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Nucleic Acids Research, 2004, Vol. 32, Database issue D293-D295
© 2004 Oxford University Press

The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli

Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani1, Paul Stothard, Michael Ellison1 and David S. Wishart*

Faculty of Pharmacy and Pharmaceutical Sciences and 1 Department of Biochemistry, University of Alberta, Edmonton, Alberta T6G 2N8, Canada

*To whom correspondence should be addressed. Tel: +1 780 492 0383; Fax: +1 780 492 1071; Email: david.wishart{at}ualberta.ca

The CyberCell Database (CCDB: http://redpoll. pharmacy.ualberta.ca/CCDB) is a comprehensive, web-accessible database designed to support and coordinate international efforts in modeling an Escherichia coli cell on a computer. The CCDB brings together both observed and derived quantitative data from numerous independent sources covering many aspects of the genomic, proteomic and metabolomic character of E.coli (strain K12). The database is self-updating but also supports ‘community’ annotation, and provides an extensive array of viewing, querying and search options including a powerful, easy-to-use relational data extraction system.


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