Nucleic Acids Research, 2005, Vol. 33, Database issue D308-D310
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved
The PEDANT genome database in 2005
1 Institute for Bioinformatics, GSF—National Research Center for Health and Environment, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany, 2 Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München, 85350 Freising, Germany and 3 Biomax Informatics AG, Lochhamer Straße 11, 82152 Martinsried, Germany
* To whom correspondence should be addressed. Tel: +49 8161 712134; Fax: +49 8161 712186; Email: d.frishman{at}wzw.tum.de
Received September 11, 2004; Revised and Accepted September 17, 2004
The PEDANT genome database (http://pedant.gsf.de) contains pre-computed bioinformatics analyses of publicly available genomes. Its main mission is to provide robust automatic annotation of the vast majority of amino acid sequences, which have not been subjected to in-depth manual curation by human experts in high-quality protein sequence databases. By design PEDANT annotation is genome-oriented, making it possible to explore genomic context of gene products, and evaluate functional and structural content of genomes using a category-based query mechanism. At present, the PEDANT database contains exhaustive annotation of over 1 240 000 proteins from 270 eubacterial, 23 archeal and 41 eukaryotic genomes.
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