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Nucleic Acids Research 2005 33(16):5120-5132; doi:10.1093/nar/gki828
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Published online 9 September 2005

© The Author 2005. Published by Oxford University Press. All rights reserved
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Article

RNase P: role of distinct protein cofactors in tRNA substrate recognition and RNA-based catalysis

Ela Sharin, Aleks Schein, Hagit Mann, Yitzhak Ben-Asouli and Nayef Jarrous*

Department of Molecular Biology, The Hebrew University-Hadassah Medical School Jerusalem 91120, Israel

*To whom correspondence should be addressed. Tel: +972 2 6758233; Fax: +972 2 6784010; Email: jarrous{at}md.huji.ac.il

Received January 24, 2005. Revised May 22, 2005. Accepted August 24, 2005.

The Escherichia coli ribonuclease P (RNase P) has a protein component, termed C5, which acts as a cofactor for the catalytic M1 RNA subunit that processes the 5' leader sequence of precursor tRNA. Rpp29, a conserved protein subunit of human RNase P, can substitute for C5 protein in reconstitution assays of M1 RNA activity. To better understand the role of the former protein, we compare the mode of action of Rpp29 to that of the C5 protein in activation of M1 RNA. Enzyme kinetic analyses reveal that complexes of M1 RNA–Rpp29 and M1 RNA–C5 exhibit comparable binding affinities to precursor tRNA but different catalytic efficiencies. High concentrations of substrate impede the activity of the former complex. Rpp29 itself exhibits high affinity in substrate binding, which seems to reduce the catalytic efficiency of the reconstituted ribonucleoprotein. Rpp29 has a conserved C-terminal domain with an Sm-like fold that mediates interaction with M1 RNA and precursor tRNA and can activate M1 RNA. The results suggest that distinct protein folds in two unrelated protein cofactors can facilitate transition from RNA- to ribonucleoprotein-based catalysis by RNase P.


The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors


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