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Nucleic Acids Research 2005 33(Database Issue):D647-D650; doi:10.1093/nar/gki014
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Nucleic Acids Research, 2005, Vol. 33, Database issue D647-D650
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved

RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome

Tetsuya Sakurai1,2, Masakazu Satou1,2, Kenji Akiyama1,2, Kei Iida1,2, Motoaki Seki2,3, Takashi Kuromori2, Takuya Ito3, Akihiko Konagaya1, Tetsuro Toyoda1 and Kazuo Shinozaki2,3,*

1 Bioinformatics Group and 2 Plant Functional Genomics Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan and 3 Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba 305-0074, Japan

* To whom correspondence should be addressed. Tel: +81-29-836-4359; Fax: +81-29-836-9060; Email: sinozaki{at}rtc.riken.jp

Received June 24, 2004; Revised and Accepted September 16, 2004

The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN Arabidopsis full-length (RAFL) complementary DNAs (cDNAs), their promoter regions, Dissociation (Ds) transposon-tagged lines and expression data from microarray experiments. RARGE provides tools for searching by resource code, sequence homology or keyword, and rapid access to detailed information on the resources. We have isolated 245 946 RAFL cDNA clones and collected 11 933 transposon-tagged lines, which are available from the RIKEN Bioresource Center and are stored in RARGE. The RARGE web interface can be accessed at http://rarge.gsc.riken.jp/. Additionally, we report 90 000 new RAFL cDNA clones here.

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