomic, July 31, 2007; (2007) elm012v1. [Abstract] [Full Text] [PDF]
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Y.-C. Chen, Y.-S. Lo, W.-C. Hsu, and J.-M. Yang 3D-partner: a web server to infer interacting partners and binding models Nucleic Acids Res., July 13, 2007; 35(suppl_2): W561 - W567. [Abstract] [Full Text] [PDF]
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J. Degenhardt, M. Haubrock, J. Donitz, E. Wingender, and T. Crass DEEP--A tool for differential expression effector prediction Nucleic Acids Res., July 13, 2007; 35(suppl_2): W619 - W624. [Abstract] [Full Text] [PDF]
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R. K. Reen, A. A. Dombkowski, L. A. Kresty, D. Cukovic, J. M. Mele, S. Salagrama, R. Nines, and G. D. Stoner Effects of Phenylethyl Isothiocyanate on Early Molecular Events in N-Nitrosomethylbenzylamine-Induced Cytotoxicity in Rat Esophagus Cancer Res., July 1, 2007; 67(13): 6484 - 6492. [Abstract] [Full Text] [PDF]
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 L. Yin and B. A. Dale Activation of protective responses in oral epithelial cells by Fusobacterium nucleatum and human {beta}-defensin-2 J. Med. Microbiol., July 1, 2007; 56(7): 976 - 987. [Abstract] [Full Text] [PDF]
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C. J. Mungall, D. B. Emmert, and The FlyBase Consortium A Chado case study: an ontology-based modular schema for representing genome-associated biological information Bioinformatics, July 1, 2007; 23(13): i337 - i346. [Abstract] [Full Text] [PDF]
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 A. S. Gesteira, F. Micheli, N. Carels, A. C. Da Silva, K. P. Gramacho, I. Schuster, J. N. Macedo, G. A. G. Pereira, and J. C. M. Cascardo Comparative Analysis of Expressed Genes from Cacao Meristems Infected by Moniliophthora perniciosa Ann. Bot., July 1, 2007; 100(1): 129 - 140. [Abstract] [Full Text] [PDF]
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