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Nucleic Acids Research 2005 33(Database Issue):D297-D302; doi:10.1093/nar/gki039
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Nucleic Acids Research, 2005, Vol. 33, Database issue D297-D302
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

Paul Kersey*, Lawrence Bower, Lorna Morris, Alan Horne, Robert Petryszak, Carola Kanz, Alexander Kanapin, Ujjwal Das, Karine Michoud1, Isabelle Phan1, Alexandre Gattiker1, Tamara Kulikova, Nadeem Faruque, Karyn Duggan, Peter Mclaren, Britt Reimholz2, Laurent Duret3, Simon Penel3, Ingmar Reuter4 and Rolf Apweiler

The EMBL Outstation–European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 1 Swiss Institute of Bioinformatics, CMU, 1 rue Michel Servet, 1211 Geneva 4, Switzerland, 2 RZPD Deutsches Ressourcenzentrum fr Genomforschung GmbH, Heubnerweg 6, 14059 Berlin, Germany, 3 Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558 Université Lyon 1, France and 4 BIOBASE GmbH, Halchtersche Strasse 33, D-38304 Wolfenbuttel, Germany

* To whom correspondence should be addressed. Tel: +44 1223 494601; Fax: +44 1223 494468; Email: pkersey{at}ebi.ac.uk

Received September 13, 2004; Revised September 17, 2004; Accepted September 27, 2004

Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of the organism. The preparation of this analysis is supported through Genome Reviews, a new database of bacterial and archaeal DNA sequences in which annotation has been upgraded (compared to the original submission) through the integration of data from many sources, including the EMBL Nucleotide Sequence Database, the UniProt Knowledgebase, InterPro, CluSTr, GOA and HOGENOM. Integr8 also allows the users to customize their own interactive analysis, and to download both customized and prepared datasets for their own use. Integr8 is available at http://www.ebi.ac.uk/integr8.

The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions{at}oupjournals.org.


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