Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (183K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Hertz-Fowler, C.
Right arrow Articles by Barrell, B.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Hertz-Fowler, C.
Right arrow Articles by Barrell, B.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2004, Vol. 32, Database issue D339-D343
© 2004 Oxford University Press

GeneDB: a resource for prokaryotic and eukaryotic organisms

Christiane Hertz-Fowler*, Chris S. Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou, Paul Mooney, Adrian Tivey, Matthew Berriman, Neil Hall, Kim Rutherford, Julian Parkhill, Alasdair C. Ivens, Marie-Adele Rajandream and Bart Barrell

The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK

*To whom correspondence should be addressed. Tel: +44 1223 494955; Fax: +44 1223 494919; Email: chf{at}sanger.ac.uk
The authors wish it to be known that, in their opinion, the first three authors should be regarded as joint First Authors

GeneDB (http://www.genedb.org/) is a genome database for prokaryotic and eukaryotic organisms. The resource provides a portal through which data generated by the Pathogen Sequencing Unit at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be made publicly available. It combines data from finished and ongoing genome and expressed sequence tag (EST) projects with curated annotation, that can be searched, sorted and downloaded, using a single web based resource. The current release stores 11 datasets of which six are curated and maintained by biologists, who review and incorporate information from the scientific literature, public databases and the respective research communities.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
Y. Yamazaki, R. Akashi, Y. Banno, T. Endo, H. Ezura, K. Fukami-Kobayashi, K. Inaba, T. Isa, K. Kamei, F. Kasai, et al.
NBRP databases: databases of biological resources in Japan
Nucleic Acids Res., November 24, 2009; (2009) gkp996v1.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
Y. Espanol, D. Thut, A. Schneider, and L. R. de Pouplana
A mechanism for functional segregation of mitochondrial and cytosolic genetic codes
PNAS, November 17, 2009; 106(46): 19420 - 19425.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
G. F. Berriz, J. E. Beaver, C. Cenik, M. Tasan, and F. P. Roth
Next generation software for functional trend analysis
Bioinformatics, November 15, 2009; 25(22): 3043 - 3044.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
P. J. Kersey, D. Lawson, E. Birney, P. S. Derwent, M. Haimel, J. Herrero, S. Keenan, A. Kerhornou, G. Koscielny, A. Kahari, et al.
Ensembl genomes: Extending ensembl across the taxonomic space
Nucleic Acids Res., November 1, 2009; (2009) gkp871v1.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. Aslett, C. Aurrecoechea, M. Berriman, J. Brestelli, B. P. Brunk, M. Carrington, D. P. Depledge, S. Fischer, B. Gajria, X. Gao, et al.
TriTrypDB: a functional genomic resource for the Trypanosomatidae
Nucleic Acids Res., October 20, 2009; (2009) gkp851v1.
[Abstract] [Full Text] [PDF]

Home page
 RNAHome page
R. J. Taft, E. A. Glazov, T. Lassmann, Y. Hayashizaki, P. Carninci, and J. S. Mattick
Small RNAs derived from snoRNAs
RNA, July 1, 2009; 15(7): 1233 - 1240.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
I. R. E. Nett, D. M. A. Martin, D. Miranda-Saavedra, D. Lamont, J. D. Barber, A. Mehlert, and M. A. J. Ferguson
The Phosphoproteome of Bloodstream Form Trypanosoma brucei, Causative Agent of African Sleeping Sickness
Mol. Cell. Proteomics, July 1, 2009; 8(7): 1527 - 1538.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
E. Kristiansson, M. Thorsen, M. J. Tamas, and O. Nerman
Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory Elements
Mol. Biol. Evol., June 1, 2009; 26(6): 1299 - 1307.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. Biol.Home page
J. R. Zamudio, B. Mittra, A. Chattopadhyay, J. A. Wohlschlegel, N. R. Sturm, and D. A. Campbell
Trypanosoma brucei Spliced Leader RNA Maturation by the Cap 1 2'-O-Ribose Methyltransferase and SLA1 H/ACA snoRNA Pseudouridine Synthase Complex
Mol. Cell. Biol., March 1, 2009; 29(5): 1202 - 1211.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
M. Pusnik, F. Charriere, P. Maser, R. F. Waller, M. J. Dagley, T. Lithgow, and A. Schneider
The Single Mitochondrial Porin of Trypanosoma brucei is the Main Metabolite Transporter in the Outer Mitochondrial Membrane
Mol. Biol. Evol., March 1, 2009; 26(3): 671 - 680.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
A. X. C. N. Valente, S. B. Roberts, G. A. Buck, and Y. Gao
Functional organization of the yeast proteome by a yeast interactome map
PNAS, February 3, 2009; 106(5): 1490 - 1495.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
U. Pieper, N. Eswar, B. M. Webb, D. Eramian, L. Kelly, D. T. Barkan, H. Carter, P. Mankoo, R. Karchin, M. A. Marti-Renom, et al.
MODBASE, a database of annotated comparative protein structure models and associated resources
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D347 - D354.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. A. Ackermann, S. J. Carmona, and F. Aguero
TcSNP: a database of genetic variation in Trypanosoma cruzi
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D544 - D549.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
C.-H. Kuo, J. P. Wares, and J. C. Kissinger
The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees
Mol. Biol. Evol., December 1, 2008; 25(12): 2689 - 2698.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
M. Pirooznia, T. Habib, E. J. Perkins, and Y. Deng
GOfetcher: a database with complex searching facility for gene ontology
Bioinformatics, November 1, 2008; 24(21): 2561 - 2563.
[Abstract] [Full Text] [PDF]

