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Nucleic Acids Research 2005 33(Database Issue):D242-D246; doi:10.1093/nar/gki013
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Nucleic Acids Research, 2005, Vol. 33, Database issue D242-D246
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved

Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB

Thomas Lütteke, Martin Frank1 and Claus-W. von der Lieth*

Central Spectroscopic Department, German Cancer Research Centre, INF 280, D-69120 Heidelberg, Germany and 1 Institute for Glycomics, Griffith University (Gold Coast Campus), Queensland 9726, Australia

* To whom correspondence should be addressed. Tel: +49 6221 424541; Fax: +49 6221 424554; Email: w.vonderlieth{at}dkfz.de

Received August 13, 2004; Revised and Accepted September 16, 2004

Knowledge of the 3D structure of glycoproteins and protein–carbohydrate complexes is indispensable to fully understand the biological processes they are involved in. Carbohydrate Structure Suite is an attempt to automatically analyse carbohydrate structures contained in the PDB and make the results publicly available on the internet. Characteristic torsion angles, glycoprotein sequences and carbohydrate–protein interactions are analysed. Furthermore, tools to crosslink the PDB and carbohydrate databases and to check the integrity of carbohydrate 3D structures are included. The service is available at (www.dkfz.de/spec/css/).

The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions{at}oupjournals.org.


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