Nucleic Acids Research, 2005, Vol. 33, Database issue D501-D504
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 6An.12J, 45 Center Drive, Bethesda, MD 20892-6510, USA
* To whom correspondence should be addressed. Tel: +1 301 435 5950; Fax: +1 301 480 2918; Email: pruitt{at}ncbi.nlm.nih.gov
Received September 15, 2004; Revised and Accepted September 21, 2004
The National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database (http://www.ncbi.nlm.nih.gov/RefSeq/) provides a non-redundant collection of sequences representing genomic data, transcripts and proteins. Although the goal is to provide a comprehensive dataset representing the complete sequence information for any given species, the database pragmatically includes sequence data that are currently publicly available in the archival databases. The database incorporates data from over 2400 organisms and includes over one million proteins representing significant taxonomic diversity spanning prokaryotes, eukaryotes and viruses. Nucleotide and protein sequences are explicitly linked, and the sequences are linked to other resources including the NCBI Map Viewer and Gene. Sequences are annotated to include coding regions, conserved domains, variation, references, names, database cross-references, and other features using a combined approach of collaboration and other input from the scientific community, automated annotation, propagation from GenBank and curation by NCBI staff.
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions{at}oupjournals.org.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  X. Wang, X. Wang, R. K. Varma, L. Beauchamp, S. Magdaleno, and T. J. Sendera Selection of hyperfunctional siRNAs with improved potency and specificity Nucleic Acids Res., October 21, 2009; (2009) gkp864v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Tang, R. P. LeGros, N. Louneva, L. Yeh, J. W. Cohen, C.-G. Hahn, D. J. Blake, S. E. Arnold, and K. Talbot Dysbindin-1 in dorsolateral prefrontal cortex of schizophrenia cases is reduced in an isoform-specific manner unrelated to dysbindin-1 mRNA expression Hum. Mol. Genet., October 15, 2009; 18(20): 3851 - 3863. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Alvarez, S. Elbashir, T. Borland, I. Toudjarska, P. Hadwiger, M. John, I. Roehl, S. S. Morskaya, R. Martinello, J. Kahn, et al. RNA Interference-Mediated Silencing of the Respiratory Syncytial Virus Nucleocapsid Defines a Potent Antiviral Strategy Antimicrob. Agents Chemother., September 1, 2009; 53(9): 3952 - 3962. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Hausser, P. Berninger, C. Rodak, Y. Jantscher, S. Wirth, and M. Zavolan MirZ: an integrated microRNA expression atlas and target prediction resource Nucleic Acids Res., July 1, 2009; 37(suppl_2): W266 - W272. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. C. Pang, M. E. Dinger, T. R. Mercer, L. Malquori, S. M. Grimmond, W. Chen, and J. S. Mattick Genome-Wide Identification of Long Noncoding RNAs in CD8+ T Cells J. Immunol., June 15, 2009; 182(12): 7738 - 7748. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Garber, M. Guttman, M. Clamp, M. C. Zody, N. Friedman, and X. Xie Identifying novel constrained elements by exploiting biased substitution patterns Bioinformatics, June 15, 2009; 25(12): i54 - i62. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J H M Schuurs-Hoeijmakers, S Vermeer, B W M van Bon, R Pfundt, C Marcelis, A P M de Brouwer, N de Leeuw, and B. B A de Vries Refining the critical region of the novel 19q13.11 microdeletion syndrome to 750 Kb J. Med. Genet., June 1, 2009; 46(6): 421 - 423. [Full Text] [PDF]
|
|
|
|
|
|
P. Bjorkholm, P. Daniluk, A. Kryshtafovych, K. Fidelis, R. Andersson, and T. R. Hvidsten Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts Bioinformatics, May 15, 2009; 25(10): 1264 - 1270. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. Wang and T. S. Furey Analysis of Complex Disease Association and Linkage Studies Using the University of California Santa Cruz Genome Browser Circ Cardiovasc Genet, April 1, 2009; 2(2): 199 - 204. [Full Text] [PDF]
|
|
|
|
|
|