Home page
 Infect. Immun.Home page
Y. Goto, D. Carter, and S. G. Reed
Immunological Dominance of Trypanosoma cruzi Tandem Repeat Proteins
Infect. Immun., September 1, 2008; 76(9): 3967 - 3974.
[Abstract] [Full Text] [PDF]

Home page
 J. Exp. Biol.Home page
V. C. Santos, R. N. Araujo, L. A. D. Machado, M. H. Pereira, and N. F. Gontijo
The physiology of the midgut of Lutzomyia longipalpis (Lutz and Neiva 1912): pH in different physiological conditions and mechanisms involved in its control
J. Exp. Biol., September 1, 2008; 211(17): 2792 - 2798.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Nakagawa, Y. Niimura, T. Gojobori, H. Tanaka, and K.-i. Miura
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes
Nucleic Acids Res., February 11, 2008; 36(3): 861 - 871.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
N. P. Gauthier, M. E. Larsen, R. Wernersson, U. de Lichtenberg, L. J. Jensen, S. Brunak, and T. S. Jensen
Cyclebase.org a comprehensive multi-organism online database of cell-cycle experiments
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D854 - D859.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. Ruan, H. Li, Z. Chen, A. Coghlan, L. J. M. Coin, Y. Guo, J.-K. Heriche, Y. Hu, K. Kristiansen, R. Li, et al.
TreeFam: 2008 Update
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D735 - D740.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
N. Milman, S. A. Motyka, P. T. Englund, D. Robinson, and J. Shlomai
Mitochondrial origin-binding protein UMSBP mediates DNA replication and segregation in trypanosomes
PNAS, December 4, 2007; 104(49): 19250 - 19255.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. Biol.Home page
M. Pusnik, I. Small, L. K. Read, T. Fabbro, and A. Schneider
Pentatricopeptide Repeat Proteins in Trypanosoma brucei Function in Mitochondrial Ribosomes
Mol. Cell. Biol., October 1, 2007; 27(19): 6876 - 6888.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. T. Jonstrup, K. R. Andersen, L. B. Van, and D. E. Brodersen
The 1.4-A crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme
Nucleic Acids Res., May 14, 2007; 35(9): 3153 - 3164.
[Abstract] [Full Text] [PDF]

Home page
 Infect. Immun.Home page
Y. Goto, R. N. Coler, and S. G. Reed
Bioinformatic Identification of Tandem Repeat Antigens of the Leishmania donovani Complex
Infect. Immun., February 1, 2007; 75(2): 846 - 851.
[Abstract] [Full Text] [PDF]

Home page
 J. Cell Sci.Home page
D. M. Baron, K. S. Ralston, Z. P. Kabututu, and K. L. Hill
Functional genomics in Trypanosoma brucei identifies evolutionarily conserved components of motile flagella
J. Cell Sci., February 1, 2007; 120(3): 478 - 491.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
E. A. O'Brien, L. B. Koski, Y. Zhang, L. Yang, E. Wang, M. W. Gray, G. Burger, and B. F. Lang
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs)
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D445 - D451.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Aurrecoechea, M. Heiges, H. Wang, Z. Wang, S. Fischer, P. Rhodes, J. Miller, E. Kraemer, C. J. Stoeckert Jr., D. S. Roos, et al.
ApiDB: integrated resources for the apicomplexan bioinformatics resource center
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D427 - D430.
[Abstract] [Full Text] [PDF]

Home page
 GENES CELLSHome page
H. Mitsuzawa
Ammonium transporter genes in the fission yeast Schizosaccharomyces pombe: role in ammonium uptake and a morphological transition.
Genes Cells, October 1, 2006; 11(10): 1183 - 1195.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. J. Penkett, J. A. Morris, V. Wood, and J. Bahler
YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W330 - W334.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
F. Aguero, W. Zheng, D. B. Weatherly, P. Mendes, and J. C. Kissinger
TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D428 - D431.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
H. Li, A. Coghlan, J. Ruan, L. J. Coin, J.-K. Heriche, L. Osmotherly, R. Li, T. Liu, Z. Zhang, L. Bolund, et al.
TreeFam: a curated database of phylogenetic trees of animal gene families
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D572 - D580.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
T. Meinel, A. Krause, H. Luz, M. Vingron, and E. Staub
The SYSTERS Protein Family Database in 2005
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D226 - D229.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
L. Hermida, S. Brachat, S. Voegeli, P. Philippsen, and M. Primig
The Ashbya Genome Database (AGD)--a tool for the yeast community and genome biologists
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D348 - D352.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. d'Enfert, S. Goyard, S. Rodriguez-Arnaveilhe, L. Frangeul, L. Jones, F. Tekaia, O. Bader, A. Albrecht, L. Castillo, A. Dominguez, et al.
CandidaDB: a genome database for Candida albicans pathogenomics
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D353 - D357.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.