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Nucleic Acids Research, 2004, Vol. 32, Database issue D398-D400
© 2004 Oxford University Press

SGMD: the Soybean Genomics and Microarray Database

Nadim W. Alkharouf1,2 and Benjamin F. Matthews*,1

1 Soybean Genomics and Improvement Laboratory, USDA-ARS, Building 006, Room 118, 10300 Baltimore Avenue, Beltsville, MD 20705-2350, USA and 2 School of Computational Sciences, George Mason University, 10900 University Boulevard, MSN 5B3, Manassas, VA 20110, USA

*To whom correspondence should be addressed. Tel: +1 301 504 5730; Fax: +1 301 504 5728; Email: matthewb{at}ba.ars.usda.gov

The Soybean Genomics and Microarray Database (SGMD) attempts to provide an integrated view of the interaction of soybean with the soybean cyst nematode and contains genomic, EST and microarray data with embedded analytical tools allowing correlation of soybean ESTs with their gene expression profiles. SGMD provides analytical tools to mine the microarray data quickly by integrating many analysis methods within the database itself. The expression profiles of genes at time intervals during the first 8 days of nematode invasion is searchable by gene name or GenBank accession number. Recent developments include the addition of a searchable database for soybean cyst nematode ESTs and photographs of the invasion process at time points examined using microarrays. SGMD is completely accessible from the web at: http://psi081.ba.ars.usda.gov/SGMD/default.htm.


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