Nucleic Acids Research, 2005, Vol. 33, Database issue D39-D45
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved
Database resources of the National Center for Biotechnology Information
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA
* To whom correspondence should be addressed. Tel: +1 301 435 5950; Fax: +1 301 480 9241; Email: wheeler{at}ncbi.nlm.nih.gov
Received September 15, 2004; Revised and Accepted October 5, 2004
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data retrieval systems and computational resources for the analysis of data in GenBank and other biological data made available through NCBI's website. NCBI resources include Entrez, Entrez Programming Utilities, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups (COGs), Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, SAGEmap, Gene Expression Omnibus (GEO), Online Mendelian Inheritance in Man (OMIM), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD) and the Conserved Domain Architecture Retrieval Tool (CDART). Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized datasets. All of the resources can be accessed through the NCBI home page at http://www.ncbi.nlm.nih.gov.
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|
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|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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G. A. Thorisson, A. V. Smith, L. Krishnan, and L. D. Stein The International HapMap Project Web site Genome Res., November 1, 2005; 15(11): 1592 - 1593. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Watanabe, J. O. Blaisdell, S. S. Wallace, and J. P. Bond Engineering Functional Changes in Escherichia coli Endonuclease III Based on Phylogenetic and Structural Analyses J. Biol. Chem., October 7, 2005; 280(40): 34378 - 34384. [Abstract] [Full Text] [PDF]
|
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|
B. Giardine, C. Riemer, R. C. Hardison, R. Burhans, L. Elnitski, P. Shah, Y. Zhang, D. Blankenberg, I. Albert, J. Taylor, et al. Galaxy: A platform for interactive large-scale genome analysis Genome Res., October 1, 2005; 15(10): 1451 - 1455. [Abstract] [Full Text] [PDF]
|
|
|
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D. Mokranjac, M. Sichting, D. Popov-Celeketic, A. Berg, K. Hell, and W. Neupert The Import Motor of the Yeast Mitochondrial TIM23 Preprotein Translocase Contains Two Different J Proteins, Tim14 and Mdj2 J. Biol. Chem., September 9, 2005; 280(36): 31608 - 31614. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Drancourt and D. Raoult Sequence-Based Identification of New Bacteria: a Proposition for Creation of an Orphan Bacterium Repository J. Clin. Microbiol., September 1, 2005; 43(9): 4311 - 4315. [Full Text] [PDF]
|
|
|
|
 |
|
 H. F Willard, M. Angrist, and G. S Ginsburg Genomic medicine: genetic variation and its impact on the future of health care Phil Trans R Soc B, August 29, 2005; 360(1460): 1543 - 1550. [Abstract] [Full Text] [PDF]
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 |
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 F. A. Kondrashov Prediction of pathogenic mutations in mitochondrially encoded human tRNAs Hum. Mol. Genet., August 15, 2005; 14(16): 2415 - 2419. [Abstract] [Full Text] [PDF]
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M. Smith, V. Kunin, L. Goldovsky, A. J. Enright, and C. A. Ouzounis MagicMatch--cross-referencing sequence identifiers across databases Bioinformatics, August 15, 2005; 21(16): 3429 - 3430. [Abstract] [Full Text] [PDF]
|
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P. Piccinelli, M. A. Rosenblad, and T. Samuelsson Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes Nucleic Acids Res., August 8, 2005; 33(14): 4485 - 4495. [Abstract] [Full Text] [PDF]
|
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|
 |
|
 D. Field, E. J. Feil, and G. A. Wilson Databases and software for the comparison of prokaryotic genomes Microbiology, July 1, 2005; 151(7): 2125 - 2132. [Abstract] [Full Text] [PDF]
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G. G. Loots and I. Ovcharenko Dcode.org anthology of comparative genomic tools Nucleic Acids Res., July 1, 2005; 33(suppl_2): W56 - W64. [Abstract] [Full Text] [PDF]
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D. L. Corcoran, E. Feingold, and P. V. Benos FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting Nucleic Acids Res., July 1, 2005; 33(suppl_2): W442 - W446. [Abstract] [Full Text] [PDF]
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H. Maier, S. Dohr, K. Grote, S. O'Keeffe, T. Werner, M. H. de Angelis, and R. Schneider LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts Nucleic Acids Res., July 1, 2005; 33(suppl_2): W779 - W782. [Abstract] [Full Text] [PDF]
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|
 D. L. Wheeler, B. Smith-White, V. Chetvernin, S. Resenchuk, S. M. Dombrowski, S. W. Pechous, T. Tatusova, and J. Ostell Plant Genome Resources at the National Center for Biotechnology Information Plant Physiology, July 1, 2005; 138(3): 1280 - 1288. [Abstract] [Full Text] [PDF]
|
|
|
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 |
|
 E. Neumann A Life Science Semantic Web: Are We There Yet? Sci. Signal., May 10, 2005; 2005(283): pe22 - pe22. [Abstract] [Full Text] [PDF]
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 W. C. Lathe, M. E. Mangan, D. Karolchik, W. J. Kent, and D. Haussler Integrating Genomic Information through the UCSC Genome Browser Am. Assoc. Cancer Res. Educ. Book, April 1, 2005; 2005(1): 3 - 6. [Full Text] [PDF]
|
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|
|
D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and D. L. Wheeler GenBank Nucleic Acids Res., January 1, 2005; 33(suppl_1): D34 - D38. [Abstract] [Full Text] [PDF]
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