K.-H. Yen, C.-L. Ho, and C. Lee The analysis of inconsistencies between cytogenetic annotations and sequence mapping by defining the imprecision zones of cytogenetic banding Bioinformatics, April 1, 2009; 25(7): 845 - 852. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. T. Garnett, T. M. Han, M. J. Gilchrist, J. C. Smith, M. B. Eisen, F. C. Wardle, and S. L. Amacher Identification of direct T-box target genes in the developing zebrafish mesoderm Development, March 1, 2009; 136(5): 749 - 760. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Matsumura, Z. Huang, T. Baba, P. S. Lee, J. C. Barnett, S. Mori, J. T. Chang, W.-L. Kuo, A. H. Gusberg, R. S. Whitaker, et al. Yin Yang 1 Modulates Taxane Response in Epithelial Ovarian Cancer Mol. Cancer Res., February 1, 2009; 7(2): 210 - 220. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 W. C. Lima, A. M. Varani, and C. F.M. Menck NAD Biosynthesis Evolution in Bacteria: Lateral Gene Transfer of Kynurenine Pathway in Xanthomonadales and Flavobacteriales Mol. Biol. Evol., February 1, 2009; 26(2): 399 - 406. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. C. Friedman, K. K.-H. Farh, C. B. Burge, and D. P. Bartel Most mammalian mRNAs are conserved targets of microRNAs Genome Res., January 1, 2009; 19(1): 92 - 105. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Taccioli, E. Fabbri, R. Visone, S. Volinia, G. A. Calin, L. Y. Fong, R. Gambari, A. Bottoni, M. Acunzo, J. Hagan, et al. UCbase & miRfunc: a database of ultraconserved sequences and microRNA function Nucleic Acids Res., January 1, 2009; 37(suppl_1): D41 - D48. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Lee and G. Shin CleanEST: a database of cleansed EST libraries Nucleic Acids Res., January 1, 2009; 37(suppl_1): D686 - D689. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Keerthikumar, R. Raju, K. Kandasamy, A. Hijikata, S. Ramabadran, L. Balakrishnan, M. Ahmed, S. Rani, L. D. N. Selvan, D. S. Somanathan, et al. RAPID: Resource of Asian Primary Immunodeficiency Diseases Nucleic Acids Res., January 1, 2009; 37(suppl_1): D863 - D867. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Belshaw, T. de Oliveira, S. Markowitz, and A. Rambaut The RNA Virus Database Nucleic Acids Res., January 1, 2009; 37(suppl_1): D431 - D435. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. E. Babiarz, J. G. Ruby, Y. Wang, D. P. Bartel, and R. Blelloch Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs Genes & Dev., October 15, 2008; 22(20): 2773 - 2785. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Xu, C.-L. Wei, F. Lin, and W.-K. Sung An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data Bioinformatics, October 15, 2008; 24(20): 2344 - 2349. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. E. Janes, T. Ezaz, J. A. M. Graves, and S. V. Edwards Characterization, chromosomal location, and genomic neighborhood of a ratite ortholog of a gene with gonadal expression in mammals Integr. Comp. Biol., October 1, 2008; 48(4): 505 - 511. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Bekaert and E. C. Teeling UniPrime: a workflow-based platform for improved universal primer design Nucleic Acids Res., June 1, 2008; 36(10): e56 - e56. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Z. Weinberg, E. E. Regulski, M. C. Hammond, J. E. Barrick, Z. Yao, W. L. Ruzzo, and R. R. Breaker The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches RNA, May 1, 2008; 14(5): 822 - 828. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Li, X. Dai, and X. Zhao A nearest neighbor approach for automated transporter prediction and categorization from protein sequences Bioinformatics, May 1, 2008; 24(9): 1129 - 1136. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. Garrett-Mayer, G. Parmigiani, X. Zhong, L. Cope, and E. Gabrielson Cross-study validation and combined analysis of gene expression microarray data Biostat., April 1, 2008; 9(2): 333 - 354. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. Deusch, G. Landan, M. Roettger, N. Gruenheit, K. V. Kowallik, J. F. Allen, W. Martin, and T. Dagan Genes of Cyanobacterial Origin in Plant Nuclear Genomes Point to a Heterocyst-Forming Plastid Ancestor Mol. Biol. Evol., April 1, 2008; 25(4): 748 - 761. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Moreno-Hagelsieb and K. Latimer Choosing BLAST options for better detection of orthologs as reciprocal best hits Bioinformatics, February 1, 2008; 24(3): 319 - 324. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Bourdeau, J. Deschenes, D. Laperriere, M. Aid, J. H. White, and S. Mader Mechanisms of primary and secondary estrogen target gene regulation in breast cancer cells Nucleic Acids Res., January 17, 2008; 36(1): 76 - 93. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Yan, B. M. Barnes, F. Kohl, and T. G. Marr Modulation of gene expression in hibernating arctic ground squirrels Physiol Genomics, January 17, 2008; 32(2): 170 - 181. