Skip Navigation

Nucleic Acids Research 2004 32(Web Server Issue):W372-W374; doi:10.1093/nar/gkh374
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (136K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Guda, C.
Right arrow Articles by Subramaniam, S.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Guda, C.
Right arrow Articles by Subramaniam, S.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© 2004, the authors
Nucleic Acids Research, Vol. 32, Web Server issue © Oxford University Press 2004; all rights reserved

MITOPRED: a web server for the prediction of mitochondrial proteins

Chittibabu Guda1, Purnima Guda1, Eoin Fahy1 and Shankar Subramaniam1,2,*

1 San Diego Supercomputer Center and 2 Departments of Bioengineering, Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA

* To whom correspondence should be addressed. Tel: +1 858 822 0986; Fax: +1 858 822 3782; Email: shankar{at}ucsd.edu

Received February 13, 2004; Revised and Accepted March 15, 2004

MITOPRED web server enables prediction of nucleus-encoded mitochondrial proteins in all eukaryotic species. Predictions are made using a new algorithm based primarily on Pfam domain occurrence patterns in mitochondrial and non-mitochondrial locations. Pre-calculated predictions are instantly accessible for proteomes of Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila, Homo sapiens, Mus musculus and Arabidopsis species as well as all the eukaryotic sequences in the Swiss-Prot and TrEMBL databases. Queries, at different confidence levels, can be made through four distinct options: (i) entering Swiss-Prot/TrEMBL accession numbers; (ii) uploading a local file with such accession numbers; (iii) entering protein sequences; (iv) uploading a local file containing protein sequences in FASTA format. Automated updates are scheduled for the pre-calculated prediction database so as to provide access to the most current data. The server, its documentation and the data are available from http://mitopred.sdsc.edu.

The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 J. Biol. Chem.Home page
K. W. A. van Grinsven, S. Rosnowsky, S. W. H. van Weelden, S. Putz, M. van der Giezen, W. Martin, J. J. van Hellemond, A. G. M. Tielens, and K. Henze
Acetate:Succinate CoA-transferase in the Hydrogenosomes of Trichomonas vaginalis: IDENTIFICATION AND CHARACTERIZATION
J. Biol. Chem., January 18, 2008; 283(3): 1411 - 1418.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Guda
pTARGET: a web server for predicting protein subcellular localization.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W210 - W213.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
F. Forner, L. J. Foster, S. Campanaro, G. Valle, and M. Mann
Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver
Mol. Cell. Proteomics, April 1, 2006; 5(4): 608 - 619.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Biol. CellHome page
R. P. Zahedi, A. Sickmann, A. M. Boehm, C. Winkler, N. Zufall, B. Schonfisch, B. Guiard, N. Pfanner, and C. Meisinger
Proteomic Analysis of the Yeast Mitochondrial Outer Membrane Reveals Accumulation of a Subclass of Preproteins
Mol. Biol. Cell, March 1, 2006; 17(3): 1436 - 1450.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
J. L. Heazlewood, J. Tonti-Filippini, R. E. Verboom, and A. H. Millar
Combining Experimental and Predicted Datasets for Determination of the Subcellular Location of Proteins in Arabidopsis
Plant Physiology, October 1, 2005; 139(2): 598 - 609.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
Q. Xie, T. Lin, Y. Zhang, J. Zheng, and J. A. Bonanno
Molecular Cloning and Characterization of a Human AIF-like Gene with Ability to Induce Apoptosis
J. Biol. Chem., May 20, 2005; 280(20): 19673 - 19681.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. L. Heazlewood and A. H. Millar
AMPDB: the Arabidopsis Mitochondrial Protein Database
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D605 - D610.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.