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Nucleic Acids Research 2005 33(2):577-586; doi:10.1093/nar/gki206
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Published online 26 January 2005

© The Author 2005. Published by Oxford University Press. All rights reserved
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Article

The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice

Byoung-Moo Lee*, Young-Jin Park, Dong-Suk Park, Hee-Wan Kang1, Jeong-Gu Kim, Eun-Sung Song, In-Cheol Park, Ung-Han Yoon, Jang-Ho Hahn, Bon-Sung Koo, Gil-Bok Lee, Hyungtae Kim2, Hyun-Seok Park2, Kyong-Oh Yoon2, Jeong-Hyun Kim2, Chol-hee Jung2, Nae-Hyung Koh2, Jeong-Sun Seo2,3 and Seung-Joo Go

National Institute of Agricultural Biotechnology, Rural Development Administration Suwon 441-707, Korea 1 Graduate School of Bio and Information Technology, Hankyong National University Ansung 456-749, Korea 2 Macrogen Inc., World Meridian Venture Center 10F #60-24, Gasan-dong, Geumcheon-gu, Seoul 153-023, Korea 3 College of Medicine, Seoul National University Chongno-gu 151-742, Korea

*To whom correspondence should be addressed. Tel: +82 31 299 1751; Fax: +82 31 299 1798; Email: lbmoo{at}rda.go.kr

Received September 30, 2004. Revised December 8, 2004. Accepted January 5, 2005.

The nucleotide sequence was determined for the genome of Xanthomonas oryzae pathovar oryzae (Xoo) KACC10331, a bacterium that causes bacterial blight in rice (Oryza sativa L.). The genome is comprised of a single, 4 941 439 bp, circular chromosome that is G + C rich (63.7%). The genome includes 4637 open reading frames (ORFs) of which 3340 (72.0%) could be assigned putative function. Orthologs for 80% of the predicted Xoo genes were found in the previously reported X.axonopodis pv. citri (Xac) and X.campestris pv. campestris (Xcc) genomes, but 245 genes apparently specific to Xoo were identified. Xoo genes likely to be associated with pathogenesis include eight with similarity to Xanthomonas avirulence (avr) genes, a set of hypersensitive reaction and pathogenicity (hrp) genes, genes for exopolysaccharide production, and genes encoding extracellular plant cell wall-degrading enzymes. The presence of these genes provides insights into the interactions of this pathogen with its gramineous host.

The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors

DDBJ/EMBL/GenBank accession no. AE013598


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