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. R. Mercer, M. E. Dinger, S. M. Sunkin, M. F. Mehler, and J. S. Mattick Specific expression of long noncoding RNAs in the mouse brain PNAS, January 15, 2008; 105(2): 716 - 721. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Laslett and B. Canback ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences Bioinformatics, January 15, 2008; 24(2): 172 - 175. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Roma, M. Sardiello, G. Cobellis, P. Cruz, G. Lago, R. Sanges, and E. Stupka The UniTrap resource: tools for the biologist enabling optimized use of gene trap clones Nucleic Acids Res., January 11, 2008; 36(suppl_1): D741 - D746. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Rattei, P. Tischler, R. Arnold, F. Hamberger, J. Krebs, J. Krumsiek, B. Wachinger, V. Stumpflen, and W. Mewes SIMAP structuring the network of protein similarities Nucleic Acids Res., January 11, 2008; 36(suppl_1): D289 - D292. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Nozawa, Y. Kawahara, and M. Nei From the Cover: Genomic drift and copy number variation of sensory receptor genes in humans PNAS, December 18, 2007; 104(51): 20421 - 20426. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Siepel, M. Diekhans, B. Brejova, L. Langton, M. Stevens, C. L.G. Comstock, C. Davis, B. Ewing, S. Oommen, C. Lau, et al. Targeted discovery of novel human exons by comparative genomics Genome Res., December 1, 2007; 17(12): 1763 - 1773. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. T. Saunders and P. Green Insights from Modeling Protein Evolution with Context-Dependent Mutation and Asymmetric Amino Acid Selection Mol. Biol. Evol., December 1, 2007; 24(12): 2632 - 2647. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Graham, M. W. McBride, M. Gaasenbeek, K. Gilday, E. Beattie, W. H. Miller, J. D. McClure, J. M. Polke, A. Montezano, R. M. Touyz, et al. Candidate Genes That Determine Response to Salt in the Stroke-Prone Spontaneously Hypertensive Rat: Congenic Analysis Hypertension, December 1, 2007; 50(6): 1134 - 1141. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. A. Rodriguez, T. Bompada, M. Syed, P. K. Shah, and N. Maltsev Evolutionary analysis of enzymes using Chisel Bioinformatics, November 15, 2007; 23(22): 2961 - 2968. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. K. Saini, S. Griffiths-Jones, and A. J. Enright Genomic analysis of human microRNA transcripts PNAS, November 6, 2007; 104(45): 17719 - 17724. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Gordon, S. Yang, M. Tran-Gyamfi, D. Baggott, M. Christensen, A. Hamilton, R. Crooijmans, M. Groenen, S. Lucas, I. Ovcharenko, et al. Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions Genome Res., November 1, 2007; 17(11): 1603 - 1613. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Zhang, M. L. Hastings, A. R. Krainer, and M. Q. Zhang Dual-specificity splice sites function alternatively as 5' and 3' splice sites PNAS, September 18, 2007; 104(38): 15028 - 15033. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. Guardado-Calvo, A. L. Llamas-Saiz, G. C. Fox, P. Langlois, and M. J. van Raaij Structure of the C-terminal head domain of the fowl adenovirus type 1 long fiber J. Gen. Virol., September 1, 2007; 88(9): 2407 - 2416. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. P. John, T. Wang, S. Steffen, S. Longhi, C. S. Schmaljohn, and C. B. Jonsson Ebola Virus VP30 Is an RNA Binding Protein J. Virol., September 1, 2007; 81(17): 8967 - 8976. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Zahir, H. V Firth, A. Baross, A. D Delaney, P. Eydoux, W. T Gibson, S. Langlois, H. Martin, L. Willatt, M. A Marra, et al. Novel deletions of 14q11.2 associated with developmental delay, cognitive impairment and similar minor anomalies in three children J. Med. Genet., September 1, 2007; 44(9): 556 - 561. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Wagner Rapid Detection of Positive Selection in Genes and Genomes Through Variation Clusters Genetics, August 1, 2007; 176(4): 2451 - 2463. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Takaoka, M. Ohta, A. Ito, K. Takamatsu, A. Sugano, K. Funakoshi, N. Takaoka, N. Sato, H. Yokozaki, N. Arizono, et al. Electroacupuncture suppresses myostatin gene expression: cell proliferative reaction in mouse skeletal muscle Physiol Genomics, July 18, 2007; 30(2): 102 - 110. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Backes, A. Keller, J. Kuentzer, B. Kneissl, N. Comtesse, Y. A. Elnakady, R. Muller, E. Meese, and H.-P. Lenhof GeneTrail--advanced gene set enrichment analysis Nucleic Acids Res., July 13, 2007; 35(suppl_2): W186 - W192. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Lee, T. Hong, S. J. Byun, T. Woo, and Y. J. Choi ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences Nucleic Acids Res., July 13, 2007; 35(suppl_2): W159 - W162. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. B. Voelker and J. A. Berglund A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing Genome Res., July 1, 2007; 17(7): 1023 - 1033. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Roma, G. Cobellis, P. Claudiani, F. Maione, P. Cruz, G. Tripoli, M. Sardiello, I. Peluso, and E. Stupka A novel view of the transcriptome revealed from gene trapping in mouse embryonic stem cells Genome Res., July 1, 2007; 17(7): 1051 - 1060. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Garg and P. Green Differing patterns of selection in alternative and constitutive splice sites Genome Res., July 1, 2007; 17(7): 1015 - 1022. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Fujishima, M. Komasa, S. Kitamura, H. Suzuki, M. Tomita, and A. Kanai Proteome-Wide Prediction of Novel DNA/RNA-Binding Proteins Using Amino Acid Composition and Periodicity in the Hyperthermophilic Archaeon Pyrococcus furiosus DNA Res, June 15, 2007; (2007) dsm011v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. M. Koch, R. M. Andrews, P. Flicek, S. C. Dillon, U. Karaoz, G. K. Clelland, S. Wilcox, D. M. Beare, J. C. Fowler, P. Couttet, et al. The landscape of histone modifications across 1% of the human genome in five human cell lines Genome Res., June 1, 2007; 17(6): 691 - 707. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. A. Bhinge, J. Kim, G. M. Euskirchen, M. Snyder, and V. R. Iyer Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE) Genome Res., June 1, 2007; 17(6): 910 - 916. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Bao, J. L. Peirce, M. Zhou, H. Li, D. Goldowitz, R. W. Williams, L. Lu, and Y. Cui An integrative genomics strategy for systematic characterization of genetic loci modulating phenotypes Hum. Mol. Genet., June 1, 2007; 16(11): 1381 - 1390. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. Emanuelsson, U. Nagalakshmi, D. Zheng, J. S. Rozowsky, A. E. Urban, J. Du, Z. Lian, V. Stolc, S. Weissman, M. Snyder, et al. Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome Genome Res., June 1, 2007; 17(6): 886 - 897. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Oyama, H. Kozuka-Hata, Y. Suzuki, K. Semba, T. Yamamoto, and S. Sugano Diversity of Translation Start Sites May Define Increased Complexity of the Human Short ORFeome Mol. Cell. Proteomics, June 1, 2007; 6(6): 1000 - 1006. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Dahl, J. Stenberg, S. Fredriksson, K. Welch, M. Zhang, M. Nilsson, D. Bicknell, W. F. Bodmer, R. W. Davis, and H. Ji Multigene amplification and massively parallel sequencing for cancer mutation discovery PNAS, May 29, 2007; 104(22): 9387 - 9392. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Menotti-Raymond, V. A. David, A. A. Schaffer, R. Stephens, D. Wells, R. Kumar-Singh, S. J. O'Brien, and K. Narfstrom Mutation in CEP290 Discovered for Cat Model of Human Retinal Degeneration J. Hered., May 16, 2007; (2007) esm019v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Q.-H. Zhu, A.-Y. Guo, G. Gao, Y.-F. Zhong, M. Xu, M. Huang, and J. Luo DPTF: a database of poplar transcription factors Bioinformatics, May 15, 2007; 23(10): 1307 - 1308. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Hanada, X. Zhang, J. O. Borevitz, W.-H. Li, and S.-H. Shiu A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection Genome Res., May 1, 2007; 17(5): 632 - 640. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. E. Greenstein, N. Echols, T. N. Lombana, D. S. King, and T. Alber Allosteric Activation by Dimerization of the PknD Receptor Ser/Thr Protein Kinase from Mycobacterium tuberculosis J. Biol. Chem., April 13, 2007; 282(15): 11427 - 11435. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. A. F. Galante, J. Trimarchi, C. L. Cepko, S. J. de Souza, L. Ohno-Machado, and W. P. Kuo Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data Bioinformatics, April 1, 2007; 23(7): 903 - 905. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Keibler, M. Arumugam, and M. R. Brent The Treeterbi and Parallel Treeterbi algorithms: efficient, optimal decoding for ordinary, generalized and pair HMMs Bioinformatics, March 1, 2007; 23(5): 545 - 554. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Kim, A. Magen, and G. Ast Different levels of alternative splicing among eukaryotes Nucleic Acids Res., January 12, 2007; 35(1): 125 - 131. