Skip Navigation

Nucleic Acids Research 2005 33(Web Server Issue):W198-W201; doi:10.1093/nar/gki440
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (1771K) Freely available
Right arrow Screen PDF (212K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Fariselli, P.
Right arrow Articles by Casadio, R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Fariselli, P.
Right arrow Articles by Casadio, R.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oupjournals.org

Article

TRAMPLE: the transmembrane protein labelling environment

Piero Fariselli, Michele Finelli1, Ivan Rossi1, Mauro Amico1, Andrea Zauli1, Pier Luigi Martelli and Rita Casadio*

Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna via Irnerio 42, I-40126 Bologna, Italy 1BioDec S.r.l., Almacube via Fanin 48, I-40127 Bologna, Italy

*To whom correspondence should be addressed. Tel: +39 051 2094005; Fax: +39 051 242576; Email: casadio{at}kaiser.alma.unibo.it

Received February 11, 2005. Revised March 30, 2005. Accepted March 30, 2005.

TRAMPLE (http://gpcr.biocomp.unibo.it/biodec/) is a web application server dedicated to the detection and the annotation of transmembrane protein sequences. TRAMPLE includes different state-of-the-art algorithms for the prediction of signal peptides, transmembrane segments (both beta-strands and alpha-helices), secondary structure and fast fold recognition. TRAMPLE also includes a complete content management system to manage the results of the predictions. Each user of the server has his/her own workplace, where the data can be stored, organized, accessed and annotated with documents through a simple web-based interface. In this manner, TRAMPLE significantly improves usability with respect to other more traditional web servers.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 MicrobiologyHome page
M. T. Chaudhry, Y. Huang, X.-H. Shen, A. Poetsch, C.-Y. Jiang, and S.-J. Liu
Genome-wide investigation of aromatic acid transporters in Corynebacterium glutamicum
Microbiology, March 1, 2007; 153(3): 857 - 865.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
P. Fariselli, I. Rossi, E. Capriotti, and R. Casadio
The WWWH of remote homolog detection: The state of the art
Brief Bioinform, March 1, 2007; 8(2): 78 - 87.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.