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. L. Wheeler, T. Barrett, D. A. Benson, S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, M. DiCuccio, R. Edgar, S. Federhen, et al. Database resources of the National Center for Biotechnology Information Nucleic Acids Res., January 12, 2007; 35(suppl_1): D5 - D12. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Lee, T. Kim, S.-K. Kim, K. H. Lee, and D. Lee Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications Nucleic Acids Res., January 12, 2007; 35(suppl_1): D47 - D50. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Kim, A. V. Alekseyenko, M. Roy, and C. Lee The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species Nucleic Acids Res., January 12, 2007; 35(suppl_1): D93 - D98. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Igarashi, A. Eroshkin, S. Gramatikova, K. Gramatikoff, Y. Zhang, J. W. Smith, A. L. Osterman, and A. Godzik CutDB: a proteolytic event database Nucleic Acids Res., January 12, 2007; 35(suppl_1): D546 - D549. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. E. Kazakov, M. J. Cipriano, P. S. Novichkov, S. Minovitsky, D. V. Vinogradov, A. Arkin, A. A. Mironov, M. S. Gelfand, and I. Dubchak RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes Nucleic Acids Res., January 12, 2007; 35(suppl_1): D407 - D412. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. G. Jegga, S. Gowrisankar, J. Chen, and B. J. Aronow PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease Nucleic Acids Res., January 12, 2007; 35(suppl_1): D700 - D706. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. E. Snyder, N. Kampanya, J. Lu, E. K. Nordberg, H. R. Karur, M. Shukla, J. Soneja, Y. Tian, T. Xue, H. Yoo, et al. PATRIC: The VBI PathoSystems Resource Integration Center Nucleic Acids Res., January 12, 2007; 35(suppl_1): D401 - D406. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. E. Ulrich and I. B. Zhulin MiST: a microbial signal transduction database Nucleic Acids Res., January 12, 2007; 35(suppl_1): D386 - D390. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. K. McNeil, C. Reich, R. K. Aziz, D. Bartels, M. Cohoon, T. Disz, R. A. Edwards, S. Gerdes, K. Hwang, M. Kubal, et al. The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation Nucleic Acids Res., January 12, 2007; 35(suppl_1): D347 - D353. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Higasa, K. Miyatake, Y. Kukita, T. Tahira, and K. Hayashi D-HaploDB: a database of definitive haplotypes determined by genotyping complete hydatidiform mole samples Nucleic Acids Res., January 12, 2007; 35(suppl_1): D685 - D689. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. A. Eyre, M. W. Wright, M. J. Lush, and E. A. Bruford HCOP: a searchable database of human orthology predictions Brief Bioinform, January 1, 2007; 8(1): 2 - 5. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. L. Andersen, C. Wiuf, M. Kruhoffer, M. Korsgaard, S. Laurberg, and T. F. Orntoft Frequent occurrence of uniparental disomy in colorectal cancer Carcinogenesis, January 1, 2007; 28(1): 38 - 48. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Tembe, N. Zavaljevski, E. Bode, C. Chase, J. Geyer, L. Wasieloski, G. Benson, and J. Reifman Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays Bioinformatics, January 1, 2007; 23(1): 5 - 13. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Martinez, A. D. Smith, B. Li, M. Q. Zhang, and K. S. Harrod Computational prediction of novel components of lung transcriptional networks Bioinformatics, January 1, 2007; 23(1): 21 - 29. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Loots and I. Ovcharenko ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes Bioinformatics, January 1, 2007; 23(1): 122 - 124. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Cao, J.-L. Li, D. Li, J. F. Tobin, and R. E. Gimeno Molecular identification of microsomal acyl-CoA:glycerol-3-phosphate acyltransferase, a key enzyme in de novo triacylglycerol synthesis PNAS, December 26, 2006; 103(52): 19695 - 19700. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Puerta-Fernandez, J. E. Barrick, A. Roth, and R. R. Breaker Identification of a large noncoding RNA in extremophilic eubacteria PNAS, December 19, 2006; 103(51): 19490 - 19495. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Du, J. S. Rozowsky, J. O. Korbel, Z. D. Zhang, T. E. Royce, M. H. Schultz, M. Snyder, and M. Gerstein A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge Bioinformatics, December 15, 2006; 22(24): 3016 - 3024. [Abstract] [Full Text] [PDF]
|
|